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cromwell-utils

A collection of tools for interacting with the cromwell server and the creation, and manipulations of input files for analysis.

running the cromwell server

cd <CROMWELL EXECUTION DIR>
(nohup cromwell --java-options "-Dconfig.file=/usr/local/lib/nsm-analysis/configs/cromwell_azure.conf " server  > cromwell.log 2>&1 &)