From 4b70648b415bf39653cd88534f3f21406c3c63de Mon Sep 17 00:00:00 2001 From: Alex Huebner Date: Mon, 17 Oct 2022 16:19:46 +0200 Subject: [PATCH] Update genome commandline parameter --- docs/usage.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/usage.md b/docs/usage.md index 6ff43131..0d4518d8 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -71,7 +71,7 @@ Again, by default, the group information is only used to compute co-abundances f The typical command for running the pipeline is as follows: ```bash -nextflow run nf-core/mag --input samplesheet.csv --outdir --genome GRCh37 -profile docker +nextflow run nf-core/mag --input samplesheet.csv --outdir --host_genome GRCh37 -profile docker ``` This will launch the pipeline with the `docker` configuration profile. See below for more information about profiles.