From 4bc1d8b368e2760a5a3cc426f72ee090e9654a87 Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Wed, 31 Jan 2024 13:18:12 -0800 Subject: [PATCH] Unpin Biopython This reverts commit "Pin Biopython 1.81" (4edf28247), which is no longer necessary as of Augur version 24.1.0. --- Dockerfile | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/Dockerfile b/Dockerfile index 040b2bd..eb5a037 100644 --- a/Dockerfile +++ b/Dockerfile @@ -337,10 +337,9 @@ RUN pip3 install phylo-treetime # Augur is an editable install so we can overlay the augur version in the image # with --volume=.../augur:/nextstrain/augur and still have it globally # accessible and importable. -# Pin Biopython 1.81: https://github.com/nextstrain/augur/issues/1373 WORKDIR /nextstrain/augur RUN /builder-scripts/download-repo https://github.com/nextstrain/augur "$(/builder-scripts/latest-augur-release-tag)" . \ - && pip3 install --editable . biopython==1.81 + && pip3 install --editable . # Add evofr for forecasting RUN pip3 install evofr