error with projectDir

[skrakau]

Hi,
I pulled the version 1.1.2 and tried to run but getting the error 'No such
variable: projectDir'. is this something I need to provide with the command
options?

Thanks

On Wed, Nov 25, 2020, 2:42 AM Sabrina Krakau [email protected]
wrote:

Hi @ramakrishnas https://github.com/ramakrishnas , yes that would be
great! Let us know if it solves your problems.

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Originally posted by @ramakrishnas in #131 (comment)

[d4straub]

@ramakrishnas I also tested this and it indeed failed:

nextflow pull nf-core/mag -r 1.1.2
Checking nf-core/mag ...
done - revision: 8c0f1fedf2 [1.1.2]

nextflow run nf-core/mag -r 1.1.2 -profile test,singularity
N E X T F L O W  ~  version 20.04.1
Launching `nf-core/mag` [small_bell] - revision: 8c0f1fedf2 [1.1.2]
No such variable: projectDir -- Check script '/home/daniel/.nextflow/assets/nf-core/mag/main.nf' at line: 134 or see '.nextflow.log' file for more details

but when updating nextflow to the current version (20.10.0), it works:

nextflow -self-update
nextflow run nf-core/mag -r 1.1.2 -profile test,singularity
N E X T F L O W  ~  version 20.10.0
Launching `nf-core/mag` [curious_hamilton] - revision: 8c0f1fedf2 [1.1.2]

--> So I recommend to update your nextflow version.

[apeltzer]

There has been changes internally baseDir <-> projectDir now in one of the latest updates in Nextflow - not finding the discussion on this right now but someone @nf-core/core might know where to look ;-)

[ramakrishnas]

@skrakau and @d4straub thank you so much, it worked finally!

[d4straub]

Alright, than I can close here.