Installation

Requirements

samtools

http://www.htslib.org/

libBigWig

Clone the libBigWig repository from GitHub: https://github.com/dpryan79/libBigWig

git clone https://github.com/dpryan79/libBigWig.git

Compile it and set the environment variables for BAMscale

cd libBigWig/
make
export LIBBIGWIG_DIR=`pwd`
export CPPFLAGS="-I $LIBBIGWIG_DIR"
export LDFLAGS="-L $LIBBIGWIG_DIR -Wl,-rpath,$LIBBIGWIG_DIR"

Installation

After compiling the libBigWig library and samtools (if not already installed) clone the BAMscale from GitHub

git clone https://github.com/ncbi/BAMscale.git

and go to the BAMscale folder to compile the program:

cd BAMscale/
make

A bin folder will be created with the BAMscale executable.