Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Pipeline fails if sample names have hyphens #1377

Closed
pinin4fjords opened this issue Sep 12, 2024 · 0 comments · Fixed by #1380
Closed

Pipeline fails if sample names have hyphens #1377

pinin4fjords opened this issue Sep 12, 2024 · 0 comments · Fixed by #1380
Labels
bug Something isn't working

Comments

@pinin4fjords
Copy link
Member

Description of the bug

Unconfirmed, but had a report that the pipeline failed at the SUMMARIZEDEXPERIMENT steps if sample names contain hyphens. I suspect this is just because of the underlying R script sanitising the names, so should be an easy fix.

Command used and terminal output

No response

Relevant files

No response

System information

No response
@pinin4fjords pinin4fjords added the bug Something isn't working label Sep 12, 2024
@pinin4fjords pinin4fjords added this to the 3.16.0 milestone Sep 12, 2024
@pinin4fjords pinin4fjords mentioned this issue Sep 13, 2024
Merged
11 tasks
@pinin4fjords pinin4fjords linked a pull request Sep 13, 2024 that will close this issue
Fix issues with R modules changing sample names #1380
Merged
11 tasks
@pinin4fjords pinin4fjords removed this from the 3.16.0 milestone Sep 13, 2024
@pinin4fjords pinin4fjords mentioned this issue Sep 16, 2024
Merged
11 tasks
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
bug Something isn't working
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Fix issues with R modules changing sample names nf-core/rnaseq
1 participant
@pinin4fjords