diff --git a/CHANGELOG.md b/CHANGELOG.md index 1f38790f7..81f74ba7a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -115,6 +115,7 @@ Thank you to everyone else that has contributed by reporting bugs, enhancements - [PR #1357](https://github.com/nf-core/rnaseq/pull/1357) - Fix anchor issue in multiqc - [PR #1358](https://github.com/nf-core/rnaseq/pull/1358) - Update test profiles to restore a static URI for megatests - [PR #1359](https://github.com/nf-core/rnaseq/pull/1359) - Update MultiQC and revert unnecessary workaround +- [PR #1361](https://github.com/nf-core/rnaseq/pull/1361) - Animate subway map - [PR #1362](https://github.com/nf-core/rnaseq/pull/1362) - Move multiqc module prefix for nf-test to module ### Parameters diff --git a/README.md b/README.md index 411dfd3f4..c5f58478e 100644 --- a/README.md +++ b/README.md @@ -20,7 +20,9 @@ **nf-core/rnaseq** is a bioinformatics pipeline that can be used to analyse RNA sequencing data obtained from organisms with a reference genome and annotation. It takes a samplesheet and FASTQ files as input, performs quality control (QC), trimming and (pseudo-)alignment, and produces a gene expression matrix and extensive QC report. -![nf-core/rnaseq metro map](docs/images/nf-core-rnaseq_metro_map_grey.png) +![nf-core/rnaseq metro map](docs/images/nf-core-rnaseq_metro_map_grey_animated.svg) + +> In case the image above is not loading, please have a look at the [static version](docs/images/nf-core-rnaseq_metro_map_grey.png). 1. Merge re-sequenced FastQ files ([`cat`](http://www.linfo.org/cat.html)) 2. Auto-infer strandedness by subsampling and pseudoalignment ([`fq`](https://github.com/stjude-rust-labs/fq), [`Salmon`](https://combine-lab.github.io/salmon/)) diff --git a/docs/images/nf-core-rnaseq_metro_map_grey_animated.svg b/docs/images/nf-core-rnaseq_metro_map_grey_animated.svg new file mode 100644 index 000000000..96ea8972a --- /dev/null +++ b/docs/images/nf-core-rnaseq_metro_map_grey_animated.svg @@ -0,0 +1,5489 @@ + + + +image/svg+xml1catfastqSTAGE2. Genome alignment & quantification3. Pseudo-alignment & quantification1. Pre-processing4. Post-processing35412 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +