From e978c23b5058d302a9314d836a306a6b327cd375 Mon Sep 17 00:00:00 2001 From: Adam Rosenbaum Date: Fri, 22 Nov 2024 08:14:44 +0100 Subject: [PATCH] Update output.md --- docs/output.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/output.md b/docs/output.md index d827fa14..987be311 100644 --- a/docs/output.md +++ b/docs/output.md @@ -124,7 +124,7 @@ The pipeline uses porecho_abi or porechop to perform adaptertrimming of the long ### Long read filtering -The pipeline uses filtlong, chopper, or nanoq for quality filtering of long reads, specified with `--longread_filtering_tool `. Only is capable of filtering long reads against short reads, and is therefore currently recommended in the hybrid mode. If chopper is selected as long read filtering tool, Lambda Phage removal will be performed with chopper as well, instead of nanolyse. +The pipeline uses filtlong, chopper, or nanoq for quality filtering of long reads, specified with `--longread_filtering_tool `. Only filtlong is capable of filtering long reads against short reads, and is therefore currently recommended in the hybrid mode. If chopper is selected as long read filtering tool, Lambda Phage removal will be performed with chopper as well, instead of nanolyse.
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