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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(add_ctd)
export(add_logfc)
export(add_symptom_results)
export(agg_results)
export(correlation_heatmap)
export(create_dt)
export(ewce_para)
export(gen_overlap)
export(gen_results)
export(get_bg)
export(get_unfinished_list_names)
export(ggnetwork_plot_full)
export(load_example_ctd)
export(load_example_results)
export(map_celltype)
export(map_tissue)
export(merge_results)
export(plot_bar_dendro)
export(plot_bar_dendro_facets)
export(plot_bar_summary)
export(plot_celltype_severity)
export(plot_congenital_annotations)
export(plot_differential_outcomes)
export(plot_differential_outcomes_heatmap)
export(plot_frequency_bar)
export(plot_frequency_histogram)
export(plot_ontology_levels)
export(plot_report)
export(plot_results_distributions)
export(predict_celltypes)
export(prioritise_targets)
export(prioritise_targets_grid)
export(prioritise_targets_network)
export(run_congenital_enrichment)
export(run_phenomix)
export(subset_phenos)
export(subset_results)
export(summarise_results)
export(terminal_celltypes)
export(test_target_celltypes)
export(ttd_check)
export(validate_associations_correlate_ctd)
export(validate_associations_mkg)
import(GeneOverlap)
import(HPOExplorer)
import(KGExplorer)
import(data.table)
import(ggplot2)
importFrom(EWCE,bootstrap_enrichment_test)
importFrom(HPOExplorer,add_ancestor)
importFrom(HPOExplorer,add_gene_frequency)
importFrom(HPOExplorer,get_gene_lists)
importFrom(HPOExplorer,load_phenotype_to_genes)
importFrom(data.table,":=")
importFrom(data.table,fread)
importFrom(data.table,melt)
importFrom(data.table,rbindlist)
importFrom(data.table,setnafill)
importFrom(data.table,uniqueN)
importFrom(methods,show)
importFrom(orthogene,convert_orthologs)
importFrom(orthogene,create_background)
importFrom(parallel,mclapply)
importFrom(piggyback,pb_download)
importFrom(plotly,ggplotly)
importFrom(scales,pretty_breaks)
importFrom(stats,setNames)
importFrom(stringr,str_replace_all)
importFrom(stringr,str_wrap)
importFrom(utils,capture.output)
importFrom(utils,getFromNamespace)
importFrom(utils,head)
importFrom(utils,tail)