From a8944b59117b5a8bf5b963ba366b9ab46c97597a Mon Sep 17 00:00:00 2001
From: Gisela Gabernet <gisela.gabernet@gmail.com>
Date: Tue, 12 Mar 2024 22:05:57 -0400
Subject: [PATCH] add default isotype column

---
 conf/test.config                        | 1 +
 conf/test_fetchimgt.config              | 1 +
 conf/test_nocluster.config              | 1 +
 conf/test_raw_immcantation_devel.config | 1 +
 4 files changed, 4 insertions(+)

diff --git a/conf/test.config b/conf/test.config
index 4ca62b41..1bf667f7 100644
--- a/conf/test.config
+++ b/conf/test.config
@@ -34,6 +34,7 @@ params {
     umi_start = 6
     umi_position = 'R1'
     index_file = true
+    isotype_column = 'c_primer'
 }
 
 process{
diff --git a/conf/test_fetchimgt.config b/conf/test_fetchimgt.config
index e223d687..cc6608f7 100644
--- a/conf/test_fetchimgt.config
+++ b/conf/test_fetchimgt.config
@@ -33,6 +33,7 @@ params {
     umi_start = 6
     umi_position = 'R1'
     index_file = true
+    isotype_column = 'c_primer'
 }
 
 process{
diff --git a/conf/test_nocluster.config b/conf/test_nocluster.config
index 418dd6c7..469de7b8 100644
--- a/conf/test_nocluster.config
+++ b/conf/test_nocluster.config
@@ -36,6 +36,7 @@ params {
     cluster_sets = false
     index_file = true
     clonal_threshold = 0.15
+    isotype_column = 'c_primer'
 }
 
 process{
diff --git a/conf/test_raw_immcantation_devel.config b/conf/test_raw_immcantation_devel.config
index fcaba109..b309cb60 100644
--- a/conf/test_raw_immcantation_devel.config
+++ b/conf/test_raw_immcantation_devel.config
@@ -36,6 +36,7 @@ params {
     umi_start = 6
     umi_position = 'R1'
     index_file = true
+    isotype_column = 'c_primer'
 }
 
 process{