From 1815dc2a18bb2c2a8e4c7915260d77bb04ec8c91 Mon Sep 17 00:00:00 2001
From: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
Date: Sun, 27 Oct 2024 14:46:51 +0100
Subject: [PATCH] Normalise syntax

Signed-off-by: Paolo Di Tommaso <paolo.ditommaso@gmail.com>
---
 main.nf                 | 16 +++++++++-------
 modules/multiqc/main.nf |  2 +-
 2 files changed, 10 insertions(+), 8 deletions(-)

diff --git a/main.nf b/main.nf
index 5cc1280..f585d53 100755
--- a/main.nf
+++ b/main.nf
@@ -15,13 +15,6 @@ params.transcriptome = "$baseDir/data/ggal/ggal_1_48850000_49020000.Ggal71.500bp
 params.outdir = "results"
 params.multiqc = "$baseDir/multiqc"
 
-log.info """\
- R N A S E Q - N F   P I P E L I N E
- ===================================
- transcriptome: ${params.transcriptome}
- reads        : ${params.reads}
- outdir       : ${params.outdir}
- """
 
 // import modules
 include { RNASEQ } from './modules/rnaseq'
@@ -31,6 +24,15 @@ include { MULTIQC } from './modules/multiqc'
  * main script flow
  */
 workflow {
+
+log.info """\
+  R N A S E Q - N F   P I P E L I N E
+  ===================================
+  transcriptome: ${params.transcriptome}
+  reads        : ${params.reads}
+  outdir       : ${params.outdir}
+  """
+
   read_pairs_ch = channel.fromFilePairs( params.reads, checkIfExists: true ) 
   RNASEQ( params.transcriptome, read_pairs_ch )
   MULTIQC( RNASEQ.out, params.multiqc )
diff --git a/modules/multiqc/main.nf b/modules/multiqc/main.nf
index 18bdb6c..865f7b4 100644
--- a/modules/multiqc/main.nf
+++ b/modules/multiqc/main.nf
@@ -6,7 +6,7 @@ process MULTIQC {
 
     input:
     path '*'
-    path 'config'
+    path config
 
     output:
     path 'multiqc_report.html', emit: report