From c02a9b59c0843ae8237f9d7cb7282e44c1ad4587 Mon Sep 17 00:00:00 2001
From: "renovate[bot]" <29139614+renovate[bot]@users.noreply.github.com>
Date: Tue, 6 Aug 2024 05:51:00 +0000
Subject: [PATCH 1/2] chore(config): migrate config .github/renovate.json5

---
 .github/renovate.json5 | 37 +++----------------------------------
 1 file changed, 3 insertions(+), 34 deletions(-)

diff --git a/.github/renovate.json5 b/.github/renovate.json5
index cb31d7f1fa4..80fb04e7a0e 100644
--- a/.github/renovate.json5
+++ b/.github/renovate.json5
@@ -19,50 +19,19 @@
     "pre-commit": {
         enabled: true,
     },
-    customManagers: [
-        // TODO waiting on https://github.com/nf-core/modules/pull/4080
-        // {
-        //     customType: "regex",
-        //     description: "Process Containers dependencies",
-        //     fileMatch: ["(^|/)main\\.nf$"],
-        //     matchStrings: [
-        //         "\\s+'(?<depName>\\S+):(?<currentValue>.*\\-.*)' }\"\n",
-        //     ],
-        //     datasourceTemplate: "docker",
-        // },
-        // {
-        //     customType: "regex",
-        //     description: "Upgrade conda dependencies",
-        //     fileMatch: ["(^|/)environment(.*).ya?ml$"],
-        //     matchStrings: [
-        //         '#\\s*renovate\\s+datasource=conda\\s+depName=(?<depName>.*?)\\s+-\\s*[\\w-]+\\s*==?\\s*"?(?<currentValue>.*)"?',
-        //         '# renovate: datasource=conda depName=(?<depName>.*?)\\s+-\\s*[\\w-]+\\s*==?\\s*"?(?<currentValue>.*)"?',
-        //     ],
-        //     datasourceTemplate: "conda",
-        // },
-        // {
-        //     customType: "regex",
-        //     description: "Upgrade pypi dependencies inside conda environment files",
-        //     fileMatch: ["(^|/)environment(.*).ya?ml$"],
-        //     matchStrings: [
-        //         "# renovate datasource=pypi\\s+-\\s*(?<depName>[\\w-]+)\\s*(\\[[\\w,\\s]+\\])?\\s*==?\\s*(?<currentValue>.*)",
-        //         "# renovate: datasource=pypi\\s+-\\s*(?<depName>[\\w-]+)\\s*(\\[[\\w,\\s]+\\])?\\s*==?\\s*(?<currentValue>.*)",
-        //     ],
-        //     datasourceTemplate: "pypi",
-        // },
-    ],
+    customManagers: [],
     packageRules: [
         {
             matchDatasources: ["docker"],
             registryUrls: ["quay.io"],
         },
         {
-            matchPackagePatterns: ["^nf-core/", "^seqera"],
             matchManagers: ["github-actions"],
             automerge: true,
             pinDigest: {
                 enabled: false,
             },
+            matchPackageNames: ["/^nf-core//", "/^seqera/"],
         },
         {
             matchManagers: ["github-actions"],
@@ -71,9 +40,9 @@
             schedule: ["before 9am"],
         },
         {
-            matchPackagePatterns: ["renovate-config-validator"],
             automerge: true,
             schedule: ["before 9am on Monday"],
+            matchPackageNames: ["/renovate-config-validator/"],
         },
     ],
 }

From 6595d7c253a45b965955b38883db3aa2f81d26d3 Mon Sep 17 00:00:00 2001
From: Edmund Miller <20095261+edmundmiller@users.noreply.github.com>
Date: Wed, 7 Aug 2024 10:00:59 -0500
Subject: [PATCH 2/2] Update .github/renovate.json5
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Co-authored-by: Matthias Hörtenhuber <mashehu@users.noreply.github.com>
---
 .github/renovate.json5 | 33 ++++++++++++++++++++++++++++++++-
 1 file changed, 32 insertions(+), 1 deletion(-)

diff --git a/.github/renovate.json5 b/.github/renovate.json5
index 80fb04e7a0e..7ffc321969b 100644
--- a/.github/renovate.json5
+++ b/.github/renovate.json5
@@ -19,7 +19,38 @@
     "pre-commit": {
         enabled: true,
     },
-    customManagers: [],
+    customManagers: [
+    // TODO waiting on https://github.com/nf-core/modules/pull/4080
+        // {
+        //     customType: "regex",
+        //     description: "Process Containers dependencies",
+        //     fileMatch: ["(^|/)main\\.nf$"],
+        //     matchStrings: [
+        //         "\\s+'(?<depName>\\S+):(?<currentValue>.*\\-.*)' }\"\n",
+        //     ],
+        //     datasourceTemplate: "docker",
+        // },
+        // {
+        //     customType: "regex",
+        //     description: "Upgrade conda dependencies",
+        //     fileMatch: ["(^|/)environment(.*).ya?ml$"],
+        //     matchStrings: [
+        //         '#\\s*renovate\\s+datasource=conda\\s+depName=(?<depName>.*?)\\s+-\\s*[\\w-]+\\s*==?\\s*"?(?<currentValue>.*)"?',
+        //         '# renovate: datasource=conda depName=(?<depName>.*?)\\s+-\\s*[\\w-]+\\s*==?\\s*"?(?<currentValue>.*)"?',
+        //     ],
+        //     datasourceTemplate: "conda",
+        // },
+        // {
+        //     customType: "regex",
+        //     description: "Upgrade pypi dependencies inside conda environment files",
+        //     fileMatch: ["(^|/)environment(.*).ya?ml$"],
+        //     matchStrings: [
+        //         "# renovate datasource=pypi\\s+-\\s*(?<depName>[\\w-]+)\\s*(\\[[\\w,\\s]+\\])?\\s*==?\\s*(?<currentValue>.*)",
+        //         "# renovate: datasource=pypi\\s+-\\s*(?<depName>[\\w-]+)\\s*(\\[[\\w,\\s]+\\])?\\s*==?\\s*(?<currentValue>.*)",
+        //     ],
+        //     datasourceTemplate: "pypi",
+        // },
+        ],
     packageRules: [
         {
             matchDatasources: ["docker"],