busco error - ignored

[skrakau]

When running the pipeline on the test data with scratch = false, I frequently see this error:

"""
NOTE: Process busco (MEGAHIT-test_minigut_sample2.unbinned.2.fa) terminated with an error exit status (1) -- Error is ignored
"""

The pipeline still completes successfully.

The .command.log file contains:
"cp: cannot stat 'run_MEGAHIT-test_minigut_sample2.unbinned.2.fa/short_summary_MEGAHIT-test_minigut_sample2.unbinned.2.fa.txt': No such file or directory"

[d4straub]

Now you have prevented the pipeline to ignore the error, can we close that now or would you like to address the BUSCO problem itself as well in this issue?