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Busco error handling - do not ignore #72

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Jul 14, 2020
Merged

Busco error handling - do not ignore #72

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4d46aca
Turned ignoring of busco errors off.
skrakau Jul 14, 2020
9ec9121
Update CHANGELOG
skrakau Jul 14, 2020
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1 change: 1 addition & 0 deletions CHANGELOG.md
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Expand Up @@ -27,6 +27,7 @@ and this project adheres to [Semantic Versioning](http://semver.org/spec/v2.0.0.
- Update MetaBAT2 from v2.13 to v2.15
- Fix number of threads used by MetaBAT2 program `jgi_summarize_bam_contig_depths`
- No more ignoring errors in SPAdes assembly
- No more ignoring of BUSCO errors

### `Deprecated`

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2 changes: 1 addition & 1 deletion conf/base.config
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Expand Up @@ -24,7 +24,7 @@ process {
time = 4.h
}
withName: busco {
errorStrategy = { task.exitStatus in [143,137] ? 'retry' : 'ignore' }
errorStrategy = { task.exitStatus in [143,137] ? 'retry' : 'finish' }
}
withName: phix_download_db {
time = 4.h
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