Merge pull request #260 from d4straub/dev

Prepare for release 2.1.1
nf-core · Nov 23, 2021 · 5a74dba · 5a74dba
2 parents 2caec7c + 70029fa
commit 5a74dba
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Showing 6 changed files with 13 additions and 11 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -3,7 +3,7 @@
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## v2.2.0dev - [date]
+## v2.1.1 - 2021/11/23
 
 ### `Added`
 
@@ -16,6 +16,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 - [#249](https://github.com/nf-core/mag/pull/249) - Update workflow overview figure.
 - [#258](https://github.com/nf-core/mag/pull/258) - Updated MultiQC 1.9 to 1.11.
+- [#260](https://github.com/nf-core/mag/pull/260) - Updated SPAdes 3.13.1 -> 3.15.3, MEGAHIT 1.2.7 -> 1.2.7
 
 ### `Fixed`
 

diff --git a/README.md b/README.md
@@ -89,6 +89,7 @@ Long read processing was inspired by [caspargross/HybridAssembly](https://github
 We thank the following people for their extensive assistance in the development of this pipeline:
 
 * [Alexander Peltzer](https://github.com/apeltzer)
+* [Antonia Schuster](https://github.com/antoniaschuster)
 * [Phil Ewels](https://github.com/ewels)
 * [Gisela Gabernet](https://github.com/ggabernet)
 * [Harshil Patel](https://github.com/drpatelh)

diff --git a/modules/local/megahit.nf b/modules/local/megahit.nf
@@ -11,11 +11,11 @@ process MEGAHIT {
         mode: params.publish_dir_mode,
         saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
 
-    conda (params.enable_conda ? "bioconda::megahit=1.2.7" : null)
+    conda (params.enable_conda ? "bioconda::megahit=1.2.9" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/megahit:1.2.7--h8b12597_0"
+        container "https://depot.galaxyproject.org/singularity/megahit:1.2.9--h2e03b76_1"
     } else {
-        container "quay.io/biocontainers/megahit:1.2.7--h8b12597_0"
+        container "quay.io/biocontainers/megahit:1.2.9--h2e03b76_1"
     }
 
     input:

diff --git a/modules/local/spades.nf b/modules/local/spades.nf
@@ -11,11 +11,11 @@ process SPADES {
         mode: params.publish_dir_mode,
         saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
 
-    conda (params.enable_conda ? "bioconda::spades=3.13.1" : null)
+    conda (params.enable_conda ? "bioconda::spades=3.15.3" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/spades:3.13.1--h2d02072_2"
+        container "https://depot.galaxyproject.org/singularity/spades:3.15.3--h95f258a_0"
     } else {
-        container "quay.io/biocontainers/spades:3.13.1--h2d02072_2"
+        container "quay.io/biocontainers/spades:3.15.3--h95f258a_0"
     }
 
     input:

diff --git a/modules/local/spadeshybrid.nf b/modules/local/spadeshybrid.nf
@@ -11,11 +11,11 @@ process SPADESHYBRID {
         mode: params.publish_dir_mode,
         saveAs: { filename -> saveFiles(filename:filename, options:params.options, publish_dir:getSoftwareName(task.process), meta:meta, publish_by_meta:['id']) }
 
-    conda (params.enable_conda ? "bioconda::spades=3.13.1" : null)
+    conda (params.enable_conda ? "bioconda::spades=3.15.3" : null)
     if (workflow.containerEngine == 'singularity' && !params.singularity_pull_docker_container) {
-        container "https://depot.galaxyproject.org/singularity/spades:3.13.1--h2d02072_2"
+        container "https://depot.galaxyproject.org/singularity/spades:3.15.3--h95f258a_0"
     } else {
-        container "quay.io/biocontainers/spades:3.13.1--h2d02072_2"
+        container "quay.io/biocontainers/spades:3.15.3--h95f258a_0"
     }
 
     input:

diff --git a/nextflow.config b/nextflow.config
@@ -231,7 +231,7 @@ manifest {
     description     = 'Assembly, binning and annotation of metagenomes'
     mainScript      = 'main.nf'
     nextflowVersion = '!>=21.04.0'
-    version         = '2.2.0dev'
+    version         = '2.1.1'
 }
 
 // Function to ensure that resource requirements don't go beyond