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MaxBin2 bins missing from GenomeBinning/MaxBin2/bins #503

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Perugolate opened this issue Sep 1, 2023 · 1 comment
Closed

MaxBin2 bins missing from GenomeBinning/MaxBin2/bins #503

Perugolate opened this issue Sep 1, 2023 · 1 comment
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@Perugolate
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Description of the bug

GenomeBinning/bin_summary.tsv lists a mix of MetaBAT2 and MaxBin2 bins. GenomeBinning/MetaBAT2/bins/ seems to contain the listed MetaBAT2 bins but I can't locate the MaxBin2 bins, GenomeBinning/MaxBin2/bins is empty.

Command used and terminal output

nextflow run nf-core/mag --input samplesheet.csv -profile singularity --outdir /mnt/shared/scratch/pjohnsto/20230828_nfc_mag_soil_amr_full/ --skip_spades true --busco_reference /mnt/shared/scratch/pjohnsto/db/bacteria_odb10.2020-03-06.tar.gz --save_busco_reference --skip_concoct true -resume

Relevant files

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System information

N E X T F L O W ~ version 23.04.3
HPC
slurm
apptainer 1.2.2-1.el8
rocky linux 8.8
nf-core/mag v2.3.2-g66cf53a
@Perugolate Perugolate added the bug Something isn't working label Sep 1, 2023
@jfy133
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jfy133 commented Sep 1, 2023

Fixed in #500

@jfy133 jfy133 closed this as completed Sep 1, 2023
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@Perugolate @jfy133