Error with nf-core rnaseq 2.0 #5637
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The version 2.0 of nf-core/rnaseq is about 5 years old. At the time, include statements were allowed within a workflow definition. Currenlty, Nextflow does not support that anymore. |
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Is there a way to use featureCounts for gene counts instead of salmon or rsem? |
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Hi,
nextflow run nf-core/rnaseq -r 2.0 -profile test,singularity --outdir workis giving errorwhile
nextflow run nf-core/rnaseq -r 3.18.0 -profile test,singularity --outdir workis working perfectly fine. What could be the reason?Beta Was this translation helpful? Give feedback.
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