From e32340094fe23f35ddd64be28dad7219afea68c5 Mon Sep 17 00:00:00 2001 From: Stephen Watts Date: Wed, 17 Jul 2024 15:03:10 +1000 Subject: [PATCH] Indicate NOTE author --- modules/local/svprep/assemble/main.nf | 2 +- modules/local/svprep/call/main.nf | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/modules/local/svprep/assemble/main.nf b/modules/local/svprep/assemble/main.nf index 4c8955b8..498930ef 100644 --- a/modules/local/svprep/assemble/main.nf +++ b/modules/local/svprep/assemble/main.nf @@ -44,7 +44,7 @@ process GRIDSS_ASSEMBLE { """ # Create shadow directory with file symlinks of GRIDSS 'working' dir to prevent cache invalidation - # NOTE: for reasons that elude me, NF doesn't always stage in the workingdir; remove if it is present + # NOTE(SW): for reasons that elude me, NF doesn't always stage in the workingdir; remove if it is present shadow_input_directory() { src=\${1} dst="${output_dirname}/work/\${src##*/}" diff --git a/modules/local/svprep/call/main.nf b/modules/local/svprep/call/main.nf index eeec1b5c..b5ea5973 100644 --- a/modules/local/svprep/call/main.nf +++ b/modules/local/svprep/call/main.nf @@ -44,7 +44,7 @@ process GRIDSS_CALL { """ # Create shadow directory with file symlinks of GRIDSS 'working' dir to prevent cache invalidation - # NOTE: for reasons that elude me, NF doesn't always stage in the workingdir; remove if it is present + # NOTE(SW): for reasons that elude me, NF doesn't always stage in the workingdir; remove if it is present shadow_input_directory() { src=\${1} dst="${output_dirname}/"