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ncbi / BAMscale Public

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pongorlorinc edited this page Aug 21, 2019 · 8 revisions

Home
Installation
Benchmarking
Brief examples
- Quantifying peaks
- Creating bigWig(s)
Detailed Manuals

Toggle table of contents Pages 18

Home
Benchmarking
Brief Examples
Detailed usage: RNA seq coverage tracks
Detailed Use: Generating Scaled Coverage Tracks
Detailed Use: OKseq RFD (Replication Fork Directionality) Track Generation
Detailed Use: Processing END seq Data
Detailed Use: Quantifying Peak Coverages from Multiple BAM Files
Detailed Use: Replication Timing log2 Coverage Ratio from Two BAM Files
Detailed Use: Smooth Coverage Tracks
Finding OK seq strand switched from the RFD track
Installation
Main_Sidebar
Manuals
Pairwise comparison of peaks [interactive plotting using R]
Peak Quantifying
Replication timing BED segments from bigwig
Scaling BAM Files from DNAseq Data

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- Quantifying peaks
- Creating bigWig(s)
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