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install_software.yml
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- hosts: all
hosts: localhost
connection: local
become: true
vars_files:
- vars/global.yml
tasks:
- name: add samtools
include: tasks/samtools.yml
tags: samtools
loop:
- 1.15.1
- 1.14
- 1.13
- 1.12
- 1.11
loop_control:
loop_var: version
- name: add htslib
include: tasks/htslib.yml
tags: htslib
loop:
- 1.15.1
- 1.14
- 1.13
- 1.12
- 1.11
loop_control:
loop_var: version
- name: add bcftools
include: tasks/bcftools.yml
tags: bcftools
loop:
- 1.14
- 1.13
- 1.12
- 1.11
loop_control:
loop_var: version
- name: add vcftools
include: tasks/vcftools.yml
tags: vcftools
loop:
- 1.16
loop_control:
loop_var: version
- name: add bwa
include: tasks/bwa.yml
tags: bwa
loop:
- 0.7.17
loop_control:
loop_var: version
- name: add minimap2
include: tasks/minimap2.yml
tags: minimap2
loop:
- "2.20"
- 2.21
- 2.22
loop_control:
loop_var: version
- name: add star
include: tasks/star.yml
tags: star
loop:
- "2.7.8a"
loop_control:
loop_var: version
- name: add bedtools
include: tasks/bedtools.yml
tags: bedtools
loop:
- "2.30.0"
loop_control:
loop_var: version
- name: add salmon
include: tasks/salmon.yml
tags: salmon
loop:
- "1.5.2"
loop_control:
loop_var: version
- name: add subread
include: tasks/subread.yml
tags: subread
loop:
- "2.0.3"
loop_control:
loop_var: version
- name: add gatk
include: tasks/gatk.yml
tags: gatk
loop:
- "4.2.0.0"
loop_control:
loop_var: version
- name: add picard
include: tasks/picard.yml
tags: picard
loop:
- "2.26.4"
loop_control:
loop_var: version
- name: add igv
include: tasks/igv.yml
tags: igv
loop:
- "2.11"
loop_control:
loop_var: version
- name: add cellranger (only latest is available for download, but for now...)
include: tasks/cellranger.yml
tags: cellranger
loop:
- "6.1.1"
loop_control:
loop_var: version
- name: add hisat2
include: tasks/hisat2.yml
tags: hisat2
loop:
# This is a fudge, as there is no logical version download link
- "2.2.1"
loop_control:
loop_var: version
- name: add macs2
include: tasks/macs2.yml
tags: macs2
loop:
- "2.2.7.1"
loop_control:
loop_var: version
- name: add fastqc
include: tasks/fastqc.yml
tags: fastqc
loop:
- "0.11.9"
loop_control:
loop_var: version
- name: add kentUtils
include: tasks/kentUtils.yml
tags: kentUtils
loop:
- "431"
loop_control:
loop_var: version
- name: add bedops
include: tasks/bedops.yml
tags: bedops
loop:
- "2.4.40"
- "2.4.35"
loop_control:
loop_var: version
- name: add trimmomatic
include: tasks/trimmomatic.yml
tags: trimmomatic
loop:
- "0.39"
loop_control:
loop_var: version