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modules.json
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modules.json
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{
"name": "nf-core/methylseq",
"homePage": "https://github.com/nf-core/methylseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bismark/align": {
"branch": "master",
"git_sha": "dfd89399e3c6e2422c4cdcf0aaa8cf2393dc51c9",
"installed_by": ["modules"]
},
"bismark/coverage2cytosine": {
"branch": "master",
"git_sha": "430bcb24e43dabcafb5174c955300730e5ad23f7",
"installed_by": ["modules"]
},
"bismark/deduplicate": {
"branch": "master",
"git_sha": "0755c617637d21b2c290b26d225debe3070aa109",
"installed_by": ["modules"]
},
"bismark/genomepreparation": {
"branch": "master",
"git_sha": "3ab4739901f600a16ede0f491abfb6bf5d993cb2",
"installed_by": ["modules"]
},
"bismark/methylationextractor": {
"branch": "master",
"git_sha": "0755c617637d21b2c290b26d225debe3070aa109",
"installed_by": ["modules"]
},
"bismark/report": {
"branch": "master",
"git_sha": "0755c617637d21b2c290b26d225debe3070aa109",
"installed_by": ["modules"]
},
"bismark/summary": {
"branch": "master",
"git_sha": "dfd89399e3c6e2422c4cdcf0aaa8cf2393dc51c9",
"installed_by": ["modules"]
},
"bwameth/align": {
"branch": "master",
"git_sha": "dfd89399e3c6e2422c4cdcf0aaa8cf2393dc51c9",
"installed_by": ["modules"]
},
"bwameth/index": {
"branch": "master",
"git_sha": "a716d10039f9728f2674f45c33a95b605851ea50",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
"installed_by": ["modules"]
},
"fastqc": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"gunzip": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"methyldackel/extract": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"methyldackel/mbias": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "49f4e50534fe4b64101e62ea41d5dc43b1324358",
"installed_by": ["modules"]
},
"preseq/lcextrap": {
"branch": "master",
"git_sha": "a1abf90966a2a4016d3c3e41e228bfcbd4811ccc",
"installed_by": ["modules"]
},
"qualimap/bamqc": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"qualimap/bamqccram": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"samtools/faidx": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/index": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "b7800db9b069ed505db3f9d91b8c72faea9be17b",
"installed_by": ["modules"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["modules"]
},
"trimgalore": {
"branch": "master",
"git_sha": "8c5eeedd45e295fc9a4f164631da6a8b37e6b9c6",
"installed_by": ["modules"]
},
"untar": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
"installed_by": ["subworkflows"]
}
}
}
}
}
}