[BUG]: /bin/sh does not exist in container

[fgvieira]

Describe the bug
A clear and concise description of what the bug is.

when running:

singularity shell fcs-adaptor.sif

gives the error:

ERROR:   /bin/sh does not exist in container

[pstrope]

I just checked:

singularity shell fcs-adaptor.sif
Singularity> 

Please remove your previous sif and get a fresh one.
curl https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/FCS/releases/latest/fcs-adaptor.sif -Lo fcs-adaptor.sif

[fgvieira]

@pstrope thanks for the quick reply.
it seems the image on NCBI server works, but not the docker image:

singularity shell docker://ncbi/fcs-adaptor:0.5.4

[pstrope]

Hi @fgvieira
We did not intend for this container to be run interactively. Can you please describe your use case scenario so that we can assess our ability to support it?

[fgvieira]

I am trying to incorporate it into a snakemake workflow, using snakemake's native container interface.

[pstrope]

Thanks for letting us know. We will add it into out container and should be available in the next release.
Since singularity image works, hope that is sufficient for you until next release.