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Issues list

PIPELINE: write tests for local modules + subworkflows enhancement Improvement for existing functionality
#84 opened Jan 19, 2022 by projectoriented
1
WisecondorX for aneuploidy and gender detection enhancement Improvement for existing functionality
#198 opened Aug 3, 2022 by kvn95ss
1
generate compressed vcf outputs enhancement Improvement for existing functionality
#243 opened Nov 4, 2022 by ramprasadn
@asp8200
19
Download references subworkflow(?) enhancement Improvement for existing functionality
#249 opened Nov 8, 2022 by ramprasadn
@ramprasadn
Create variant calling pipeline with Dragen software enhancement Improvement for existing functionality
#252 opened Nov 16, 2022 by ying-sheng
@ying-sheng
Add more entry points to the workflow Effort high enhancement Improvement for existing functionality Impact high Priority medium
#261 opened Nov 29, 2022 by ramprasadn Release 1.3.0
7
Add full sized test dataset enhancement Improvement for existing functionality
#316 opened Mar 25, 2023 by ramprasadn Release 1.3.0
Customize aws full pipeline tests enhancement Improvement for existing functionality
#318 opened Mar 25, 2023 by ramprasadn Release 1.3.0
Add BPHunter feature-request Request for a new pipeline feature on hold Not planned yet or needs refinement
#424 opened Sep 11, 2023 by ramprasadn
GENMOD and missing values on master bug Something isn't working
#426 opened Sep 17, 2023 by lfearnley
DeepMind AlphaMissense Effort low enhancement Improvement for existing functionality on hold Not planned yet or needs refinement
#427 opened Sep 20, 2023 by dnil
1
Wrong memory qualifier in postprocessgermlinecnvcalls bug Something isn't working
#441 opened Nov 8, 2023 by Jakob37
@ramprasadn
1
somalier (sample control + ancestry) enhancement Improvement for existing functionality
#446 opened Nov 15, 2023 by egenomics
@Lucpen
1
SMNCOPYNUMBERCALLER ZeroDivisionError: float division by zero bug Something isn't working
#447 opened Nov 21, 2023 by yunhua1031
4
use estimated sex in analysis enhancement Improvement for existing functionality
#465 opened Jan 8, 2024 by jemten
manta path error bug Something isn't working
#480 opened Jan 16, 2024 by egenomics
14
Update CADD to version 1.7
#513 opened Feb 6, 2024 by jemten Release 1.3.0
2
rtgtools: Add truth set filtered by bait set for WES samples bug Something isn't working enhancement Improvement for existing functionality
#514 opened Feb 8, 2024 by peterpru
Error_during_installation bug Something isn't working
#537 opened Apr 1, 2024 by vishramt7
10
https://ai.marrvel.org / how to integrate to Scout and our analysis?
#560 opened May 27, 2024 by fulyataylan
5
Bigtools enhancement Improvement for existing functionality
#564 opened Jun 8, 2024 by ramprasadn
Mismatch with new DNAScope ML model format bug Something isn't working
#568 opened Jun 13, 2024 by Jakob37
3
Test+Docker profile fails: "The TensorFlow library was compiled to use AVX instructions, but these aren't available on your machine." bug Something isn't working
#590 opened Aug 12, 2024 by sitems
5
Test+Docker profile fails: "ValueError: call_variants_outputs did not pass sanity check." bug Something isn't working
#592 opened Aug 12, 2024 by sitems
1
filter_vep broken with hg38 bug Something isn't working
#599 opened Aug 15, 2024 by fellen31
1
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