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Update lofreq somatic & lofreq call-parallel #5930

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nevinwu opened this issue Jul 8, 2024 · 0 comments · Fixed by #5931
Closed
2 tasks done

Update lofreq somatic & lofreq call-parallel #5930

nevinwu opened this issue Jul 8, 2024 · 0 comments · Fixed by #5931
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bug Something isn't working update module

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@nevinwu
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nevinwu commented Jul 8, 2024 •
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Have you checked the docs?

Description of the bug

Lofreq somatic & lofreq call parallel modules only work if they recieve a bam file as an input. @AitorPeseta and I will be working in updating these modules to convert cram files to bam bam format, since we are planning to contribute to Sarek by adding this caller.

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Update lofreq somatic and callparallel AitorPeseta/modules
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@nevinwu