diff --git a/modules/local/enchantr/report_file_size.nf b/modules/local/enchantr/report_file_size.nf index 22200011..0ebea223 100644 --- a/modules/local/enchantr/report_file_size.nf +++ b/modules/local/enchantr/report_file_size.nf @@ -21,12 +21,8 @@ process REPORT_FILE_SIZE { path "file_size_report/tables/log_data.tsv", emit: table script: - def all_logs = logs.join('\n') - def logs_file = workDir + '/logs.txt' - logs_file = file(logs_file) - logs_file.text = all_logs """ - mv "${logs_file}" . + echo "${logs.join('\n')}" > logs.txt Rscript -e "enchantr::enchantr_report('file_size', \\ report_params=list('input'='logs.txt', 'metadata'='${metadata}',\\ 'outdir'=getwd()))"