nf-core AWS test #5
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| name: nf-core AWS test | |
| # This workflow can be triggered manually with the GitHub actions workflow dispatch button. | |
| # It runs the -profile 'test' on AWS batch | |
| on: | |
| workflow_dispatch: | |
| jobs: | |
| run-tower: | |
| name: Run AWS tests | |
| if: github.repository == 'nf-core/mag' | |
| runs-on: ubuntu-latest | |
| steps: | |
| # Launch workflow using Tower CLI tool action | |
| - name: Launch workflow via tower | |
| uses: seqeralabs/action-tower-launch@v2 | |
| with: | |
| workspace_id: ${{ secrets.TOWER_WORKSPACE_ID }} | |
| access_token: ${{ secrets.TOWER_ACCESS_TOKEN }} | |
| compute_env: ${{ secrets.TOWER_COMPUTE_ENV }} | |
| revision: ${{ github.sha }} | |
| workdir: s3://${{ secrets.AWS_S3_BUCKET }}/work/mag/work-${{ github.sha }} | |
| parameters: | | |
| { | |
| "outdir": "s3://${{ secrets.AWS_S3_BUCKET }}/mag/results-test-${{ github.sha }}" | |
| } | |
| profiles: test | |
| - uses: actions/upload-artifact@v3 | |
| with: | |
| name: Tower debug log file | |
| path: | | |
| tower_action_*.log | |
| tower_action_*.json |