DESCRIPTION

Package: MAGMA.Celltyping
Type: Package
Title: Find Causal Cell-Types Underlying Complex Trait Genetics
Version: 2.0.14
Authors@R:
    c(person(given = "Brian",
           family = "Schilder",
           role = c("cre","aut"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191")),
     person(given = "Alan",
           family = "Murphy",
           role = c("ctb"),
           email = "alanmurph94@hotmail.com",
           comment = c(ORCID = "0000-0002-2487-8753")),
     person(given = "Julien",
           family = "Bryois",
           role = c("aut"),
           email = "julien.bryois@gmail.com",
           comment = c(ORCID = "0000-0002-4747-2166")),
     person(given = "Nathan",
           family = "Skene",
           role = c("aut"),
           email = "nathan.skene@gmail.com",
           comment = c(ORCID = "0000-0002-6807-3180")))   
Description: This R package contains code used for testing which cell types 
    can explain the heritability signal from GWAS summary statistics.
URL: https://github.com/neurogenomics/MAGMA_Celltyping
BugReports: https://github.com/neurogenomics/MAGMA_Celltyping/issues
License: GPL-3
LazyData: true
Depends: R(>= 4.1)
VignetteBuilder: knitr
biocViews: GeneExpression, Transcription, GWAS Summary Statistics,
        Genetics, scRNASeq, Single Cell RNAseq,
        BiomedicalInformatics, FunctionalGenomics
Imports:
    EWCE (>= 1.3.3),
    MungeSumstats,
    orthogene,
    XML,
    httr,
    R.utils,
    utils,
    ggdendro,
    dplyr,
    data.table,
    ggplot2,
    patchwork,
    stringr, 
    limma,
    lme4,
    parallel,
    Matrix,
    methods,
    reshape2,
    tools,
    gh
Suggests: 
    rworkflows,
    markdown,
    rmarkdown,
    knitr,
    BiocStyle,
    usethis,
    xml2,
    covr,
    testthat (>= 3.0.0), 
    piggyback,
    DT,
    biomaRt,
    ewceData
SystemRequirements: A system installation of
    [MAGMA](https://ctg.cncr.nl/software/magma) is required 
    but can be installed automatically by this package.
RoxygenNote: 7.3.2
Encoding: UTF-8
Config/testthat/edition: 3