diff --git a/CHANGELOG.md b/CHANGELOG.md index 23eb1fe16..2c3d147f3 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -126,6 +126,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements - [PR #1367](https://github.com/nf-core/rnaseq/pull/1367) - Clarify design formula and blind dispersion estimation - [PR #1370](https://github.com/nf-core/rnaseq/pull/1370) - Bump versions for 3.15.0 - [PR #1371](https://github.com/nf-core/rnaseq/pull/1371) - Apply Maxime's CHANGELOG edits +- [PR #1372](https://github.com/nf-core/rnaseq/pull/1372) - Bump tximeta/tximport for gene table row names fix ### Parameters diff --git a/modules.json b/modules.json index c5561e558..6e266bc86 100644 --- a/modules.json +++ b/modules.json @@ -237,7 +237,7 @@ }, "tximeta/tximport": { "branch": "master", - "git_sha": "af778cca88b2a983152bdf2d80634e52dd1ef80f", + "git_sha": "d612c281cf2fae62cdd79c70a22fc6349108570c", "installed_by": ["modules", "quantify_pseudo_alignment"] }, "ucsc/bedclip": { diff --git a/modules/nf-core/tximeta/tximport/templates/tximport.r b/modules/nf-core/tximeta/tximport/templates/tximport.r index 510cfac59..e8235c8b0 100755 --- a/modules/nf-core/tximeta/tximport/templates/tximport.r +++ b/modules/nf-core/tximeta/tximport/templates/tximport.r @@ -153,7 +153,7 @@ if ("tx2gene" %in% names(transcript_info) && !is.null(transcript_info\$tx2gene)) gi.s <- summarizeToGene(txi, tx2gene = tx2gene, countsFromAbundance = "scaledTPM") gene_info <- transcript_info\$gene[match(rownames(gi[[1]]), transcript_info\$gene[["gene_id"]]),] - + rownames(gene_info) <- NULL col_data_frame <- DataFrame(coldata) # Create gene-level SummarizedExperiment objects