From 80829728af9e890057a2aba78ddecbc59f102c2a Mon Sep 17 00:00:00 2001
From: Jim Downie <19718667+prototaxites@users.noreply.github.com>
Date: Thu, 1 Aug 2024 17:05:19 +0100
Subject: [PATCH 1/3] Update gtdbtk.nf

---
 subworkflows/local/gtdbtk.nf | 1 +
 1 file changed, 1 insertion(+)

diff --git a/subworkflows/local/gtdbtk.nf b/subworkflows/local/gtdbtk.nf
index 95e343c8..aae4f9ae 100644
--- a/subworkflows/local/gtdbtk.nf
+++ b/subworkflows/local/gtdbtk.nf
@@ -76,6 +76,7 @@ workflow GTDBTK {
                             .of(gtdb_dir)
                             .map{['gtdb', it]}
                             .groupTuple()
+                            .first()
     } else {
         error("Unsupported object given to --gtdb, database must be supplied as either a directory or a .tar.gz file!")
     }

From deab0076bf6c58272aafbcf9f0bae1b6473e41d5 Mon Sep 17 00:00:00 2001
From: Jim Downie <19718667+prototaxites@users.noreply.github.com>
Date: Thu, 1 Aug 2024 17:33:49 +0100
Subject: [PATCH 2/3] Update gtdbtk.nf

---
 subworkflows/local/gtdbtk.nf | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/subworkflows/local/gtdbtk.nf b/subworkflows/local/gtdbtk.nf
index aae4f9ae..21ef25b2 100644
--- a/subworkflows/local/gtdbtk.nf
+++ b/subworkflows/local/gtdbtk.nf
@@ -74,9 +74,8 @@ workflow GTDBTK {
         gtdb_dir = gtdb.listFiles()
         ch_db_for_gtdbtk = Channel
                             .of(gtdb_dir)
-                            .map{['gtdb', it]}
-                            .groupTuple()
-                            .first()
+                            .collect()
+                            .map { ["gtdb", it] }
     } else {
         error("Unsupported object given to --gtdb, database must be supplied as either a directory or a .tar.gz file!")
     }

From 5b9c4f1386f800e9c0021eed7722522246bbbd65 Mon Sep 17 00:00:00 2001
From: Jim Downie <19718667+prototaxites@users.noreply.github.com>
Date: Fri, 2 Aug 2024 09:23:23 +0100
Subject: [PATCH 3/3] Update CHANGELOG.md

---
 CHANGELOG.md | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 93022c43..06bd879f 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -11,6 +11,8 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### `Fixed`
 
+- [#646](https://github.com/nf-core/mag/pull/646) - GTDB-Tk directory input now creates a value channel so it runs for all entries to the process and not just the first (by @prototaxites).
+
 ### `Dependencies`
 
 ### `Deprecated`