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Question about removing docker.userEmulation #4600

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mirpedrol opened this issue Dec 18, 2023 · 0 comments
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Question about removing docker.userEmulation #4600

mirpedrol opened this issue Dec 18, 2023 · 0 comments

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@mirpedrol
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Hello!

The option docker.userEmulation has been removed with #4596, but in nf-core we found some situations where we used this option to fix permission errors.

For example, in modules where inside containers the user is biodocker. This causes an error where .command.trace can't be created. See https://github.com/nf-core/modules/blob/master/tests/modules/nf-core/ncbitools/vecscreen/nextflow.config#L11-L16

Is there a different solution for these situations?

@nextflow-io nextflow-io locked and limited conversation to collaborators Dec 18, 2023
@pditommaso pditommaso converted this issue into discussion #4601 Dec 18, 2023

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