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@bschilder bschilder released this 09 Dec 10:12
· 18 commits to master since this release
  • ctd_DescartesHuman.rds: Cell Type Dataset generated from the Descartes Human scRNA-seq atlas.
  • ctd_DescartesHuman_example.rds: Cell Type Dataset generated from the Descartes Human scRNA-seq atlas, reduced to only one cell type annotation level for fast downloading in examples.
  • ctd_HumanCellLandscape.rds: Cell Type Dataset generated from the Human Cell Landscape.
  • monarch_kg_cells.csv: Ground-truth phenotype-cell type associations extracted from the Monarch Knowledge Graph.
  • phenomix_results.tsv.gz: Merged phenotype-cell type association results generated with MSTExplorer::run_phenomix using both the Descartes Human and the Human Cell Landscape CTDs .
  • rare_disease_min_genes4_DescartesHuman.rds: Phenotype-cell type association results generated with MSTExplorer::run_phenomix using the Descartes Human CTD.
  • rare_disease_min_genes4_HumanCellLandscape.rds: Phenotype-cell type association results generated with MSTExplorer::run_phenomix using the Descartes Human CTD.
  • hpo_matrix.rds: Gene x phenotype association matrix generated with HPOExplorer::hpo_to_matrix. The matrix is filled with aggregated strength of evidence scores from GenCC.