CAT is not included in the the BIN_SUMMARY

[maxibor]

Description of the bug

RIght now, only GTDB-Tk taxonomic classification is reported in the BIN_SUMMARY process.
But now that nf-core/mag can handle more than prokaryotic/archeal MAGs, it would be nice to have CAT also be included in the bin summary table, since it can classify also other clades (which GTDB-Tk can't).

Command used and terminal output

No response

Relevant files

No response

System information

No response

[maxibor]

Example cat_summary.tsv file:

# bin	classification	reason	lineage	lineage scores	full lineage names
MEGAHIT-CONCOCT-metagenomebis_10.fa	taxid assigned	based on 17/17 ORFs	1;131567;2;1783272;1239;186801;186802;31979;1485;1502	1.00;0.76;0.76;0.76;0.76;0.76;0.76;0.76;0.76;0.76	root (no rank): 1.00	cellular organisms (no rank): 0.76	Bacteria (superkingdom): 0.76	Terrabacteria group (clade): 0.76	Firmicutes (phylum): 0.76	Clostridia (class): 0.76	Clostridiales (order): 0.76	Clostridiaceae (family): 0.76	Clostridium (genus): 0.76	Clostridium perfringens (species): 0.76
MEGAHIT-CONCOCT-metagenomebis_100.fa	taxid assigned	based on 7/7 ORFs	1;131567;2;1783272;1239;186801;186802;31979;1485;1502	1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00	root (no rank): 1.00	cellular organisms (no rank): 1.00	Bacteria (superkingdom): 1.00	Terrabacteria group (clade): 1.00	Firmicutes (phylum): 1.00	Clostridia (class): 1.00	Clostridiales (order): 1.00	Clostridiaceae (family): 1.00	Clostridium (genus): 1.00	Clostridium perfringens (species): 1.00
MEGAHIT-CONCOCT-metagenomebis_101.fa	taxid assigned	based on 7/7 ORFs	1;131567;2;1783272;1239;186801;186802;31979;1485;1502	1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;0.96	root (no rank): 1.00	cellular organisms (no rank): 1.00	Bacteria (superkingdom): 1.00	Terrabacteria group (clade): 1.00	Firmicutes (phylum): 1.00	Clostridia (class): 1.00	Clostridiales (order): 1.00	Clostridiaceae (family): 1.00	Clostridium (genus): 1.00	Clostridium perfringens (species): 0.96
MEGAHIT-CONCOCT-metagenomebis_102.fa	taxid assigned	based on 6/6 ORFs	1;131567;2;1783272;1239;186801;186802;31979;1485;1502	1.00;1.00;1.00;1.00;1.00;0.73;0.73;0.73;0.73;0.73	root (no rank): 1.00	cellular organisms (no rank): 1.00	Bacteria (superkingdom): 1.00	Terrabacteria group (clade): 1.00	Firmicutes (phylum): 1.00	Clostridia (class): 0.73	Clostridiales (order): 0.73	Clostridiaceae (family): 0.73	Clostridium (genus): 0.73	Clostridium perfringens (species): 0.73
MEGAHIT-CONCOCT-metagenomebis_103.fa	taxid assigned	based on 17/18 ORFs	1;131567;2;1783272;1239;186801;186802;31979;1485;1502	1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00	root (no rank): 1.00	cellular organisms (no rank): 1.00	Bacteria (superkingdom): 1.00	Terrabacteria group (clade): 1.00	Firmicutes (phylum): 1.00	Clostridia (class): 1.00	Clostridiales (order): 1.00	Clostridiaceae (family): 1.00	Clostridium (genus): 1.00	Clostridium perfringens (species): 1.00
MEGAHIT-CONCOCT-metagenomebis_104.fa	taxid assigned	based on 6/7 ORFs	1;131567;2;1783272;1239;186801;186802;31979;1485;1502	1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00;1.00	root (no rank): 1.00	cellular organisms (no rank): 1.00	Bacteria (superkingdom): 1.00	Terrabacteria group (clade): 1.00	Firmicutes (phylum): 1.00	Clostridia (class): 1.00	Clostridiales (order): 1.00	Clostridiaceae (family): 1.00	Clostridium (genus): 1.00	Clostridium perfringens (species): 1.00