From c28f3a073a1214ed620c189a20a5f163e3cc41eb Mon Sep 17 00:00:00 2001
From: Nate Coraor <nate@bx.psu.edu>
Date: Wed, 23 Oct 2024 14:57:54 -0400
Subject: [PATCH] Delay conda init until a dependency install is attempted

---
 lib/galaxy/tool_util/deps/resolvers/conda.py | 18 ++++++++++--------
 1 file changed, 10 insertions(+), 8 deletions(-)

diff --git a/lib/galaxy/tool_util/deps/resolvers/conda.py b/lib/galaxy/tool_util/deps/resolvers/conda.py
index 450e0c1b6fdd..0a2c6893e4f5 100644
--- a/lib/galaxy/tool_util/deps/resolvers/conda.py
+++ b/lib/galaxy/tool_util/deps/resolvers/conda.py
@@ -149,11 +149,7 @@ def get_option(name):
         auto_install = _string_as_bool(get_option("auto_install"))
         self.auto_init = _string_as_bool(get_option("auto_init"))
         self.conda_context = conda_context
-        self.disabled = not galaxy.tool_util.deps.installable.ensure_installed(
-            conda_context, install_conda, self.auto_init
-        )
-        if self.auto_init and not self.disabled:
-            self.conda_context.ensure_conda_build_installed_if_needed()
+        self.disabled = False
         self.auto_install = auto_install
         self.copy_dependencies = copy_dependencies
 
@@ -189,6 +185,12 @@ def install_all(self, conda_targets: List[CondaTarget], env: str) -> bool:
         if self.read_only:
             return False
 
+        self.disabled = not galaxy.tool_util.deps.installable.ensure_installed(
+            self.conda_context, install_conda, self.auto_init
+        )
+        if self.auto_init and not self.disabled:
+            self.conda_context.ensure_conda_build_installed_if_needed()
+
         return_code = install_conda_targets(conda_targets, conda_context=self.conda_context, env_name=env)
         if return_code != 0:
             is_installed = False
@@ -221,9 +223,6 @@ def resolve_all(self, requirements: ToolRequirements, **kwds) -> List[Dependency
         if len(requirements) == 0:
             return []
 
-        if not os.path.isdir(self.conda_context.conda_prefix):
-            return []
-
         for requirement in requirements:
             if requirement.type != "package":
                 return []
@@ -252,6 +251,9 @@ def resolve_all(self, requirements: ToolRequirements, **kwds) -> List[Dependency
         if install:
             is_installed = self.install_all(conda_targets, env)
 
+        if not os.path.isdir(self.conda_context.conda_prefix):
+            return []
+
         dependencies: List[Dependency] = []
         if is_installed:
             for requirement in requirements: