From cf65d2ff2ea2133a7d19be45410c2268206d633e Mon Sep 17 00:00:00 2001 From: Juan Nunez-Iglesias Date: Tue, 25 Jun 2024 00:49:54 +1000 Subject: [PATCH 1/5] Draft release notes for 0.5.0 --- docs/release/release_0_5_0.md | 911 ++++++++++++++++++++++++++++++++++ 1 file changed, 911 insertions(+) create mode 100644 docs/release/release_0_5_0.md diff --git a/docs/release/release_0_5_0.md b/docs/release/release_0_5_0.md new file mode 100644 index 000000000..a0752836a --- /dev/null +++ b/docs/release/release_0_5_0.md @@ -0,0 +1,911 @@ +# napari 0.5.0 + +*Note: these release notes are still in draft while 0.5.0 is in alpha/release +candidate testing.* + +We're happy to announce the release of napari 0.5.0! +napari is a fast, interactive, multi-dimensional image viewer for Python. +It's designed for exploring, annotating, and analyzing multi-dimensional +images. It's built on top of Qt (for the GUI), VisPy (for performant GPU-based +rendering), and the scientific Python stack (NumPy, SciPy, and friends). + + +For more information, examples, and documentation, please visit our website: +https://napari.org/ + +## Highlights + +napari 0.5.0 is the beginning of an architectural overhaul of napari. The +architecture improvements, which are still ongoing, enable more responsive +asynchronous loading when slicing layers or panning and zooming in multiscale +2D layers ([#5816](https://github.com/napari/napari/pull/5816)). + +Other architectural changes, refactoring napari on top of +[app-model](https://app-model.readthedocs.io/en/latest/), have enabled us to +(finally ๐Ÿ˜…) implement [NAP-6](nap-6-contributable-menus), which allows +plugins to organize their commands in defined menus in the napari menubar +and application. Please read [NAP-6](nap-6-contributable-menus) for all the +juicy details, including how to request more menus if the existing ones don't +meet your needs. ๐Ÿ“‹ ([#7011](https://github.com/napari/napari/pull/7011)) + +Another important development for plugins is that we have added fields for +axis names and physical units in layers +([#6979](https://github.com/napari/napari/pull/6979)). If you implement a +reader plugin, you can now specify the names of the axes in the data that you +are reading in, and the physical units of the scale and other transformations. +Currently, napari is *not* using this information, but we will in upcoming +versions, so plugins should start providing this information if they have it. + +There's plenty of new features, too, including a polygon drawing tool when +painting labels ([#5806](https://github.com/napari/napari/pull/5806)), +pinch-to-zoom ([#5859](https://github.com/napari/napari/pull/5859)), better +ways to show/hide individual layers when exploring your data +([#5574](https://github.com/napari/napari/pull/5574)) +([#5618](https://github.com/napari/napari/pull/5618)), and more: +Over 20 new features in all and over 100 bug fixes and improvements! +Please see below for the full list of changes since 0.4.19. + +## New Features + +- Add layer slicer base class for async slicing ([napari/napari#5170](https://github.com/napari/napari/pull/5170)) +- Feature: add layer contextual menu to hide not-selected layers ([napari/napari#5574](https://github.com/napari/napari/pull/5574)) +- Feature: alt-click visibility eye to toggle show just that layer (hide others) ([napari/napari#5618](https://github.com/napari/napari/pull/5618)) +- Feature: Add action to set current label to background (with keybinding) ([napari/napari#5672](https://github.com/napari/napari/pull/5672)) +- Use Dims margin in layer slicing code ([napari/napari#5697](https://github.com/napari/napari/pull/5697)) +- Changing brush size with mouse movement while holding specified modifiers ([napari/napari#5753](https://github.com/napari/napari/pull/5753)) +- Feature: polygon drawing in the Labels layer ([napari/napari#5806](https://github.com/napari/napari/pull/5806)) +- Replace old async loading with new approach ([napari/napari#5816](https://github.com/napari/napari/pull/5816)) +- Enable pinch-to-zoom with vispy 0.13+ ([napari/napari#5859](https://github.com/napari/napari/pull/5859)) +- Keep shading light for Surface fixed relative to camera ([napari/napari#5893](https://github.com/napari/napari/pull/5893)) +- Use Request/Response pattern for Vectors layer ([napari/napari#5918](https://github.com/napari/napari/pull/5918)) +- Lock dimensions / axes while rolling ([napari/napari#5986](https://github.com/napari/napari/pull/5986)) +- Added support for features in surface layers ([napari/napari#6515](https://github.com/napari/napari/pull/6515)) +- Add creating image from clipboard ([napari/napari#6532](https://github.com/napari/napari/pull/6532)) +- Add viewer keybinds to select & show only next/prev layer and to toggle visibility of unselected ([napari/napari#6590](https://github.com/napari/napari/pull/6590)) +- Show `About napari` action on macOS application menu ([napari/napari#6666](https://github.com/napari/napari/pull/6666)) +- Add points/shapes highlight color setting to Appereance settings and preference page ([napari/napari#6689](https://github.com/napari/napari/pull/6689)) +- Include features index as key in FormatStringEncoding ([napari/napari#6703](https://github.com/napari/napari/pull/6703)) +- Reset all dims to be rollable ([napari/napari#6797](https://github.com/napari/napari/pull/6797)) +- implement copying spatial information via clipboard ([napari/napari#6864](https://github.com/napari/napari/pull/6864)) +- Add `axis_labels` and `units` to layers and transforms ([napari/napari#6979](https://github.com/napari/napari/pull/6979)) +- Alpha implementation of NAP-6 ([napari/napari#7011](https://github.com/napari/napari/pull/7011)) +- Screenshot without margins ([napari/napari#6730](https://github.com/napari/napari/pull/6730)) + +## Improvements + +- use app-model for file menu ([napari/napari#4865](https://github.com/napari/napari/pull/4865)) +- Show platform specific shortcut while editing. ([napari/napari#5064](https://github.com/napari/napari/pull/5064)) +- Add secondary keybindings to restore mnemonic (non-numeric) shortcuts in layers ([napari/napari#5155](https://github.com/napari/napari/pull/5155)) +- Add loading layer UI indicator ([napari/napari#5342](https://github.com/napari/napari/pull/5342)) +- Clean up layer slicer before integration with viewer ([napari/napari#5435](https://github.com/napari/napari/pull/5435)) +- Thick Slices (Dims as nD-box instead of nD-point) ([napari/napari#5522](https://github.com/napari/napari/pull/5522)) +- Add `font-size` to theme ([napari/napari#5607](https://github.com/napari/napari/pull/5607)) +- Feature: Background color swapping for the Label layer (extends #5672) ([napari/napari#5744](https://github.com/napari/napari/pull/5744)) +- Improve error message when user passes nonexistent plugin ([napari/napari#6016](https://github.com/napari/napari/pull/6016)) +- Reduce comparison in evented model ([napari/napari#6075](https://github.com/napari/napari/pull/6075)) +- Expose theme `font_size` as an `Appearance` setting ([napari/napari#6113](https://github.com/napari/napari/pull/6113)) +- ENH Adds `LayerList` context ([napari/napari#6165](https://github.com/napari/napari/pull/6165)) +- Add layer name to QFileDialog when only one layer is selected for saving. ([napari/napari#6360](https://github.com/napari/napari/pull/6360)) +- Use blobs instead of random integers ([napari/napari#6527](https://github.com/napari/napari/pull/6527)) +- Show notification when using shortcut to change current selected label to largest used label plus one ([napari/napari#6546](https://github.com/napari/napari/pull/6546)) +- Keep vertex selection after shape drawing finishes ([napari/napari#6640](https://github.com/napari/napari/pull/6640)) +- Add GL_MAX_3D_TEXTURE_SIZE to `napari --info` ([napari/napari#6645](https://github.com/napari/napari/pull/6645)) +- [ENH] use imageio.v3 for builtins io imread ([napari/napari#6677](https://github.com/napari/napari/pull/6677)) +- Make new labels dtype configurable ([napari/napari#6695](https://github.com/napari/napari/pull/6695)) +- Add `Optional` section to napari info with numba and triangle ([napari/napari#6710](https://github.com/napari/napari/pull/6710)) +- [ENH] Add `repeatable` kwarg to register_viewer_action and use it for slider left/right keybind ([napari/napari#6769](https://github.com/napari/napari/pull/6769)) +- "Shapes to Labels", "(float)Image to Labels": Don't pop layer being converted, append new one ([napari/napari#6859](https://github.com/napari/napari/pull/6859)) +- [enh] Transform mode: shift to snap layer rotation to 45 deg ([napari/napari#6948](https://github.com/napari/napari/pull/6948)) +- [UX/UI] flip the default for the reader plugin dialog to *not* have the Remember box checked ([napari/napari#7016](https://github.com/napari/napari/pull/7016)) +- Extend "No Qt bindings found" error message with details about conda ([napari/napari#6095](https://github.com/napari/napari/pull/6095)) +- Add convenience input validation for Labels colormaps ([napari/napari#7025](https://github.com/napari/napari/pull/7025)) +- [UI/UX] Updated polygon button icon for Shapes & Labels regular polygon tool ([napari/napari#7019](https://github.com/napari/napari/pull/7019)) + +## Performance + +- Do not copy label data when not necessary ([napari/napari#5542](https://github.com/napari/napari/pull/5542)) +- Throttle mouse move event to fix high-polling-rate input ([napari/napari#5710](https://github.com/napari/napari/pull/5710)) +- Speed up symbols validation in points layers ([napari/napari#6277](https://github.com/napari/napari/pull/6277)) +- Making Tracks layers creation and update faster ([napari/napari#6671](https://github.com/napari/napari/pull/6671)) +- Making Points layer creation and update faster ([napari/napari#6727](https://github.com/napari/napari/pull/6727)) +- Remove unnecessary early call to np.asarray before thick slicing ([napari/napari#6735](https://github.com/napari/napari/pull/6735)) +- perf: remove extra highlight calls ([napari/napari#6893](https://github.com/napari/napari/pull/6893)) + +## Bug Fixes + +- Quick silo dev version settings in a dev sub-directory ([napari/napari#5322](https://github.com/napari/napari/pull/5322)) +- Fix conda avaliability check ([napari/napari#5496](https://github.com/napari/napari/pull/5496)) +- Bugfix: PR build of docs doesn't use proper napari versioning for substitutions ([napari/napari#5557](https://github.com/napari/napari/pull/5557)) +- fix various keybinding/shortcut bugs ([napari/napari#5604](https://github.com/napari/napari/pull/5604)) +- Bugfix (macOS): Remove PYTHONEXECUTABLE from `env` for conda installs ([napari/napari#5622](https://github.com/napari/napari/pull/5622)) +- Fix waiting for multiple signals in threading progress bar test ([napari/napari#5637](https://github.com/napari/napari/pull/5637)) +- Update the sliders `axis_label` widget to be a `QElidingLineEdit` instance ([napari/napari#5665](https://github.com/napari/napari/pull/5665)) +- Fix usage of closed interval dims and unify extents calculations ([napari/napari#5751](https://github.com/napari/napari/pull/5751)) +- Add aditional guard at the end of `test_worker_may_exceed_total` ([napari/napari#5781](https://github.com/napari/napari/pull/5781)) +- Return full colormap dict in get_state ([napari/napari#5782](https://github.com/napari/napari/pull/5782)) +- Add test coverage for async slicing of points and fix rounding bug ([napari/napari#5783](https://github.com/napari/napari/pull/5783)) +- Add pydantic<2 constrains to plugin install ([napari/napari#5785](https://github.com/napari/napari/pull/5785)) +- Readd exception to event proxy ([napari/napari#5797](https://github.com/napari/napari/pull/5797)) +- Bugfix: do not allow drawing while adjusting the brush size with the mouse ([napari/napari#5842](https://github.com/napari/napari/pull/5842)) +- Amend `pydantic` constraints in the plugin manager ([napari/napari#5851](https://github.com/napari/napari/pull/5851)) +- Bugfix: Ensure bgcolor is set in __init__ of VispyCanvas ([napari/napari#5970](https://github.com/napari/napari/pull/5970)) +- Make sure `open_sample` respects `reader_plugin` for sample URIs ([napari/napari#5971](https://github.com/napari/napari/pull/5971)) +- Async refresh when experimental setting is on ([napari/napari#6008](https://github.com/napari/napari/pull/6008)) +- Add validation logic for `Dims.last_used` to prevent slider selection errors when rolling dims ([napari/napari#6024](https://github.com/napari/napari/pull/6024)) +- Update layer's loaded state before vispy and thumbnail ([napari/napari#6026](https://github.com/napari/napari/pull/6026)) +- Fix string list JSON formatting ([napari/napari#6033](https://github.com/napari/napari/pull/6033)) +- Remove 3D multiscale warning ([napari/napari#6070](https://github.com/napari/napari/pull/6070)) +- A few small improvements to async slicing ([napari/napari#6080](https://github.com/napari/napari/pull/6080)) +- Add toggle status view menu items ([napari/napari#6137](https://github.com/napari/napari/pull/6137)) +- Fix PR html stripping workflow ([napari/napari#6139](https://github.com/napari/napari/pull/6139)) +- Add test on top of #6142 ([napari/napari#6167](https://github.com/napari/napari/pull/6167)) +- Bugfix: ensure thumbnail represents canvas when multiscale ([napari/napari#6200](https://github.com/napari/napari/pull/6200)) +- Fix (N>4)D shapes. ([napari/napari#6210](https://github.com/napari/napari/pull/6210)) +- Fix typing checks in PRs ([napari/napari#6230](https://github.com/napari/napari/pull/6230)) +- convert Color to string ([napari/napari#6243](https://github.com/napari/napari/pull/6243)) +- Fix link to artifacts in update dependecies comment ([napari/napari#6270](https://github.com/napari/napari/pull/6270)) +- Fix setting shortcuts with modifier keys and only one modifier key as a shortcut on Windows/Linux ([napari/napari#6330](https://github.com/napari/napari/pull/6330)) +- Pass key event from Main window to our internal mechanism ([napari/napari#6419](https://github.com/napari/napari/pull/6419)) +- Restore old breakpointhook after console import in tests fixture ([napari/napari#6436](https://github.com/napari/napari/pull/6436)) +- FIX: Remove `None` default from `_remove_dock_widget` ([napari/napari#6481](https://github.com/napari/napari/pull/6481)) +- Fix crash on python -m napari ([napari/napari#6484](https://github.com/napari/napari/pull/6484)) +- Bugfix: ensure gamma and opacity are floats ([napari/napari#6498](https://github.com/napari/napari/pull/6498)) +- Restore quit shortcut ([napari/napari#6526](https://github.com/napari/napari/pull/6526)) +- Fix contrast limits for single layer numpy case. ([napari/napari#6535](https://github.com/napari/napari/pull/6535)) +- Fix check if plugin is available from conda ([napari/napari#6545](https://github.com/napari/napari/pull/6545)) +- Set default dtype for empty `_ImageSliceResponse` ([napari/napari#6552](https://github.com/napari/napari/pull/6552)) +- Ensure consistent layer tooltip ([napari/napari#6589](https://github.com/napari/napari/pull/6589)) +- Make Shift-Up/Down in layer list expand and contract selection ([napari/napari#6606](https://github.com/napari/napari/pull/6606)) +- Remove scaling of highlight width, fix showing shapes for uneven coordinates ([napari/napari#6629](https://github.com/napari/napari/pull/6629)) +- Fix decomposition function to properly work with more than 2x2 matrices ([napari/napari#6636](https://github.com/napari/napari/pull/6636)) +- Remove if that prevents from setting gamma in constructor ([napari/napari#6650](https://github.com/napari/napari/pull/6650)) +- [Bugfix] update selection ctx keys before showing LayerList context menu ([napari/napari#6664](https://github.com/napari/napari/pull/6664)) +- Fix offset in rendering of `TransformBox` of image/labels layers ([napari/napari#6679](https://github.com/napari/napari/pull/6679)) +- Exclude size and symbol pts attributes from linking, because they depend on number of points ([napari/napari#6687](https://github.com/napari/napari/pull/6687)) +- Fix shape layer infinite edge bug ([napari/napari#6706](https://github.com/napari/napari/pull/6706)) +- [Dockerfile] update pip before installing napari ([napari/napari#6728](https://github.com/napari/napari/pull/6728)) +- Fix npe1 samples menu building ([napari/napari#6739](https://github.com/napari/napari/pull/6739)) +- [Maint, CI] Fix upgrade_test_constraints.yml to use pyproject.toml ([napari/napari#6749](https://github.com/napari/napari/pull/6749)) +- Update description of `a`, `shift-a` points keybinds to reflect toggle ([napari/napari#6750](https://github.com/napari/napari/pull/6750)) +- [Dockerfile] add missing opengl and x11 packages to the base image ([napari/napari#6754](https://github.com/napari/napari/pull/6754)) +- Keep `qtpy` in headless tests and fix resulting failure ([napari/napari#6764](https://github.com/napari/napari/pull/6764)) +- Fix sync slicing of not yet visible layers ([napari/napari#6766](https://github.com/napari/napari/pull/6766)) +- Remove compression scheme when saving boolean arrays as tif ([napari/napari#6807](https://github.com/napari/napari/pull/6807)) +- Solving visual glitch when displaying tracks with missing timepoints ([napari/napari#6808](https://github.com/napari/napari/pull/6808)) +- Fix `napari.utils.misc.is_iterable` function ([napari/napari#6811](https://github.com/napari/napari/pull/6811)) +- Remove redundant `_view_actions.py` ([napari/napari#6821](https://github.com/napari/napari/pull/6821)) +- refresh when canvas_size_limits are changed ([napari/napari#6834](https://github.com/napari/napari/pull/6834)) +- Fix selection size when canvas limits are set for Points ([napari/napari#6853](https://github.com/napari/napari/pull/6853)) +- Ensure bounding_box lines stay up to date between 2D and 3D ([napari/napari#6855](https://github.com/napari/napari/pull/6855)) +- Fix zarr reading with unrelated files ([napari/napari#6857](https://github.com/napari/napari/pull/6857)) +- Two bug fixes concerning 4D surfaces, ie surfaces with (t, z, y, x) vertices ([napari/napari#6874](https://github.com/napari/napari/pull/6874)) +- [bugfix] Drop if guard on notification_manager to enable show_info from Jupyter ([napari/napari#6882](https://github.com/napari/napari/pull/6882)) +- [bugfix] Warn if float image data being saved to non-tiff ([napari/napari#6884](https://github.com/napari/napari/pull/6884)) +- Disable copying layer transform metadata when selecting multiple layers ([napari/napari#6887](https://github.com/napari/napari/pull/6887)) +- Fix use of scaling in vispy points ([napari/napari#6894](https://github.com/napari/napari/pull/6894)) +- Fix point highlight thickness ([napari/napari#6896](https://github.com/napari/napari/pull/6896)) +- Fix shapes mouse click and double click behavior on partial shapes ([napari/napari#6912](https://github.com/napari/napari/pull/6912)) +- Again fix translate of overlays (this time with tests) ([napari/napari#6927](https://github.com/napari/napari/pull/6927)) +- Add warning notification when connectivity errors occur in when opening the plugin manager ([napari/napari#6931](https://github.com/napari/napari/pull/6931)) +- Fix array data copy behavior for numpy 1 and 2 consistency ([napari/napari#6932](https://github.com/napari/napari/pull/6932)) +- [bugfix] Swap digit and `backspace` for Shapes & Points `delete_selected` keybinds ([napari/napari#6933](https://github.com/napari/napari/pull/6933)) +- Fix callback for `File -> Open Folder...` action ([napari/napari#6935](https://github.com/napari/napari/pull/6935)) +- fix `create_func` to respect `rename_argument` decorator ([napari/napari#6970](https://github.com/napari/napari/pull/6970)) +- Do not crash napari viewer if error happen on open file via cli ([napari/napari#6971](https://github.com/napari/napari/pull/6971)) +- Fix viewer scale bar color update ([napari/napari#6989](https://github.com/napari/napari/pull/6989)) +- Remove NumPy 2 pin, fix direct colormap with keys outside data dtype ([napari/napari#6998](https://github.com/napari/napari/pull/6998)) +- Fix switching from 2d to 3d with 2d points ([napari/napari#7004](https://github.com/napari/napari/pull/7004)) +- Fix importerror and message for lxml_html_clean ([napari/napari#7017](https://github.com/napari/napari/pull/7017)) + +## API Changes + +- Add .to_rgb_dict() to Theme class. ([napari/napari#4759](https://github.com/napari/napari/pull/4759)) +- Thick Slices (Dims as nD-box instead of nD-point) ([napari/napari#5522](https://github.com/napari/napari/pull/5522)) +- Lock dimensions / axes while rolling ([napari/napari#5986](https://github.com/napari/napari/pull/5986)) +- Remove deprecated code from Labels layer ([napari/napari#6641](https://github.com/napari/napari/pull/6641)) + +## Deprecations + +- MAINT: Remove unused function. ([napari/napari#5041](https://github.com/napari/napari/pull/5041)) +- MAINT: remove deprecated Alias. ([napari/napari#5043](https://github.com/napari/napari/pull/5043)) +- Fix typing in _app_model ([napari/napari#6059](https://github.com/napari/napari/pull/6059)) +- Rename `edge_*` attributes and references to `border_*` on points layer ([napari/napari#6402](https://github.com/napari/napari/pull/6402)) +- Add deprecation message to CallDefault function partly resolves issue#6257 ([napari/napari#6901](https://github.com/napari/napari/pull/6901)) + +## Build Tools + +- ci(dependabot): bump WebFreak001/deploy-nightly from 1.1.0 to 1.2.0 ([napari/napari#5159](https://github.com/napari/napari/pull/5159)) +- ci(dependabot): bump convictional/trigger-workflow-and-wait from 1.6.1 to 1.6.4 ([napari/napari#5293](https://github.com/napari/napari/pull/5293)) +- ci(dependabot): bump bruceadams/get-release from 1.2.3 to 1.3.2 ([napari/napari#5294](https://github.com/napari/napari/pull/5294)) +- ci(dependabot): bump convictional/trigger-workflow-and-wait from 1.6.4 to 1.6.5 ([napari/napari#5384](https://github.com/napari/napari/pull/5384)) +- ci(dependabot): bump WebFreak001/deploy-nightly from 1.2.0 to 2.0.0 ([napari/napari#5385](https://github.com/napari/napari/pull/5385)) +- ci(dependabot): bump docker/build-push-action from 3 to 4 ([napari/napari#5523](https://github.com/napari/napari/pull/5523)) +- ci(dependabot): bump toshimaru/auto-author-assign from 1.6.1 to 1.6.2 ([napari/napari#5524](https://github.com/napari/napari/pull/5524)) +- fix various keybinding/shortcut bugs ([napari/napari#5604](https://github.com/napari/napari/pull/5604)) +- ci(dependabot): bump peter-evans/create-pull-request from 4 to 5 ([napari/napari#5792](https://github.com/napari/napari/pull/5792)) +- ci(dependabot): bump actions/setup-python from 2 to 4 ([napari/napari#6201](https://github.com/napari/napari/pull/6201)) +- ci(dependabot): bump docker/login-action from 2.1.0 to 3.0.0 ([napari/napari#6263](https://github.com/napari/napari/pull/6263)) +- ci(dependabot): bump actions/checkout from 2 to 4 ([napari/napari#6264](https://github.com/napari/napari/pull/6264)) +- ci(dependabot): bump docker/build-push-action from 4 to 5 ([napari/napari#6280](https://github.com/napari/napari/pull/6280)) +- ci(dependabot): bump docker/metadata-action from 4 to 5 ([napari/napari#6282](https://github.com/napari/napari/pull/6282)) + +## Documentation + +- DOCS: Consolidate Makefiles ([napari/napari#5011](https://github.com/napari/napari/pull/5011)) +- Move docs to separate repo ([napari/napari#5216](https://github.com/napari/napari/pull/5216)) +- DOC Fix actions file docstrings ([napari/napari#5285](https://github.com/napari/napari/pull/5285)) +- Update build_docs workflow ([napari/napari#5405](https://github.com/napari/napari/pull/5405)) +- Bugfix: PR build of docs doesn't use proper napari versioning for substitutions ([napari/napari#5557](https://github.com/napari/napari/pull/5557)) +- Add link to napari/docs in Readme file. ([napari/napari#5814](https://github.com/napari/napari/pull/5814)) +- Fix typing in layers.labels ([napari/napari#5858](https://github.com/napari/napari/pull/5858)) +- DOC: fix incorrect doc in layer-base ([napari/napari#5996](https://github.com/napari/napari/pull/5996)) +- Add vortex optical flow example ([napari/napari#6041](https://github.com/napari/napari/pull/6041)) +- DOC Amend `open_sample` docstring str->URI ([napari/napari#6108](https://github.com/napari/napari/pull/6108)) +- DOC: misc syntax/typos ([napari/napari#6387](https://github.com/napari/napari/pull/6387)) +- DOC: misc fixes ([napari/napari#6429](https://github.com/napari/napari/pull/6429)) +- Change `vortex.py` example to enable its page build in the documentation ([napari/napari#6475](https://github.com/napari/napari/pull/6475)) +- Fix generation of layer creation functions docstrings ([napari/napari#6558](https://github.com/napari/napari/pull/6558)) +- Update docs constraints for napari-sphinx-theme 0.3.0 ([napari/napari#6598](https://github.com/napari/napari/pull/6598)) +- Update docstrings in `colormap_utils` for seed parameter effective range ([napari/napari#6688](https://github.com/napari/napari/pull/6688)) +- Update shapes.py add_rectangle and add_ellipse docstrings ([napari/napari#6704](https://github.com/napari/napari/pull/6704)) +- Update docstring for _get_console method of QtViewer class ([napari/napari#6723](https://github.com/napari/napari/pull/6723)) +- DOC Explicitly describe use of `show` in `make_napari_viewer` ([napari/napari#6724](https://github.com/napari/napari/pull/6724)) +- DOC Add info to `make_napari_viewer` docstring ([napari/napari#6774](https://github.com/napari/napari/pull/6774)) +- Expose NotebookScreenshot docstring ([napari/napari#6833](https://github.com/napari/napari/pull/6833)) +- DOC Update `_mock_app` docstring ([napari/napari#6903](https://github.com/napari/napari/pull/6903)) +- DOC Update menu action file docstrings ([napari/napari#6904](https://github.com/napari/napari/pull/6904)) +- Front-load core devs in citation.cff, sorted by commits ([napari/napari#6949](https://github.com/napari/napari/pull/6949)) +- Update CITATION.cff with contributors for 0.5.0 ([napari/napari#6958](https://github.com/napari/napari/pull/6958)) +- Remove examples from docs repo and use main repo instead ([napari/docs#1](https://github.com/napari/docs/pull/1)) +- Add build_docs action to PRs ([napari/docs#6](https://github.com/napari/docs/pull/6)) +- Fix examples path in build_docs PR workflow ([napari/docs#8](https://github.com/napari/docs/pull/8)) +- Updated issue and PR templates for this repo ([napari/docs#36](https://github.com/napari/docs/pull/36)) +- how to use annotation with create_widget ([napari/docs#68](https://github.com/napari/docs/pull/68)) +- Fix docs deployment with gallery env variable ([napari/docs#70](https://github.com/napari/docs/pull/70)) +- Switch from GabrielBB/xvfb-action to aganders3/headless-gui ([napari/docs#94](https://github.com/napari/docs/pull/94)) +- Update deploy_docs.yml to use metadata to use proper napari version substitution ([napari/docs#99](https://github.com/napari/docs/pull/99)) +- CircleCI setup for PR documentation previews ([napari/docs#104](https://github.com/napari/docs/pull/104)) +- Change `CIRCLECI_TOKEN` to `GITHUB_TOKEN` in `circleci.yml` workflow file. ([napari/docs#108](https://github.com/napari/docs/pull/108)) +- Documentation for alt-click visibility icon to show only that layer (napari/napari#5618) ([napari/docs#121](https://github.com/napari/docs/pull/121)) +- Add pr dependency check ([napari/docs#124](https://github.com/napari/docs/pull/124)) +- Layer documentation enhancements ([napari/docs#125](https://github.com/napari/docs/pull/125)) +- Using Dask and Napari to view and process 100ยตm resolution human brain dataset ([napari/docs#132](https://github.com/napari/docs/pull/132)) +- Fix CircleCI token name and remove outdated artifact action ([napari/docs#136](https://github.com/napari/docs/pull/136)) +- Add instructions on how to check preview of built docs ([napari/docs#140](https://github.com/napari/docs/pull/140)) +- Add documentation of udpate tokens for automated actions. ([napari/docs#144](https://github.com/napari/docs/pull/144)) +- Use constraints file when installing dependencies to build docs ([napari/docs#162](https://github.com/napari/docs/pull/162)) +- Fix build and deploy workflow ([napari/docs#164](https://github.com/napari/docs/pull/164)) +- Update README to display CZI logo for dark and light GitHub themes ([napari/docs#165](https://github.com/napari/docs/pull/165)) +- Use constraints during build docs on circleCI ([napari/docs#167](https://github.com/napari/docs/pull/167)) +- Fix closing of html comment in PR template ([napari/docs#168](https://github.com/napari/docs/pull/168)) +- Add documentation for #5806 ([napari/docs#177](https://github.com/napari/docs/pull/177)) +- Update Viewer tutorial for extra layer contextual menu visibility options (napari/#5574) ([napari/docs#183](https://github.com/napari/docs/pull/183)) +- Use python version range instead of min version ([napari/docs#194](https://github.com/napari/docs/pull/194)) +- Fix trailing whitespace with pre-commit ([napari/docs#198](https://github.com/napari/docs/pull/198)) +- Add extra note for Windows and Make to avoid running `rm -rf C:\Users` ([napari/docs#201](https://github.com/napari/docs/pull/201)) +- Plugin docs restructure of content ([napari/docs#203](https://github.com/napari/docs/pull/203)) +- Add documentation how to avoid fickering windows when running test locally ([napari/docs#215](https://github.com/napari/docs/pull/215)) +- Run PR depenecy check on every comment added to PR ([napari/docs#216](https://github.com/napari/docs/pull/216)) +- Adds guide on CI setup for docs building and website deployment ([napari/docs#220](https://github.com/napari/docs/pull/220)) +- Add TOML lexer to pygments set up ([napari/docs#229](https://github.com/napari/docs/pull/229)) +- Remove items not relevant to documentation in PR template ([napari/docs#234](https://github.com/napari/docs/pull/234)) +- [Content] Add docs for the new lock dims of the roll button ([napari/docs#242](https://github.com/napari/docs/pull/242)) +- Fix pydantic import ([napari/docs#255](https://github.com/napari/docs/pull/255)) +- Add option to fail docs build on gallery example execution error ([napari/docs#256](https://github.com/napari/docs/pull/256)) +- Uniform circleCI and build_docs workflows across repositories ([napari/docs#266](https://github.com/napari/docs/pull/266)) +- Improve next steps part of installation guide ([napari/docs#275](https://github.com/napari/docs/pull/275)) +- Re-apply: Image layers can't have converted data type ([napari/docs#276](https://github.com/napari/docs/pull/276)) +- Add section on extending napari ([napari/docs#286](https://github.com/napari/docs/pull/286)) +- Add env constraint to 'deploy_docs' workflow ([napari/docs#287](https://github.com/napari/docs/pull/287)) +- Add to console details to "How to launch `napari`" ([napari/docs#292](https://github.com/napari/docs/pull/292)) +- Add mp4 and png fallback to webm videos ([napari/docs#298](https://github.com/napari/docs/pull/298)) +- Use reference labels instead of paths ([napari/docs#301](https://github.com/napari/docs/pull/301)) +- Add theme page to 'how tos' ([napari/docs#302](https://github.com/napari/docs/pull/302)) +- Expand headless env testing in "Test organization" ([napari/docs#303](https://github.com/napari/docs/pull/303)) +- Add/improve documentation about napari's software architecture ([napari/docs#304](https://github.com/napari/docs/pull/304)) +- Replace references to 'edge' attributes with 'border' in Points docs ([napari/docs#306](https://github.com/napari/docs/pull/306)) +- Add documentation for `New from clipboard` feature ([napari/docs#307](https://github.com/napari/docs/pull/307)) +- NAP-6: Updates after discussion and review ([napari/docs#312](https://github.com/napari/docs/pull/312)) +- Use tabs for the install as Python package guide ([napari/docs#313](https://github.com/napari/docs/pull/313)) +- Fix execution of magicgui guide ([napari/docs#314](https://github.com/napari/docs/pull/314)) +- Exclude inherited tqdm members from documentation ([napari/docs#316](https://github.com/napari/docs/pull/316)) +- Re-organise 'Contributing' section ([napari/docs#318](https://github.com/napari/docs/pull/318)) +- Update packaging guide by removing outdated `constructor` fork details ([napari/docs#319](https://github.com/napari/docs/pull/319)) +- Update app-model documentation ([napari/docs#325](https://github.com/napari/docs/pull/325)) +- Remove sphinx pin to rely on upstream constraints ([napari/docs#334](https://github.com/napari/docs/pull/334)) +- Move note after screeenshot in install guide ([napari/docs#335](https://github.com/napari/docs/pull/335)) +- Update links to napari hub guide ([napari/docs#336](https://github.com/napari/docs/pull/336)) +- Fix broken links and references ([napari/docs#338](https://github.com/napari/docs/pull/338)) +- Add announcement banner html to enable config ([napari/docs#341](https://github.com/napari/docs/pull/341)) +- Add release notes for 0.4.19 ([napari/docs#346](https://github.com/napari/docs/pull/346)) +- Update version switcher for 0.4.19 release ([napari/docs#347](https://github.com/napari/docs/pull/347)) +- Add 0.4.19 to toc ([napari/docs#349](https://github.com/napari/docs/pull/349)) +- Fix execution of magicgui guide (2) ([napari/docs#351](https://github.com/napari/docs/pull/351)) +- Replace survey with help banner ([napari/docs#356](https://github.com/napari/docs/pull/356)) +- [ENH] Add napari.utils.transforms to API docs ([napari/docs#359](https://github.com/napari/docs/pull/359)) +- [Content] Add docs for napari/napari#6590 shift-option arrows to cycle through layers one at a time ([napari/docs#360](https://github.com/napari/docs/pull/360)) +- Clarify optionality of type annotations for writing a plugin ([napari/docs#367](https://github.com/napari/docs/pull/367)) +- Dynamicly calculate supported python version range ([napari/docs#368](https://github.com/napari/docs/pull/368)) +- Add info on testing `QWidget` visibility ([napari/docs#370](https://github.com/napari/docs/pull/370)) +- Summary of local setup for quickstart for devs ([napari/docs#372](https://github.com/napari/docs/pull/372)) +- Add info about tests that require window focus and `pyautogui` permissions setup on macOS ([napari/docs#375](https://github.com/napari/docs/pull/375)) +- Inlcude docstring of `make_napari_viewer` in `testing.md` ([napari/docs#378](https://github.com/napari/docs/pull/378)) +- Add cross reference to other testing info in `testing.md` ([napari/docs#379](https://github.com/napari/docs/pull/379)) +- Add note on using str instead of importing for napari type annot in plugins ([napari/docs#381](https://github.com/napari/docs/pull/381)) +- Use intersphinx for magicgui objects in `magicgui.md` ([napari/docs#382](https://github.com/napari/docs/pull/382)) +- Fix napari.org rendering ([napari/docs#386](https://github.com/napari/docs/pull/386)) +- Fix doc preview in PR CI ([napari/docs#389](https://github.com/napari/docs/pull/389)) +- Update `docs_deployment.md` and add paths to workflow ([napari/docs#390](https://github.com/napari/docs/pull/390)) +- Fix ALL Sphinx warnings ([napari/docs#393](https://github.com/napari/docs/pull/393)) +- Add note about autogeneration of plugin docs ([napari/docs#395](https://github.com/napari/docs/pull/395)) +- Add page on `magicgui` type registration ([napari/docs#399](https://github.com/napari/docs/pull/399)) +- Minor update to instructions for updating tokens ([napari/docs#401](https://github.com/napari/docs/pull/401)) +- Fix typo in `app_model.md` ([napari/docs#402](https://github.com/napari/docs/pull/402)) +- Update `app-model` doc with new information about `_mock_app` fixture ([napari/docs#403](https://github.com/napari/docs/pull/403)) +- Fixes display of inherited members of classes ([napari/docs#404](https://github.com/napari/docs/pull/404)) +- Improve our 'Creating widgets' section ([napari/docs#407](https://github.com/napari/docs/pull/407)) +- Fix broken magicgui and app-model docs links ([napari/docs#410](https://github.com/napari/docs/pull/410)) +- Add Python resources to Installation tutorial ([napari/docs#411](https://github.com/napari/docs/pull/411)) +- Update IFP rep on the SC to be Kyle and not Nick ([napari/docs#412](https://github.com/napari/docs/pull/412)) +- [Content] clarify Image to labels, Labels to Image, and add docs for shapes to labels behavior ([napari/docs#414](https://github.com/napari/docs/pull/414)) +- Update where app-model actions/providers/processors live in codebase ([napari/docs#416](https://github.com/napari/docs/pull/416)) +- Update conda section of install docs ([napari/docs#417](https://github.com/napari/docs/pull/417)) +- MacOS -> macOS ([napari/docs#418](https://github.com/napari/docs/pull/418)) +- Replace use of properties with features ([napari/docs#425](https://github.com/napari/docs/pull/425)) +- DOC Update finding submenu action in app-model ([napari/docs#426](https://github.com/napari/docs/pull/426)) + +## Other Pull Requests + +- Add tests to cover slicing behavior when changing layers and data ([napari/napari#4819](https://github.com/napari/napari/pull/4819)) +- Add examples to remote sample data & synthetic tests [for async work] ([napari/napari#4987](https://github.com/napari/napari/pull/4987)) +- Use app model for plugins menu ([napari/napari#4991](https://github.com/napari/napari/pull/4991)) +- MAINT: Misc unused variables and import. ([napari/napari#5051](https://github.com/napari/napari/pull/5051)) +- Use same name in yml file and test name. ([napari/napari#5065](https://github.com/napari/napari/pull/5065)) +- MAINT: Remove QtStateButton, marked for removal in 0.4.14 ([napari/napari#5066](https://github.com/napari/napari/pull/5066)) +- Update config directory paths for perfmon tools ([napari/napari#5081](https://github.com/napari/napari/pull/5081)) +- Use app-model keybindings internally ([napari/napari#5103](https://github.com/napari/napari/pull/5103)) +- Ignore tags directory generated by Sphinx build ([napari/napari#5104](https://github.com/napari/napari/pull/5104)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5105](https://github.com/napari/napari/pull/5105)) +- Clarify package installer interface with abstract base class, and Pip/Conda subclasses (continued) ([napari/napari#5124](https://github.com/napari/napari/pull/5124)) +- MAINT: comment out macos briefcase bundle ([napari/napari#5144](https://github.com/napari/napari/pull/5144)) +- Use nightly.link to add comment to docs artifacts on PRs ([napari/napari#5148](https://github.com/napari/napari/pull/5148)) +- Attempt to fix benchmark failing. ([napari/napari#5175](https://github.com/napari/napari/pull/5175)) +- MAINT: Use positional only to make code a bit more idiomatic. ([napari/napari#5179](https://github.com/napari/napari/pull/5179)) +- Update vendoring tool to check on matplotlib colormap ([napari/napari#5181](https://github.com/napari/napari/pull/5181)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5197](https://github.com/napari/napari/pull/5197)) +- Update plugin dialog design & functionality to add conda install ([napari/napari#5198](https://github.com/napari/napari/pull/5198)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5237](https://github.com/napari/napari/pull/5237)) +- Benchmark PR reporting fix ([napari/napari#5246](https://github.com/napari/napari/pull/5246)) +- Image slice request and response for async slicing ([napari/napari#5259](https://github.com/napari/napari/pull/5259)) +- Points slice request and response for new async slicing ([napari/napari#5264](https://github.com/napari/napari/pull/5264)) +- Do not use random shapes in napari_builtins conftest fixtures ([napari/napari#5287](https://github.com/napari/napari/pull/5287)) +- Add async slicing "force sync" ([napari/napari#5299](https://github.com/napari/napari/pull/5299)) +- Use plugin display_name for widget parent menu ([napari/napari#5305](https://github.com/napari/napari/pull/5305)) +- update benchmark ci ([napari/napari#5309](https://github.com/napari/napari/pull/5309)) +- Fix text label translation ([napari/napari#5321](https://github.com/napari/napari/pull/5321)) +- Exclude vendored things from absolutify imports ([napari/napari#5324](https://github.com/napari/napari/pull/5324)) +- Add test coverage for async slicing of labels ([napari/napari#5325](https://github.com/napari/napari/pull/5325)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5336](https://github.com/napari/napari/pull/5336)) +- Fully specify cache path in pip install job ([napari/napari#5357](https://github.com/napari/napari/pull/5357)) +- Add pre commit steep for remove unused imports ([napari/napari#5359](https://github.com/napari/napari/pull/5359)) +- Add titles and tags to new gallery examples ([napari/napari#5364](https://github.com/napari/napari/pull/5364)) +- Add GUI test coverage for changes to Labels.show_selected_label ([napari/napari#5372](https://github.com/napari/napari/pull/5372)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5375](https://github.com/napari/napari/pull/5375)) +- Calculate text positions for constant strings ([napari/napari#5387](https://github.com/napari/napari/pull/5387)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5392](https://github.com/napari/napari/pull/5392)) +- Configure `fail_on_no_env` for `tox-gh-actions` ([napari/napari#5408](https://github.com/napari/napari/pull/5408)) +- Wait until a blocked test task is actually running ([napari/napari#5424](https://github.com/napari/napari/pull/5424)) +- Refactor: Qt viewer and VispyCanvas ([napari/napari#5432](https://github.com/napari/napari/pull/5432)) +- Installation: don't include pyqt5 (from [all]) in [dev] installs ([napari/napari#5438](https://github.com/napari/napari/pull/5438)) +- Add auto canceling previous test after a new PR commit ([napari/napari#5453](https://github.com/napari/napari/pull/5453)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5462](https://github.com/napari/napari/pull/5462)) +- Add digital watermark to napari PNG screenshots ([napari/napari#5494](https://github.com/napari/napari/pull/5494)) +- MAINT: add time limit for CI. ([napari/napari#5495](https://github.com/napari/napari/pull/5495)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5502](https://github.com/napari/napari/pull/5502)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5518](https://github.com/napari/napari/pull/5518)) +- MAINT: Fix vendoring script and track closest commit. ([napari/napari#5537](https://github.com/napari/napari/pull/5537)) +- Fix translation checks in CI ([napari/napari#5562](https://github.com/napari/napari/pull/5562)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5575](https://github.com/napari/napari/pull/5575)) +- Maint: Add time limit to --pre and comprehensive tests. ([napari/napari#5597](https://github.com/napari/napari/pull/5597)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5606](https://github.com/napari/napari/pull/5606)) +- Bugfix: ensure `tool` is set to conda for conda-installed packages ([napari/napari#5624](https://github.com/napari/napari/pull/5624)) +- FIX: fix translation checking script. ([napari/napari#5626](https://github.com/napari/napari/pull/5626)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5627](https://github.com/napari/napari/pull/5627)) +- [maint] Update translation string wizard to offer auto-suggestions ([napari/napari#5643](https://github.com/napari/napari/pull/5643)) +- Update PR template to front-load issue references ([napari/napari#5659](https://github.com/napari/napari/pull/5659)) +- MAINT: Move suspected segfaulting test into its own file. ([napari/napari#5676](https://github.com/napari/napari/pull/5676)) +- Unvendor lazy_loader ([napari/napari#5681](https://github.com/napari/napari/pull/5681)) +- Add CircleCI to enable docs preview on PRs ([napari/napari#5714](https://github.com/napari/napari/pull/5714)) +- Check that release labels are added to each PR ([napari/napari#5733](https://github.com/napari/napari/pull/5733)) +- [MAINT] Remove plugin manager source (move to napari/napari-plugin-manager) ([napari/napari#5743](https://github.com/napari/napari/pull/5743)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5765](https://github.com/napari/napari/pull/5765)) +- Use `GITHUB_TOKEN` to create test dependecies PR ([napari/napari#5774](https://github.com/napari/napari/pull/5774)) +- Use fine grained personal token for test contrains and vendored update ([napari/napari#5777](https://github.com/napari/napari/pull/5777)) +- Add tests for io utils to save images ([napari/napari#5780](https://github.com/napari/napari/pull/5780)) +- Use tox-min-req for min-req tests ([napari/napari#5784](https://github.com/napari/napari/pull/5784)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5793](https://github.com/napari/napari/pull/5793)) +- Update README to display CZI logo for dark and light GitHub themes ([napari/napari#5800](https://github.com/napari/napari/pull/5800)) +- Improve discoverability of napari/docs repository. ([napari/napari#5821](https://github.com/napari/napari/pull/5821)) +- MAINT: Add backend info to CI comprehensive test names ([napari/napari#5822](https://github.com/napari/napari/pull/5822)) +- Move mypy config to pyproject.toml ([napari/napari#5825](https://github.com/napari/napari/pull/5825)) +- Fix some typing in colormap utils ([napari/napari#5832](https://github.com/napari/napari/pull/5832)) +- Improve type annotation for image layer and related ([napari/napari#5843](https://github.com/napari/napari/pull/5843)) +- Fix typing errors in layers.image ([napari/napari#5852](https://github.com/napari/napari/pull/5852)) +- Add tests/more tests to widgets with low coverage ([napari/napari#5864](https://github.com/napari/napari/pull/5864)) +- Fix type checking for layers.vectors ([napari/napari#5870](https://github.com/napari/napari/pull/5870)) +- Fix type checking in layers.surface ([napari/napari#5871](https://github.com/napari/napari/pull/5871)) +- test: [Automatic] Constraints upgrades: `dask`, `hypothesis`, `imageio`, `napari-svg`, `pandas`, `pint`, `pydantic`, `pytest-cov`, `tensorstore` ([napari/napari#5881](https://github.com/napari/napari/pull/5881)) +- Use a nightly pypi index for numpy & scipy, used by the --pre build ([napari/napari#5882](https://github.com/napari/napari/pull/5882)) +- Remove pycln (redundant with ruff F401 rule) ([napari/napari#5887](https://github.com/napari/napari/pull/5887)) +- Mock QtConsole in tests ([napari/napari#5890](https://github.com/napari/napari/pull/5890)) +- Consistent types for vector inputs/outputs in base layer ([napari/napari#5892](https://github.com/napari/napari/pull/5892)) +- MAINT: Fix more typing and enable mypy on more files. ([napari/napari#5897](https://github.com/napari/napari/pull/5897)) +- Add __all__ to qthreading and progress ([napari/napari#5898](https://github.com/napari/napari/pull/5898)) +- Fix typing in translations ([napari/napari#5900](https://github.com/napari/napari/pull/5900)) +- ENH: Use dict to set `MenuID` in view actions ([napari/napari#5903](https://github.com/napari/napari/pull/5903)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5906](https://github.com/napari/napari/pull/5906)) +- [Maint] CI: Use `RUNNER_OS` instead of `PLATFORM` ([napari/napari#5907](https://github.com/napari/napari/pull/5907)) +- MAINT: GitHub action Timeout increased by 5 minutes ([napari/napari#5934](https://github.com/napari/napari/pull/5934)) +- Some napari.utils typing fixes ([napari/napari#5936](https://github.com/napari/napari/pull/5936)) +- Add documentation, enhancement and maintenance fields to PR template ([napari/napari#5943](https://github.com/napari/napari/pull/5943)) +- Add docs constraints file ([napari/napari#5988](https://github.com/napari/napari/pull/5988)) +- Fix optional arg typing in napari._qt.containers ([napari/napari#6004](https://github.com/napari/napari/pull/6004)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6009](https://github.com/napari/napari/pull/6009)) +- Partially fix translations testing ([napari/napari#6014](https://github.com/napari/napari/pull/6014)) +- Fix typing in napari.layers.base ([napari/napari#6028](https://github.com/napari/napari/pull/6028)) +- Add test for `QtToolTipEventFilter` ([napari/napari#6066](https://github.com/napari/napari/pull/6066)) +- Pin numpy below 2 ([napari/napari#6073](https://github.com/napari/napari/pull/6073)) +- Fix typing in napari.components.overlays ([napari/napari#6076](https://github.com/napari/napari/pull/6076)) +- Fix transform_utils typing ([napari/napari#6082](https://github.com/napari/napari/pull/6082)) +- Task: remove html comments from pr description ([napari/napari#6086](https://github.com/napari/napari/pull/6086)) +- Reduce noise in PR template ([napari/napari#6092](https://github.com/napari/napari/pull/6092)) +- Allow contributors to update test constraints using a comment ([napari/napari#6101](https://github.com/napari/napari/pull/6101)) +- Exclude ... from coverage ([napari/napari#6103](https://github.com/napari/napari/pull/6103)) +- Pass `QT_QPA_PLATFORM` through tox configuration ([napari/napari#6110](https://github.com/napari/napari/pull/6110)) +- Remove unused parameters from private function. ([napari/napari#6131](https://github.com/napari/napari/pull/6131)) +- Fix typing in napari.utils.perf ([napari/napari#6132](https://github.com/napari/napari/pull/6132)) +- Use faster version of black ([napari/napari#6133](https://github.com/napari/napari/pull/6133)) +- Fix some typing in napari.utils.events ([napari/napari#6142](https://github.com/napari/napari/pull/6142)) +- test: [Automatic] Constraints upgrades: `hypothesis`, `magicgui`, `psygnal`, `tensorstore`, `tifffile`, `tqdm`, `virtualenv` ([napari/napari#6143](https://github.com/napari/napari/pull/6143)) +- Update PR editing script to remove html. ([napari/napari#6144](https://github.com/napari/napari/pull/6144)) +- Update PR editing action script to remove double empty lines in PR description ([napari/napari#6150](https://github.com/napari/napari/pull/6150)) +- More typing of napari/utils. ([napari/napari#6152](https://github.com/napari/napari/pull/6152)) +- Update typing informations in `_app_model/injection/_processors.py` and `components/layerlist.py` ([napari/napari#6153](https://github.com/napari/napari/pull/6153)) +- Fix types in 'napari.utils.colormaps.categorical_colormap' ([napari/napari#6154](https://github.com/napari/napari/pull/6154)) +- Fix incorrect types in color_transformations. ([napari/napari#6155](https://github.com/napari/napari/pull/6155)) +- Refactor test running for reduce CI time ([napari/napari#6156](https://github.com/napari/napari/pull/6156)) +- Check if milestone and label is added to PR ([napari/napari#6158](https://github.com/napari/napari/pull/6158)) +- Enable type-checking for `napari.components.experimental`. ([napari/napari#6166](https://github.com/napari/napari/pull/6166)) +- Fix typing and clearer code in evented-set. ([napari/napari#6168](https://github.com/napari/napari/pull/6168)) +- Fix and enable typing of selectable lists ([napari/napari#6169](https://github.com/napari/napari/pull/6169)) +- Add PyQt6 to tox -e mypy ([napari/napari#6170](https://github.com/napari/napari/pull/6170)) +- Remove an "if" that prevents proper run of "upgrade dependecies" wokflow if triggered by comment ([napari/napari#6171](https://github.com/napari/napari/pull/6171)) +- Misc typing fixes ([napari/napari#6172](https://github.com/napari/napari/pull/6172)) +- Fix typo in path to file for upgrade dependencies ([napari/napari#6173](https://github.com/napari/napari/pull/6173)) +- Update constraints upgrade script to run with appropriate events ([napari/napari#6175](https://github.com/napari/napari/pull/6175)) +- Add missed "and milestone" ([napari/napari#6176](https://github.com/napari/napari/pull/6176)) +- Do not clone repository to subdirectory in examples test ([napari/napari#6181](https://github.com/napari/napari/pull/6181)) +- Add a timeout to some GH actions tests. ([napari/napari#6187](https://github.com/napari/napari/pull/6187)) +- Fix typing in components.viewer_model ([napari/napari#6188](https://github.com/napari/napari/pull/6188)) +- DOC Add comment in `_instantiate_dock_widget` ([napari/napari#6189](https://github.com/napari/napari/pull/6189)) +- Fix some typing in napari.components ([napari/napari#6203](https://github.com/napari/napari/pull/6203)) +- Allow to use all ViewerModel kwargs in Viewer constructor ([napari/napari#6209](https://github.com/napari/napari/pull/6209)) +- Fix upgrade dependencies wokflow ([napari/napari#6211](https://github.com/napari/napari/pull/6211)) +- Replace more np.all( ... = ...) with np.array_equal ([napari/napari#6213](https://github.com/napari/napari/pull/6213)) +- cleanup np.all(... == ...) from test_points.py ([napari/napari#6217](https://github.com/napari/napari/pull/6217)) +- remove np.all(... == ...) in test_surface.py ([napari/napari#6218](https://github.com/napari/napari/pull/6218)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6221](https://github.com/napari/napari/pull/6221)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6229](https://github.com/napari/napari/pull/6229)) +- Move `test_file_menu.py` to new app model location ([napari/napari#6233](https://github.com/napari/napari/pull/6233)) +- More removal of np.all(... == ...) ([napari/napari#6238](https://github.com/napari/napari/pull/6238)) +- Remove sphinx dependency from defaults dependecies ([napari/napari#6239](https://github.com/napari/napari/pull/6239)) +- MAINT: Use scipy builtins rotation to compute quaternions. ([napari/napari#6241](https://github.com/napari/napari/pull/6241)) +- MAINT: Replace `assert np.all(? == ?)` with `assert_array_equal` ([napari/napari#6244](https://github.com/napari/napari/pull/6244)) +- Fix some typing in napari._vispy ([napari/napari#6245](https://github.com/napari/napari/pull/6245)) +- Type _WeakCounter ([napari/napari#6246](https://github.com/napari/napari/pull/6246)) +- Fix typing in napari.utils.theme ([napari/napari#6247](https://github.com/napari/napari/pull/6247)) +- remove: napari.qt.progress (deprecated in 0.4.11) ([napari/napari#6252](https://github.com/napari/napari/pull/6252)) +- Restore 'V' keybinding for layer visibiltiy toggle ([napari/napari#6261](https://github.com/napari/napari/pull/6261)) +- Update `app-model`, `dask`, `fsspec`, `hypothesis`, `imageio`, `ipython`, `jsonschema`, `matplotlib`, `numpy`, `pandas`, `pillow`, `psygnal`, `pytest`, `qtconsole`, `qtpy`, `rich`, `scipy`, `superqt`, `tensorstore`, `tifffile`, `virtualenv`, `xarray`, `zarr` ([napari/napari#6265](https://github.com/napari/napari/pull/6265)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6266](https://github.com/napari/napari/pull/6266)) +- Fix nitpicks in `id` and `title` `Action` fields in samples menu ([napari/napari#6267](https://github.com/napari/napari/pull/6267)) +- ENH Make `_open_preferences_dialog` return `PreferencesDialog` ([napari/napari#6269](https://github.com/napari/napari/pull/6269)) +- Bump app-model ([napari/napari#6271](https://github.com/napari/napari/pull/6271)) +- Use `MenuID` in sample menu tests ([napari/napari#6273](https://github.com/napari/napari/pull/6273)) +- Fix benchmark suite virtualenvs, and disable broken memory benchmarks ([napari/napari#6278](https://github.com/napari/napari/pull/6278)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6287](https://github.com/napari/napari/pull/6287)) +- Adding helper function for events and property deprecation ([napari/napari#6288](https://github.com/napari/napari/pull/6288)) +- Fix labels for dependabot ([napari/napari#6290](https://github.com/napari/napari/pull/6290)) +- [Maintenance] Fix missing v in the docker-login action version ([napari/napari#6291](https://github.com/napari/napari/pull/6291)) +- MAINT: Remove auto-author-assign ([napari/napari#6292](https://github.com/napari/napari/pull/6292)) +- Remove a few of the last instance of np.all(? == ?). ([napari/napari#6293](https://github.com/napari/napari/pull/6293)) +- Enable memory benchmarks for layers ([napari/napari#6295](https://github.com/napari/napari/pull/6295)) +- [Maint] Add zarr to optional dependencies in pyproject.toml ([napari/napari#6297](https://github.com/napari/napari/pull/6297)) +- Set permissions to `allow upgrate_test_contstraints` work ([napari/napari#6298](https://github.com/napari/napari/pull/6298)) +- Revert "MAINT: Use scipy builtins rotation to compute quaternions. (#6241)" ([napari/napari#6299](https://github.com/napari/napari/pull/6299)) +- Add pystack to debug hanging linux test ([napari/napari#6310](https://github.com/napari/napari/pull/6310)) +- [Maintenance] Update bug_report template to add napari --info ([napari/napari#6312](https://github.com/napari/napari/pull/6312)) +- Use yaml for bug report Issue template ([napari/napari#6313](https://github.com/napari/napari/pull/6313)) +- Add pre-commit check for basic formattings bugs ([napari/napari#6315](https://github.com/napari/napari/pull/6315)) +- Add coverage report upload to comprehensive test ([napari/napari#6316](https://github.com/napari/napari/pull/6316)) +- Update `dask`, `hypothesis`, `numpy`, `pillow`, `pretend`, `psutil`, `pyqt5`, `pyqt6`, `pyside6`, `superqt` ([napari/napari#6322](https://github.com/napari/napari/pull/6322)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6323](https://github.com/napari/napari/pull/6323)) +- Fix pre-commit configuration ([napari/napari#6328](https://github.com/napari/napari/pull/6328)) +- Directly set author of commit in vendored workflow ([napari/napari#6329](https://github.com/napari/napari/pull/6329)) +- Bump Mypy and some type fixes. ([napari/napari#6332](https://github.com/napari/napari/pull/6332)) +- Add 'raise' option back to `strict_qt` in `make_napari_viewer` ([napari/napari#6335](https://github.com/napari/napari/pull/6335)) +- Rename test_strings to validate_strings to stop confusing pytest ([napari/napari#6338](https://github.com/napari/napari/pull/6338)) +- "no-commit-to-branch" is preventing contribution. ([napari/napari#6341](https://github.com/napari/napari/pull/6341)) +- MAINT: Refine Mypy config for qtpy. ([napari/napari#6342](https://github.com/napari/napari/pull/6342)) +- Disable ptrace protection to make pytest-pystack work ([napari/napari#6343](https://github.com/napari/napari/pull/6343)) +- Fix labeler configuration ([napari/napari#6344](https://github.com/napari/napari/pull/6344)) +- Add codecov token to reduce propability of fail to upload from main branch ([napari/napari#6346](https://github.com/napari/napari/pull/6346)) +- Fix upstream deprecation: change `np.alltrue` to `np.array_equiv` ([napari/napari#6347](https://github.com/napari/napari/pull/6347)) +- Maint: mypy opt-in to opt-out. ([napari/napari#6352](https://github.com/napari/napari/pull/6352)) +- Full typing of a few more files in napari.utils.* ([napari/napari#6356](https://github.com/napari/napari/pull/6356)) +- Fix build wheel workflow file name ([napari/napari#6357](https://github.com/napari/napari/pull/6357)) +- Fix make release workflow ([napari/napari#6359](https://github.com/napari/napari/pull/6359)) +- Typing: Fully type 5 more files ([napari/napari#6361](https://github.com/napari/napari/pull/6361)) +- Update examples/clipboard_.py to fix FutureWarning ([napari/napari#6365](https://github.com/napari/napari/pull/6365)) +- Update `fsspec`, `imageio`, `magicgui`, `napari-console`, `npe2`, `pillow`, `tensorstore`, `xarray` ([napari/napari#6367](https://github.com/napari/napari/pull/6367)) +- fix `TransformChain.__getitem__` signature ([napari/napari#6369](https://github.com/napari/napari/pull/6369)) +- Fix permission for JasonEtco/create-an-issue@v2 action ([napari/napari#6370](https://github.com/napari/napari/pull/6370)) +- Automatic add `maintenance` label to upgrade dependecies workflow ([napari/napari#6371](https://github.com/napari/napari/pull/6371)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6373](https://github.com/napari/napari/pull/6373)) +- Ensure the conda bundle workflows have the appropriate permissions ([napari/napari#6379](https://github.com/napari/napari/pull/6379)) +- Skip redundant pre-commit hooks ([napari/napari#6389](https://github.com/napari/napari/pull/6389)) +- Update `babel`, `dask`, `pandas`, `pooch`, `pytest`, `qtpy`, `virtualenv` ([napari/napari#6398](https://github.com/napari/napari/pull/6398)) +- Fix environment variable name name in docs build ([napari/napari#6401](https://github.com/napari/napari/pull/6401)) +- ci(dependabot): bump actions/checkout from 3 to 4 ([napari/napari#6403](https://github.com/napari/napari/pull/6403)) +- Fix some weird behaviors when using delete and backspace keys as shortcuts (with or without modifiers) ([napari/napari#6406](https://github.com/napari/napari/pull/6406)) +- Use ruff to format strings to single quotes. ([napari/napari#6407](https://github.com/napari/napari/pull/6407)) +- Fix linter warnings in qt_main_window ([napari/napari#6409](https://github.com/napari/napari/pull/6409)) +- Unify circleci and build_docs workflows across repositories ([napari/napari#6417](https://github.com/napari/napari/pull/6417)) +- Fix `test_singlescreen_window_settings` to allow it to run locally on multiscreen configuration ([napari/napari#6422](https://github.com/napari/napari/pull/6422)) +- refactor `napari/_qt/_tests/test_async_slicing.py` to reduce fragility of test ([napari/napari#6423](https://github.com/napari/napari/pull/6423)) +- Simplify unused parameters of Quaternion functions. ([napari/napari#6424](https://github.com/napari/napari/pull/6424)) +- Still More typing V ([napari/napari#6427](https://github.com/napari/napari/pull/6427)) +- Synchronize `rgb` docstring of `ViewerModel.add_image` and `Image` constructor ([napari/napari#6428](https://github.com/napari/napari/pull/6428)) +- Fix milestone and label checker to be triggered by `milestoned`/`demilestoned` events ([napari/napari#6430](https://github.com/napari/napari/pull/6430)) +- Refactor Skipped test ([napari/napari#6431](https://github.com/napari/napari/pull/6431)) +- Update `dask`, `hypothesis`, `numpy`, `pandas`, `tensorstore`, `wrapt` ([napari/napari#6441](https://github.com/napari/napari/pull/6441)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6447](https://github.com/napari/napari/pull/6447)) +- add addtional pystack arguments ([napari/napari#6457](https://github.com/napari/napari/pull/6457)) +- Bump docker image version to most recent from 3.x.x line ([napari/napari#6458](https://github.com/napari/napari/pull/6458)) +- MAINT Bump magicgui version to v0.7.0 ([napari/napari#6462](https://github.com/napari/napari/pull/6462)) +- Update `certifi`, `hypothesis`, `imageio`, `jsonschema`, `matplotlib`, `numba`, `pillow`, `psygnal`, `pydantic`, `pygments`, `qtconsole`, `rich`, `scipy`, `tensorstore`, `xarray` ([napari/napari#6470](https://github.com/napari/napari/pull/6470)) +- Change default labels layer to uint8. ([napari/napari#6471](https://github.com/napari/napari/pull/6471)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6474](https://github.com/napari/napari/pull/6474)) +- Update `app-model`, `babel`, `coverage`, `dask`, `fsspec`, `hypothesis`, `imageio`, `ipython`, `lxml`, `magicgui`, `pandas`, `pint`, `psutil`, `pydantic`, `pyqt6`, `pytest-qt`, `tensorstore`, `tifffile`, `virtualenv`, `xarray` ([napari/napari#6478](https://github.com/napari/napari/pull/6478)) +- [Maint, CI] Update circleci.yml for artifact location to fix redirector ([napari/napari#6480](https://github.com/napari/napari/pull/6480)) +- Upload test artifacts on failure ([napari/napari#6486](https://github.com/napari/napari/pull/6486)) +- Add testing_extra and optional dependencies when creating constraints ([napari/napari#6487](https://github.com/napari/napari/pull/6487)) +- Add size and ndim to LayerDataProtocol ([napari/napari#6494](https://github.com/napari/napari/pull/6494)) +- Fix scheduled benchmarks to test both last release and main ([napari/napari#6496](https://github.com/napari/napari/pull/6496)) +- Type napari.layers.image helper sub-modules ([napari/napari#6499](https://github.com/napari/napari/pull/6499)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6505](https://github.com/napari/napari/pull/6505)) +- Add import lint back to CI ([napari/napari#6506](https://github.com/napari/napari/pull/6506)) +- Finish typing layers.base helper files ([napari/napari#6508](https://github.com/napari/napari/pull/6508)) +- Add lots of typing to layers.base ([napari/napari#6509](https://github.com/napari/napari/pull/6509)) +- Add `_block_refresh()` to layers ([napari/napari#6525](https://github.com/napari/napari/pull/6525)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6528](https://github.com/napari/napari/pull/6528)) +- Add cache to Transform calculation ([napari/napari#6536](https://github.com/napari/napari/pull/6536)) +- Rescale image data if outside `float32` precision ([napari/napari#6537](https://github.com/napari/napari/pull/6537)) +- MNT: Use `partial` in samples menu to avoid leaking ([napari/napari#6538](https://github.com/napari/napari/pull/6538)) +- Type two sub-modules in napari.layers.utils ([napari/napari#6539](https://github.com/napari/napari/pull/6539)) +- Print a whole stack if throttler is not finished ([napari/napari#6549](https://github.com/napari/napari/pull/6549)) +- Minimal changes for mlx (and jax) compatibility for Image layers ([napari/napari#6553](https://github.com/napari/napari/pull/6553)) +- Improve repo configuration based on scientific python suggestions ([napari/napari#6554](https://github.com/napari/napari/pull/6554)) +- Bump mypy version and fix errors ([napari/napari#6557](https://github.com/napari/napari/pull/6557)) +- ci(dependabot): bump aganders3/headless-gui from 1 to 2 ([napari/napari#6563](https://github.com/napari/napari/pull/6563)) +- ci(dependabot): bump actions/labeler from 4 to 5 ([napari/napari#6565](https://github.com/napari/napari/pull/6565)) +- ci(dependabot): bump actions/setup-python from 4 to 5 ([napari/napari#6567](https://github.com/napari/napari/pull/6567)) +- Fix test in napari_builtins to remove import from conftest ([napari/napari#6568](https://github.com/napari/napari/pull/6568)) +- Update test to work with `app-model==0.2.4` ([napari/napari#6573](https://github.com/napari/napari/pull/6573)) +- Add some more typing to utils.misc ([napari/napari#6574](https://github.com/napari/napari/pull/6574)) +- Fix typing in utils.perf ([napari/napari#6575](https://github.com/napari/napari/pull/6575)) +- Add more typing to utils.events.containers ([napari/napari#6576](https://github.com/napari/napari/pull/6576)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6581](https://github.com/napari/napari/pull/6581)) +- Try fix hanging tests by move `self.stop()` on end of functions that update GUI ([napari/napari#6594](https://github.com/napari/napari/pull/6594)) +- Cache linear matrix decomposition in `Affine` class ([napari/napari#6635](https://github.com/napari/napari/pull/6635)) +- bump actions/download-artifact and actions/upload-artifact from 3 to 4 ([napari/napari#6638](https://github.com/napari/napari/pull/6638)) +- Fix labeler configuration after update to v5 ([napari/napari#6639](https://github.com/napari/napari/pull/6639)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6648](https://github.com/napari/napari/pull/6648)) +- Update `app-model`, `dask`, `hypothesis`, `ipython`, `lxml`, `matplotlib`, `npe2`, `numba`, `numpydoc`, `pandas`, `pillow`, `psygnal`, `pyside2`, `pyside6`, `scipy`, `superqt`, `xarray`, `zarr` ([napari/napari#6655](https://github.com/napari/napari/pull/6655)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6656](https://github.com/napari/napari/pull/6656)) +- Disallow incomplete defs in layers.image ([napari/napari#6659](https://github.com/napari/napari/pull/6659)) +- Check untyped defs in _shapes_models ([napari/napari#6660](https://github.com/napari/napari/pull/6660)) +- Typing improvements to vectors layer ([napari/napari#6661](https://github.com/napari/napari/pull/6661)) +- Exclude problematic surface texture example from tests and docs building ([napari/napari#6663](https://github.com/napari/napari/pull/6663)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6672](https://github.com/napari/napari/pull/6672)) +- Migrate from setup.cfg to pyproject.toml ([napari/napari#6673](https://github.com/napari/napari/pull/6673)) +- Raise exception on TransformChain.simplified when chain is empty ([napari/napari#6674](https://github.com/napari/napari/pull/6674)) +- Add human readable names for Points layer subvisual ([napari/napari#6675](https://github.com/napari/napari/pull/6675)) +- Refactor perf module for better readabiity ([napari/napari#6686](https://github.com/napari/napari/pull/6686)) +- Fix upload of benchmarks ([napari/napari#6697](https://github.com/napari/napari/pull/6697)) +- Bump minimum dask version ([napari/napari#6698](https://github.com/napari/napari/pull/6698)) +- ci(dependabot): bump peter-evans/create-pull-request from 5 to 6 ([napari/napari#6700](https://github.com/napari/napari/pull/6700)) +- ci(dependabot): bump codecov/codecov-action from 3 to 4 ([napari/napari#6701](https://github.com/napari/napari/pull/6701)) +- ci(dependabot): bump aganders3/headless-gui from 1 to 2 ([napari/napari#6702](https://github.com/napari/napari/pull/6702)) +- Disable pyside2 test on windows CI ([napari/napari#6711](https://github.com/napari/napari/pull/6711)) +- Fix `--pre` workflow: missing setup to enable `pyautogui` usage on Linux ([napari/napari#6713](https://github.com/napari/napari/pull/6713)) +- Typing improvements in layers.shapes ([napari/napari#6716](https://github.com/napari/napari/pull/6716)) +- Improve typing in layers.surface ([napari/napari#6717](https://github.com/napari/napari/pull/6717)) +- Create .Xauthority file in conftest.py rather than GHA workflows ([napari/napari#6719](https://github.com/napari/napari/pull/6719)) +- use cross group dependecy in pyproject.toml ([napari/napari#6720](https://github.com/napari/napari/pull/6720)) +- Exclude pyside 2 test on comprehensive workflow ([napari/napari#6721](https://github.com/napari/napari/pull/6721)) +- Move base class for Image and Labels to its own file ([napari/napari#6725](https://github.com/napari/napari/pull/6725)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6737](https://github.com/napari/napari/pull/6737)) +- Drop Python 3.8, add Python 3.12 testing ([napari/napari#6738](https://github.com/napari/napari/pull/6738)) +- Fix Remove lambdas when updating menus from context in `Window` ([napari/napari#6740](https://github.com/napari/napari/pull/6740)) +- Improve widget clean up in `test_widget_hide_destroy` ([napari/napari#6741](https://github.com/napari/napari/pull/6741)) +- Move providers from `_providers.py` to `_qproviders.py` ([napari/napari#6743](https://github.com/napari/napari/pull/6743)) +- [Maint] Exclude pyqt6 6.6.1 on macOS in pyproject.toml ([napari/napari#6748](https://github.com/napari/napari/pull/6748)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6756](https://github.com/napari/napari/pull/6756)) +- [Maint] Put testing dependencies in [dev] as napari[testing] ([napari/napari#6757](https://github.com/napari/napari/pull/6757)) +- bump tifffile dependency and remove deprecation-handling code ([napari/napari#6765](https://github.com/napari/napari/pull/6765)) +- Move Qt view menu actions inside Qt folder ([napari/napari#6767](https://github.com/napari/napari/pull/6767)) +- Improve typing in layers.points ([napari/napari#6770](https://github.com/napari/napari/pull/6770)) +- [Maint] Correct a few more setup.cfg to pyproject.toml ([napari/napari#6771](https://github.com/napari/napari/pull/6771)) +- [maint] drop unused experimental vendor humanize and cachetools ([napari/napari#6772](https://github.com/napari/napari/pull/6772)) +- Switch from black to ruff-format ([napari/napari#6775](https://github.com/napari/napari/pull/6775)) +- numpy version 2.0 compatibility ([napari/napari#6776](https://github.com/napari/napari/pull/6776)) +- Remove app-model CommandId enum in favor of plain strings ([napari/napari#6777](https://github.com/napari/napari/pull/6777)) +- Sort parameters in docstring and `__init__` of `Layer` ([napari/napari#6779](https://github.com/napari/napari/pull/6779)) +- Implement validation of docstrings and kwargs order ([napari/napari#6782](https://github.com/napari/napari/pull/6782)) +- Sort docstring and kwargs of Points layer ([napari/napari#6784](https://github.com/napari/napari/pull/6784)) +- Sort docstring and kwargs of Shapes layer ([napari/napari#6786](https://github.com/napari/napari/pull/6786)) +- Sort docstring and kwargs of Surface layer ([napari/napari#6787](https://github.com/napari/napari/pull/6787)) +- Sort docstring and kwargs of Tracks layer ([napari/napari#6788](https://github.com/napari/napari/pull/6788)) +- improve stack trace of autogenerated `ViewerModel.add_xxxx` methods ([napari/napari#6791](https://github.com/napari/napari/pull/6791)) +- Move _is_moving property from Layer to Shapes ([napari/napari#6795](https://github.com/napari/napari/pull/6795)) +- Fix `ImportError: lxml.html.clean module is now a separate project lxml_html_clean` over test suite (Ubuntu 20.04 and benchmarks) ([napari/napari#6799](https://github.com/napari/napari/pull/6799)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6800](https://github.com/napari/napari/pull/6800)) +- Add more typing to two napari.layers sub-modules ([napari/napari#6803](https://github.com/napari/napari/pull/6803)) +- [maint] Fix deploy_docs.yml for change in napari/docs workflow ([napari/napari#6809](https://github.com/napari/napari/pull/6809)) +- Sort docstring and kwargs of Vectors layer ([napari/napari#6810](https://github.com/napari/napari/pull/6810)) +- Fix some rst syntax in docstrings ([napari/napari#6812](https://github.com/napari/napari/pull/6812)) +- Speedup `napari.layers.utils._test.test_stack_utils.py` ([napari/napari#6813](https://github.com/napari/napari/pull/6813)) +- [Maint] Update CircleCI config.yml for changes in napari/docs Makefile ([napari/napari#6814](https://github.com/napari/napari/pull/6814)) +- Add possibility to test consistency of docstring content between base class and class ([napari/napari#6816](https://github.com/napari/napari/pull/6816)) +- Rename `axes_labels` to `axis_labels` in some internal variables and docstrings ([napari/napari#6817](https://github.com/napari/napari/pull/6817)) +- Add workflow for automatically remove `ready to merge` label ([napari/napari#6818](https://github.com/napari/napari/pull/6818)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6820](https://github.com/napari/napari/pull/6820)) +- Move `_mock_app` fixture to `_testsupport.py` and add it to `make_napari_viewer` ([napari/napari#6823](https://github.com/napari/napari/pull/6823)) +- add test for ScalarField docstring, fix pointed bugs ([napari/napari#6824](https://github.com/napari/napari/pull/6824)) +- Add write permission to `remove_ready_to_merge.yml` workflow ([napari/napari#6825](https://github.com/napari/napari/pull/6825)) +- Bump python from 3.9 to 3.12 in pre-release tests ([napari/napari#6826](https://github.com/napari/napari/pull/6826)) +- fix "Remove ready to merge label" ([napari/napari#6830](https://github.com/napari/napari/pull/6830)) +- Remove "ready to merge" label action part 3 ([napari/napari#6832](https://github.com/napari/napari/pull/6832)) +- ci(dependabot): bump the actions group with 2 updates ([napari/napari#6835](https://github.com/napari/napari/pull/6835)) +- DeprecationWarning in ensure_iterable and is_iterable, Closes #6256 ([napari/napari#6836](https://github.com/napari/napari/pull/6836)) +- Do not crash test on graphviz installation fail ([napari/napari#6837](https://github.com/napari/napari/pull/6837)) +- Update `hypothesis`, `pandas`, `pydantic` ([napari/napari#6838](https://github.com/napari/napari/pull/6838)) +- Allow to use "remove ready to merge lablel" and "edit PR description" callable from another repository ([napari/napari#6839](https://github.com/napari/napari/pull/6839)) +- Add a few ruff lint rules: ASYNC, EXE, FA and LOG ([napari/napari#6840](https://github.com/napari/napari/pull/6840)) +- Add extra field to store plugin display name ([napari/napari#6841](https://github.com/napari/napari/pull/6841)) +- Add pytest-style rules for ruff ([napari/napari#6842](https://github.com/napari/napari/pull/6842)) +- Enable ruff SLOT linting rule ([napari/napari#6843](https://github.com/napari/napari/pull/6843)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6844](https://github.com/napari/napari/pull/6844)) +- Define submenus with their actions, remove submenus.py file ([napari/napari#6848](https://github.com/napari/napari/pull/6848)) +- Add T20 ruff rule (print calls) ([napari/napari#6849](https://github.com/napari/napari/pull/6849)) +- Test dev examples ([napari/napari#6854](https://github.com/napari/napari/pull/6854)) +- Check prereleases testing with macOS + Python 3.12 + PyQt6 ([napari/napari#6858](https://github.com/napari/napari/pull/6858)) +- Update `dask`, `imageio`, `scikit-image`, `tifffile`, `virtualenv` ([napari/napari#6861](https://github.com/napari/napari/pull/6861)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6863](https://github.com/napari/napari/pull/6863)) +- Update `hypothesis`, `pytest`, `virtualenv`, bump mypy constraints and resolve pointed problems. ([napari/napari#6866](https://github.com/napari/napari/pull/6866)) +- Fix compile constraints by compile per operating system and using `uv` ([napari/napari#6873](https://github.com/napari/napari/pull/6873)) +- Fix benchmark reporting ([napari/napari#6877](https://github.com/napari/napari/pull/6877)) +- Move help actions under `_qt` and remove lambdas ([napari/napari#6883](https://github.com/napari/napari/pull/6883)) +- Fix citation cff and add worflow for future validation ([napari/napari#6888](https://github.com/napari/napari/pull/6888)) +- Update `app-model`, `babel`, `coverage`, `dask`, `fsspec`, `hypothesis`, `jsonschema`, `lxml`, `matplotlib`, `psygnal`, `pygments`, `pytest`, `qtconsole`, `superqt`, `tensorstore`, `tifffile`, `tqdm`, `virtualenv`, `xarray`, `zarr` ([napari/napari#6891](https://github.com/napari/napari/pull/6891)) +- Add longer description to pytest fail in `fail_obj_graph` ([napari/napari#6899](https://github.com/napari/napari/pull/6899)) +- Migrate Window menu to app-model ([napari/napari#6905](https://github.com/napari/napari/pull/6905)) +- [Maint] On PRs, dont run benchmarks unless initial tests pass ([napari/napari#6909](https://github.com/napari/napari/pull/6909)) +- Fix `PIP_CONSTRAINT` to not crash python installation on macos arm and python 3.10 ([napari/napari#6911](https://github.com/napari/napari/pull/6911)) +- Migrate Debug menu to app-model ([napari/napari#6915](https://github.com/napari/napari/pull/6915)) +- remove error reporter code ([napari/napari#6923](https://github.com/napari/napari/pull/6923)) +- MNT: Fix layerlist context creation ([napari/napari#6926](https://github.com/napari/napari/pull/6926)) +- Automatically remove run-benchmarks label once benchmarks are executed ([napari/napari#6929](https://github.com/napari/napari/pull/6929)) +- Use `superqt.utils.CodeSyntaxHighlight` instead of `napari._qt.code_syntax_highlight.Pylighter` ([napari/napari#6938](https://github.com/napari/napari/pull/6938)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6939](https://github.com/napari/napari/pull/6939)) +- Add a test for viewer.close_all. ([napari/napari#6942](https://github.com/napari/napari/pull/6942)) +- Add more file menu actions tests ([napari/napari#6943](https://github.com/napari/napari/pull/6943)) +- [Maint] Update docs constraints for new napari-sphinx-theme release ([napari/napari#6947](https://github.com/napari/napari/pull/6947)) +- ci(dependabot): bump docker/login-action from 3.1.0 to 3.2.0 in the actions group ([napari/napari#6951](https://github.com/napari/napari/pull/6951)) +- Update `certifi`, `dask`, `fsspec`, `hypothesis`, `ipython`, `magicgui`, `pint`, `pooch`, `pydantic`, `pytest`, `superqt` ([napari/napari#6953](https://github.com/napari/napari/pull/6953)) +- Add some tests for view menu actions ([napari/napari#6955](https://github.com/napari/napari/pull/6955)) +- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6956](https://github.com/napari/napari/pull/6956)) +- Add some tests for plugins menu actions ([napari/napari#6962](https://github.com/napari/napari/pull/6962)) +- Add some tests for help menu actions ([napari/napari#6963](https://github.com/napari/napari/pull/6963)) +- Add a test for window menu actions ([napari/napari#6972](https://github.com/napari/napari/pull/6972)) +- [maint] Update docker-singularity-publish.yml to run on PR ([napari/napari#6973](https://github.com/napari/napari/pull/6973)) +- More numpy 2.0 related fixes ([napari/napari#6974](https://github.com/napari/napari/pull/6974)) +- Add some tests for debug menu actions and fix validation to create the menu ([napari/napari#6975](https://github.com/napari/napari/pull/6975)) +- Remove redundant `NapariMenu` ([napari/napari#6977](https://github.com/napari/napari/pull/6977)) +- Update `rename_argument` to use `FutureWarning` instead of `DeprecationWarning` ([napari/napari#6980](https://github.com/napari/napari/pull/6980)) +- Add attributes to `DummyTimer` ([napari/napari#6982](https://github.com/napari/napari/pull/6982)) +- Update `test_create_func_renamed` test to use `FutureWarning` instead of `DeprecationWarning` ([napari/napari#6987](https://github.com/napari/napari/pull/6987)) +- restore numpy 2.0 constraints ([napari/napari#6994](https://github.com/napari/napari/pull/6994)) +- Update `dask`, `hypothesis`, `numba`, `pydantic`, `tensorstore`, `vispy`, `xarray` ([napari/napari#6995](https://github.com/napari/napari/pull/6995)) +- Make test log easier to read by removing `-v` from pytest call ([napari/napari#6996](https://github.com/napari/napari/pull/6996)) +- Add tests for viewer scale bar attributes (`colored` and `ticks`) ([napari/napari#7006](https://github.com/napari/napari/pull/7006)) +- Add tox-uv to test environment for speedup installation, fix codecov upload ([napari/napari#7013](https://github.com/napari/napari/pull/7013)) +- Update CircleCI config.yml to not overwrite requirements ([napari/docs#184](https://github.com/napari/docs/pull/184)) +- Update CI actions versions ([napari/docs#213](https://github.com/napari/docs/pull/213)) +- [Maintenance] Use permissions for labeler action (and set v4) ([napari/docs#247](https://github.com/napari/docs/pull/247)) +- [maintenance] Fix missing v in labeler action version ([napari/docs#248](https://github.com/napari/docs/pull/248)) +- Use docs constraints in circleci workflow ([napari/docs#251](https://github.com/napari/docs/pull/251)) +- Add missed pinning dependencies ([napari/docs#260](https://github.com/napari/docs/pull/260)) +- [Maintenance] Update deploy_docs.yml to use constraints ([napari/docs#263](https://github.com/napari/docs/pull/263)) +- [Maintenance] fix path to requirements.txt in deploy_docs workflow ([napari/docs#264](https://github.com/napari/docs/pull/264)) +- Delete vestigial docs/requirements.txt ([napari/docs#270](https://github.com/napari/docs/pull/270)) +- [Maint] use concurrency to cancel in-progress build_docs ([napari/docs#277](https://github.com/napari/docs/pull/277)) +- [Maintenance] Update CIrcleCI redirector circleci.yml to fix artifact path ([napari/docs#278](https://github.com/napari/docs/pull/278)) +- fix napari repo path to constraints ([napari/docs#290](https://github.com/napari/docs/pull/290)) +- Update headless-gui action in build (fix screenshots) ([napari/docs#294](https://github.com/napari/docs/pull/294)) +- Update .gitignore ([napari/docs#300](https://github.com/napari/docs/pull/300)) +- Set `NAPARI_CONFIG` to clean settings ([napari/docs#310](https://github.com/napari/docs/pull/310)) +- Unify docs workflows ([napari/docs#348](https://github.com/napari/docs/pull/348)) +- For this repo, link contributions to documentation contribution guide ([napari/docs#366](https://github.com/napari/docs/pull/366)) +- [Maint] fix the download and deploy part of workflow ([napari/docs#380](https://github.com/napari/docs/pull/380)) +- [Maint] fix build_and_deploy.yml paths ([napari/docs#384](https://github.com/napari/docs/pull/384)) +- fix build_and_deploy.yml take 2 ([napari/docs#385](https://github.com/napari/docs/pull/385)) +- [maint] fix app-model intersphinx link ([napari/docs#388](https://github.com/napari/docs/pull/388)) +- Fix make html-noplot command ([napari/docs#394](https://github.com/napari/docs/pull/394)) +- [Maint] use lxml[html_clean] in requirements.txt ([napari/docs#397](https://github.com/napari/docs/pull/397)) +- Add maintenance workflows from main repo (edit PR description/clean up ready to merge label) ([napari/docs#406](https://github.com/napari/docs/pull/406)) +- Bump napari sphinx theme version ([napari/docs#423](https://github.com/napari/docs/pull/423)) + + +## 43 authors added to this release (alphabetical) + +- [aeisenbarth](https://github.com/napari/napari/commits?author=aeisenbarth) - @aeisenbarth +- [Amirreza Aflakparast](https://github.com/napari/napari/commits?author=AmirAflak) - @AmirAflak +- [andrew sweet](https://github.com/napari/napari/commits?author=andy-sweet) - @andy-sweet +- [Ashley Anderson](https://github.com/napari/napari/commits?author=aganders3) - @aganders3 +- [Christopher Nauroth-KreรŸ](https://github.com/napari/napari/commits?author=Chris-N-K) - @Chris-N-K +- [Daniel Althviz Morรฉ](https://github.com/napari/napari/commits?author=dalthviz) - @dalthviz +- [Daniel Zhang](https://github.com/napari/napari/commits?author=DanGonite57) - @DanGonite57 +- [David Paleฤek](https://github.com/napari/napari/commits?author=palec87) - @palec87 +- [David Pinto](https://github.com/napari/napari/commits?author=MarchisLost) - @MarchisLost +- [David Stansby](https://github.com/napari/napari/commits?author=dstansby) - @dstansby +- [Dr. Andrew Annex](https://github.com/napari/napari/commits?author=AndrewAnnex) - @AndrewAnnex +- [Draga Doncila Pop](https://github.com/napari/napari/commits?author=DragaDoncila) - @DragaDoncila +- [Eric Perlman](https://github.com/napari/napari/commits?author=perlman) - @perlman +- [Genevieve Buckley](https://github.com/napari/napari/commits?author=GenevieveBuckley) - @GenevieveBuckley +- [Gonzalo Peรฑa-Castellanos](https://github.com/napari/napari/commits?author=goanpeca) - @goanpeca +- [Grzegorz Bokota](https://github.com/napari/napari/commits?author=Czaki) - @Czaki +- [jaime rodriguez-guerra](https://github.com/napari/napari/commits?author=jaimergp) - @jaimergp +- [James Ryan](https://github.com/napari/napari/commits?author=jamesyan-git) - @jamesyan-git +- [Jan Eglinger](https://github.com/napari/napari/commits?author=imagejan) - @imagejan +- [Johannes Soltwedel](https://github.com/napari/napari/commits?author=jo-mueller) - @jo-mueller +- [Jordรฃo Bragantini](https://github.com/napari/napari/commits?author=JoOkuma) - @JoOkuma +- [Juan Nunez-Iglesias](https://github.com/napari/napari/commits?author=jni) - @jni +- [Jules Vanaret](https://github.com/napari/napari/commits?author=jules-vanaret) - @jules-vanaret +- [Kabilar Gunalan](https://github.com/napari/napari/commits?author=kabilar) - @kabilar +- [Kim Pevey](https://github.com/napari/napari/commits?author=kcpevey) - @kcpevey +- [Kira Evans](https://github.com/napari/napari/commits?author=kne42) - @kne42 +- [Konstantin Sofiiuk](https://github.com/napari/napari/commits?author=ksofiyuk) - @ksofiyuk +- [kyle i. s. harrington](https://github.com/napari/napari/commits?author=kephale) - @kephale +- [Lorenzo Gaifas](https://github.com/napari/napari/commits?author=brisvag) - @brisvag +- [Lucy Liu](https://github.com/napari/napari/commits?author=lucyleeow) - @lucyleeow +- [Lukasz Migas](https://github.com/napari/napari/commits?author=lukasz-migas) - @lukasz-migas +- [M Bussonnier](https://github.com/napari/napari/commits?author=Carreau) - @Carreau +- [Markus Stabrin](https://github.com/napari/napari/commits?author=mstabrin) - @mstabrin +- [Martin Weigert](https://github.com/napari/napari/commits?author=maweigert) - @maweigert +- [Melissa Weber Mendonรงa](https://github.com/napari/napari/commits?author=melissawm) - @melissawm +- [nadalyn miller](https://github.com/napari/napari/commits?author=Nadalyn-CZI) - @Nadalyn-CZI +- [odinsbane](https://github.com/napari/napari/commits?author=odinsbane) - @odinsbane +- [pam wadhwa](https://github.com/napari/napari/commits?author=ppwadhwa) - @ppwadhwa +- [Peter Sobolewski](https://github.com/napari/napari/commits?author=psobolewskiPhD) - @psobolewskiPhD +- [Sam Cunliffe](https://github.com/napari/napari/commits?author=samcunliffe) - @samcunliffe +- [Stefan van der Walt](https://github.com/napari/napari/commits?author=stefanv) - @stefanv +- [Talley Lambert](https://github.com/napari/napari/commits?author=tlambert03) - @tlambert03 +- [Wouter-Michiel Vierdag](https://github.com/napari/napari/commits?author=melonora) - @melonora + + +## 41 reviewers added to this release (alphabetical) + +- [alister burt](https://github.com/napari/napari/commits?author=alisterburt) - @alisterburt +- [andrew sweet](https://github.com/napari/napari/commits?author=andy-sweet) - @andy-sweet +- [Ashley Anderson](https://github.com/napari/napari/commits?author=aganders3) - @aganders3 +- [Daniel Althviz Morรฉ](https://github.com/napari/napari/commits?author=dalthviz) - @dalthviz +- [David Paleฤek](https://github.com/napari/napari/commits?author=palec87) - @palec87 +- [David Stansby](https://github.com/napari/napari/commits?author=dstansby) - @dstansby +- [Dr. Andrew Annex](https://github.com/napari/napari/commits?author=AndrewAnnex) - @AndrewAnnex +- [Draga Doncila Pop](https://github.com/napari/napari/commits?author=DragaDoncila) - @DragaDoncila +- [Eric Perlman](https://github.com/napari/napari/commits?author=perlman) - @perlman +- [Ganes Pandey](https://github.com/napari/napari/commits?author=pganes) - @pganes +- [Genevieve Buckley](https://github.com/napari/napari/commits?author=GenevieveBuckley) - @GenevieveBuckley +- [Gonzalo Peรฑa-Castellanos](https://github.com/napari/napari/commits?author=goanpeca) - @goanpeca +- [Grzegorz Bokota](https://github.com/napari/napari/commits?author=Czaki) - @Czaki +- [jaime rodriguez-guerra](https://github.com/napari/napari/commits?author=jaimergp) - @jaimergp +- [James Ryan](https://github.com/napari/napari/commits?author=jamesyan-git) - @jamesyan-git +- [Johannes Soltwedel](https://github.com/napari/napari/commits?author=jo-mueller) - @jo-mueller +- [Jordรฃo Bragantini](https://github.com/napari/napari/commits?author=JoOkuma) - @JoOkuma +- [Juan Nunez-Iglesias](https://github.com/napari/napari/commits?author=jni) - @jni +- [Jules Vanaret](https://github.com/napari/napari/commits?author=jules-vanaret) - @jules-vanaret +- [Kabilar Gunalan](https://github.com/napari/napari/commits?author=kabilar) - @kabilar +- [Kandarp Khandwala](https://github.com/napari/napari/commits?author=kandarpksk) - @kandarpksk +- [Kevin Yamauchi](https://github.com/napari/napari/commits?author=kevinyamauchi) - @kevinyamauchi +- [Kim Pevey](https://github.com/napari/napari/commits?author=kcpevey) - @kcpevey +- [Kira Evans](https://github.com/napari/napari/commits?author=kne42) - @kne42 +- [Konstantin Sofiiuk](https://github.com/napari/napari/commits?author=ksofiyuk) - @ksofiyuk +- [kyle i. s. harrington](https://github.com/napari/napari/commits?author=kephale) - @kephale +- [Lorenzo Gaifas](https://github.com/napari/napari/commits?author=brisvag) - @brisvag +- [Lucy Liu](https://github.com/napari/napari/commits?author=lucyleeow) - @lucyleeow +- [M Bussonnier](https://github.com/napari/napari/commits?author=Carreau) - @Carreau +- [Markus Stabrin](https://github.com/napari/napari/commits?author=mstabrin) - @mstabrin +- [Martin Weigert](https://github.com/napari/napari/commits?author=maweigert) - @maweigert +- [Melissa Weber Mendonรงa](https://github.com/napari/napari/commits?author=melissawm) - @melissawm +- [Nathan Clack](https://github.com/napari/napari/commits?author=nclack) - @nclack +- [Nicholas Sofroniew](https://github.com/napari/napari/commits?author=sofroniewn) - @sofroniewn +- [odinsbane](https://github.com/napari/napari/commits?author=odinsbane) - @odinsbane +- [pam wadhwa](https://github.com/napari/napari/commits?author=ppwadhwa) - @ppwadhwa +- [Peter Sobolewski](https://github.com/napari/napari/commits?author=psobolewskiPhD) - @psobolewskiPhD +- [Stefan van der Walt](https://github.com/napari/napari/commits?author=stefanv) - @stefanv +- [Talley Lambert](https://github.com/napari/napari/commits?author=tlambert03) - @tlambert03 +- [Wouter-Michiel Vierdag](https://github.com/napari/napari/commits?author=melonora) - @melonora +- [Ziyang Liu](https://github.com/napari/napari/commits?author=liu-ziyang) - @liu-ziyang + + +## 18 docs authors added to this release (alphabetical) + +- [andrew sweet](https://github.com/napari/docs/commits?author=andy-sweet) - @andy-sweet +- [Ashley Anderson](https://github.com/napari/docs/commits?author=aganders3) - @aganders3 +- [Daniel Althviz Morรฉ](https://github.com/napari/docs/commits?author=dalthviz) - @dalthviz +- [David Stansby](https://github.com/napari/docs/commits?author=dstansby) - @dstansby +- [Draga Doncila Pop](https://github.com/napari/docs/commits?author=DragaDoncila) - @DragaDoncila +- [Grzegorz Bokota](https://github.com/napari/docs/commits?author=Czaki) - @Czaki +- [jaime rodriguez-guerra](https://github.com/napari/docs/commits?author=jaimergp) - @jaimergp +- [James Ryan](https://github.com/napari/docs/commits?author=jamesyan-git) - @jamesyan-git +- [Juan Nunez-Iglesias](https://github.com/napari/docs/commits?author=jni) - @jni +- [Kabilar Gunalan](https://github.com/napari/docs/commits?author=kabilar) - @kabilar +- [Lorenzo Gaifas](https://github.com/napari/docs/commits?author=brisvag) - @brisvag +- [Lucy Liu](https://github.com/napari/docs/commits?author=lucyleeow) - @lucyleeow +- [Melissa Weber Mendonรงa](https://github.com/napari/docs/commits?author=melissawm) - @melissawm +- [niklas netter](https://github.com/napari/docs/commits?author=gatoniel) - @gatoniel +- [Peter Sobolewski](https://github.com/napari/docs/commits?author=psobolewskiPhD) - @psobolewskiPhD +- [Sean Martin](https://github.com/napari/docs/commits?author=seankmartin) - @seankmartin +- [Vince](https://github.com/napari/docs/commits?author=vreuter) - @vreuter +- [Wouter-Michiel Vierdag](https://github.com/napari/docs/commits?author=melonora) - @melonora + + +## 19 docs reviewers added to this release (alphabetical) + +- [alister burt](https://github.com/napari/docs/commits?author=alisterburt) - @alisterburt +- [andrew sweet](https://github.com/napari/docs/commits?author=andy-sweet) - @andy-sweet +- [Ashley Anderson](https://github.com/napari/docs/commits?author=aganders3) - @aganders3 +- [Daniel Althviz Morรฉ](https://github.com/napari/docs/commits?author=dalthviz) - @dalthviz +- [Draga Doncila Pop](https://github.com/napari/docs/commits?author=DragaDoncila) - @DragaDoncila +- [Genevieve Buckley](https://github.com/napari/docs/commits?author=GenevieveBuckley) - @GenevieveBuckley +- [Grzegorz Bokota](https://github.com/napari/docs/commits?author=Czaki) - @Czaki +- [Juan Nunez-Iglesias](https://github.com/napari/docs/commits?author=jni) - @jni +- [Kevin Yamauchi](https://github.com/napari/docs/commits?author=kevinyamauchi) - @kevinyamauchi +- [kyle i. s. harrington](https://github.com/napari/docs/commits?author=kephale) - @kephale +- [Lorenzo Gaifas](https://github.com/napari/docs/commits?author=brisvag) - @brisvag +- [Lucy Liu](https://github.com/napari/docs/commits?author=lucyleeow) - @lucyleeow +- [Melissa Weber Mendonรงa](https://github.com/napari/docs/commits?author=melissawm) - @melissawm +- [nadalyn miller](https://github.com/napari/docs/commits?author=Nadalyn-CZI) - @Nadalyn-CZI +- [niklas netter](https://github.com/napari/docs/commits?author=gatoniel) - @gatoniel +- [Peter Sobolewski](https://github.com/napari/docs/commits?author=psobolewskiPhD) - @psobolewskiPhD +- [Sean Martin](https://github.com/napari/docs/commits?author=seankmartin) - @seankmartin +- [Vince](https://github.com/napari/docs/commits?author=vreuter) - @vreuter +- [Wouter-Michiel Vierdag](https://github.com/napari/docs/commits?author=melonora) - @melonora + +## New Contributors + +There are 11 new contributors for this release: + +- Amirreza Aflakparast [napari](https://github.com/napari/napari/commits?author=AmirAflak) - @AmirAflak +- Daniel Zhang [napari](https://github.com/napari/napari/commits?author=DanGonite57) - @DanGonite57 +- David Paleฤek [napari](https://github.com/napari/napari/commits?author=palec87) - @palec87 +- David Pinto [napari](https://github.com/napari/napari/commits?author=MarchisLost) - @MarchisLost +- Dr. Andrew Annex [napari](https://github.com/napari/napari/commits?author=AndrewAnnex) - @AndrewAnnex +- Johannes Soltwedel [napari](https://github.com/napari/napari/commits?author=jo-mueller) - @jo-mueller +- niklas netter [docs](https://github.com/napari/docs/commits?author=gatoniel) - @gatoniel +- odinsbane [napari](https://github.com/napari/napari/commits?author=odinsbane) - @odinsbane +- Sam Cunliffe [napari](https://github.com/napari/napari/commits?author=samcunliffe) - @samcunliffe +- Stefan van der Walt [napari](https://github.com/napari/napari/commits?author=stefanv) - @stefanv +- Vince [docs](https://github.com/napari/docs/commits?author=vreuter) - @vreuter From f518161df6f8293d8786c41c8f3e16a16bb5cf2f Mon Sep 17 00:00:00 2001 From: Juan Nunez-Iglesias Date: Tue, 25 Jun 2024 10:37:55 +1000 Subject: [PATCH 2/5] Add toc.yml entry for release notes --- docs/_toc.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/docs/_toc.yml b/docs/_toc.yml index 75e3da677..e67debcf2 100644 --- a/docs/_toc.yml +++ b/docs/_toc.yml @@ -181,6 +181,7 @@ subtrees: - file: release/index subtrees: - entries: + - file: release/release_0_5_0 - file: release/release_0_4_19 - file: release/release_0_4_18 - file: release/release_0_4_17 From cd43bdfd39ccfee644e3e438144731b9a5094625 Mon Sep 17 00:00:00 2001 From: Juan Nunez-Iglesias Date: Wed, 26 Jun 2024 22:35:30 +1000 Subject: [PATCH 3/5] Highlight two more PRs --- docs/release/release_0_5_0.md | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/docs/release/release_0_5_0.md b/docs/release/release_0_5_0.md index a0752836a..fd67598a1 100644 --- a/docs/release/release_0_5_0.md +++ b/docs/release/release_0_5_0.md @@ -41,8 +41,13 @@ painting labels ([#5806](https://github.com/napari/napari/pull/5806)), pinch-to-zoom ([#5859](https://github.com/napari/napari/pull/5859)), better ways to show/hide individual layers when exploring your data ([#5574](https://github.com/napari/napari/pull/5574)) -([#5618](https://github.com/napari/napari/pull/5618)), and more: +([#5618](https://github.com/napari/napari/pull/5618)), creating a layer from +an image or URL in your clipboard +([#6532](https://github.com/napari/napari/pull/6532)), copy/pasting spatial +metadata (scale, translate, etc) between layers +([#6864](https://github.com/napari/napari/pull/6864)) and more: Over 20 new features in all and over 100 bug fixes and improvements! + Please see below for the full list of changes since 0.4.19. ## New Features From 7339babf602e0e99c48ca5e9089100c75ef268e6 Mon Sep 17 00:00:00 2001 From: Juan Nunez-Iglesias Date: Wed, 26 Jun 2024 22:35:44 +1000 Subject: [PATCH 4/5] Rename export figure PR --- docs/release/release_0_5_0.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/release/release_0_5_0.md b/docs/release/release_0_5_0.md index fd67598a1..e1c9d84b4 100644 --- a/docs/release/release_0_5_0.md +++ b/docs/release/release_0_5_0.md @@ -74,7 +74,7 @@ Please see below for the full list of changes since 0.4.19. - implement copying spatial information via clipboard ([napari/napari#6864](https://github.com/napari/napari/pull/6864)) - Add `axis_labels` and `units` to layers and transforms ([napari/napari#6979](https://github.com/napari/napari/pull/6979)) - Alpha implementation of NAP-6 ([napari/napari#7011](https://github.com/napari/napari/pull/7011)) -- Screenshot without margins ([napari/napari#6730](https://github.com/napari/napari/pull/6730)) +- Better export of figure-quality renderings from the canvas ([napari/napari#6730](https://github.com/napari/napari/pull/6730)) ## Improvements From bfc63f02c769a0e810505e2d23c0ebdc1e2f681c Mon Sep 17 00:00:00 2001 From: Juan Nunez-Iglesias Date: Wed, 26 Jun 2024 22:38:24 +1000 Subject: [PATCH 5/5] shorten PR number links --- docs/release/release_0_5_0.md | 1370 ++++++++++++++++----------------- 1 file changed, 685 insertions(+), 685 deletions(-) diff --git a/docs/release/release_0_5_0.md b/docs/release/release_0_5_0.md index e1c9d84b4..45fcdd64a 100644 --- a/docs/release/release_0_5_0.md +++ b/docs/release/release_0_5_0.md @@ -52,715 +52,715 @@ Please see below for the full list of changes since 0.4.19. ## New Features -- Add layer slicer base class for async slicing ([napari/napari#5170](https://github.com/napari/napari/pull/5170)) -- Feature: add layer contextual menu to hide not-selected layers ([napari/napari#5574](https://github.com/napari/napari/pull/5574)) -- Feature: alt-click visibility eye to toggle show just that layer (hide others) ([napari/napari#5618](https://github.com/napari/napari/pull/5618)) -- Feature: Add action to set current label to background (with keybinding) ([napari/napari#5672](https://github.com/napari/napari/pull/5672)) -- Use Dims margin in layer slicing code ([napari/napari#5697](https://github.com/napari/napari/pull/5697)) -- Changing brush size with mouse movement while holding specified modifiers ([napari/napari#5753](https://github.com/napari/napari/pull/5753)) -- Feature: polygon drawing in the Labels layer ([napari/napari#5806](https://github.com/napari/napari/pull/5806)) -- Replace old async loading with new approach ([napari/napari#5816](https://github.com/napari/napari/pull/5816)) -- Enable pinch-to-zoom with vispy 0.13+ ([napari/napari#5859](https://github.com/napari/napari/pull/5859)) -- Keep shading light for Surface fixed relative to camera ([napari/napari#5893](https://github.com/napari/napari/pull/5893)) -- Use Request/Response pattern for Vectors layer ([napari/napari#5918](https://github.com/napari/napari/pull/5918)) -- Lock dimensions / axes while rolling ([napari/napari#5986](https://github.com/napari/napari/pull/5986)) -- Added support for features in surface layers ([napari/napari#6515](https://github.com/napari/napari/pull/6515)) -- Add creating image from clipboard ([napari/napari#6532](https://github.com/napari/napari/pull/6532)) -- Add viewer keybinds to select & show only next/prev layer and to toggle visibility of unselected ([napari/napari#6590](https://github.com/napari/napari/pull/6590)) -- Show `About napari` action on macOS application menu ([napari/napari#6666](https://github.com/napari/napari/pull/6666)) -- Add points/shapes highlight color setting to Appereance settings and preference page ([napari/napari#6689](https://github.com/napari/napari/pull/6689)) -- Include features index as key in FormatStringEncoding ([napari/napari#6703](https://github.com/napari/napari/pull/6703)) -- Reset all dims to be rollable ([napari/napari#6797](https://github.com/napari/napari/pull/6797)) -- implement copying spatial information via clipboard ([napari/napari#6864](https://github.com/napari/napari/pull/6864)) -- Add `axis_labels` and `units` to layers and transforms ([napari/napari#6979](https://github.com/napari/napari/pull/6979)) -- Alpha implementation of NAP-6 ([napari/napari#7011](https://github.com/napari/napari/pull/7011)) -- Better export of figure-quality renderings from the canvas ([napari/napari#6730](https://github.com/napari/napari/pull/6730)) +- Add layer slicer base class for async slicing ([#5170](https://github.com/napari/napari/pull/5170)) +- Feature: add layer contextual menu to hide not-selected layers ([#5574](https://github.com/napari/napari/pull/5574)) +- Feature: alt-click visibility eye to toggle show just that layer (hide others) ([#5618](https://github.com/napari/napari/pull/5618)) +- Feature: Add action to set current label to background (with keybinding) ([#5672](https://github.com/napari/napari/pull/5672)) +- Use Dims margin in layer slicing code ([#5697](https://github.com/napari/napari/pull/5697)) +- Changing brush size with mouse movement while holding specified modifiers ([#5753](https://github.com/napari/napari/pull/5753)) +- Feature: polygon drawing in the Labels layer ([#5806](https://github.com/napari/napari/pull/5806)) +- Replace old async loading with new approach ([#5816](https://github.com/napari/napari/pull/5816)) +- Enable pinch-to-zoom with vispy 0.13+ ([#5859](https://github.com/napari/napari/pull/5859)) +- Keep shading light for Surface fixed relative to camera ([#5893](https://github.com/napari/napari/pull/5893)) +- Use Request/Response pattern for Vectors layer ([#5918](https://github.com/napari/napari/pull/5918)) +- Lock dimensions / axes while rolling ([#5986](https://github.com/napari/napari/pull/5986)) +- Added support for features in surface layers ([#6515](https://github.com/napari/napari/pull/6515)) +- Add creating image from clipboard ([#6532](https://github.com/napari/napari/pull/6532)) +- Add viewer keybinds to select & show only next/prev layer and to toggle visibility of unselected ([#6590](https://github.com/napari/napari/pull/6590)) +- Show `About napari` action on macOS application menu ([#6666](https://github.com/napari/napari/pull/6666)) +- Add points/shapes highlight color setting to Appereance settings and preference page ([#6689](https://github.com/napari/napari/pull/6689)) +- Include features index as key in FormatStringEncoding ([#6703](https://github.com/napari/napari/pull/6703)) +- Reset all dims to be rollable ([#6797](https://github.com/napari/napari/pull/6797)) +- implement copying spatial information via clipboard ([#6864](https://github.com/napari/napari/pull/6864)) +- Add `axis_labels` and `units` to layers and transforms ([#6979](https://github.com/napari/napari/pull/6979)) +- Alpha implementation of NAP-6 ([#7011](https://github.com/napari/napari/pull/7011)) +- Better export of figure-quality renderings from the canvas ([#6730](https://github.com/napari/napari/pull/6730)) ## Improvements -- use app-model for file menu ([napari/napari#4865](https://github.com/napari/napari/pull/4865)) -- Show platform specific shortcut while editing. ([napari/napari#5064](https://github.com/napari/napari/pull/5064)) -- Add secondary keybindings to restore mnemonic (non-numeric) shortcuts in layers ([napari/napari#5155](https://github.com/napari/napari/pull/5155)) -- Add loading layer UI indicator ([napari/napari#5342](https://github.com/napari/napari/pull/5342)) -- Clean up layer slicer before integration with viewer ([napari/napari#5435](https://github.com/napari/napari/pull/5435)) -- Thick Slices (Dims as nD-box instead of nD-point) ([napari/napari#5522](https://github.com/napari/napari/pull/5522)) -- Add `font-size` to theme ([napari/napari#5607](https://github.com/napari/napari/pull/5607)) -- Feature: Background color swapping for the Label layer (extends #5672) ([napari/napari#5744](https://github.com/napari/napari/pull/5744)) -- Improve error message when user passes nonexistent plugin ([napari/napari#6016](https://github.com/napari/napari/pull/6016)) -- Reduce comparison in evented model ([napari/napari#6075](https://github.com/napari/napari/pull/6075)) -- Expose theme `font_size` as an `Appearance` setting ([napari/napari#6113](https://github.com/napari/napari/pull/6113)) -- ENH Adds `LayerList` context ([napari/napari#6165](https://github.com/napari/napari/pull/6165)) -- Add layer name to QFileDialog when only one layer is selected for saving. ([napari/napari#6360](https://github.com/napari/napari/pull/6360)) -- Use blobs instead of random integers ([napari/napari#6527](https://github.com/napari/napari/pull/6527)) -- Show notification when using shortcut to change current selected label to largest used label plus one ([napari/napari#6546](https://github.com/napari/napari/pull/6546)) -- Keep vertex selection after shape drawing finishes ([napari/napari#6640](https://github.com/napari/napari/pull/6640)) -- Add GL_MAX_3D_TEXTURE_SIZE to `napari --info` ([napari/napari#6645](https://github.com/napari/napari/pull/6645)) -- [ENH] use imageio.v3 for builtins io imread ([napari/napari#6677](https://github.com/napari/napari/pull/6677)) -- Make new labels dtype configurable ([napari/napari#6695](https://github.com/napari/napari/pull/6695)) -- Add `Optional` section to napari info with numba and triangle ([napari/napari#6710](https://github.com/napari/napari/pull/6710)) -- [ENH] Add `repeatable` kwarg to register_viewer_action and use it for slider left/right keybind ([napari/napari#6769](https://github.com/napari/napari/pull/6769)) -- "Shapes to Labels", "(float)Image to Labels": Don't pop layer being converted, append new one ([napari/napari#6859](https://github.com/napari/napari/pull/6859)) -- [enh] Transform mode: shift to snap layer rotation to 45 deg ([napari/napari#6948](https://github.com/napari/napari/pull/6948)) -- [UX/UI] flip the default for the reader plugin dialog to *not* have the Remember box checked ([napari/napari#7016](https://github.com/napari/napari/pull/7016)) -- Extend "No Qt bindings found" error message with details about conda ([napari/napari#6095](https://github.com/napari/napari/pull/6095)) -- Add convenience input validation for Labels colormaps ([napari/napari#7025](https://github.com/napari/napari/pull/7025)) -- [UI/UX] Updated polygon button icon for Shapes & Labels regular polygon tool ([napari/napari#7019](https://github.com/napari/napari/pull/7019)) +- use app-model for file menu ([#4865](https://github.com/napari/napari/pull/4865)) +- Show platform specific shortcut while editing. ([#5064](https://github.com/napari/napari/pull/5064)) +- Add secondary keybindings to restore mnemonic (non-numeric) shortcuts in layers ([#5155](https://github.com/napari/napari/pull/5155)) +- Add loading layer UI indicator ([#5342](https://github.com/napari/napari/pull/5342)) +- Clean up layer slicer before integration with viewer ([#5435](https://github.com/napari/napari/pull/5435)) +- Thick Slices (Dims as nD-box instead of nD-point) ([#5522](https://github.com/napari/napari/pull/5522)) +- Add `font-size` to theme ([#5607](https://github.com/napari/napari/pull/5607)) +- Feature: Background color swapping for the Label layer (extends #5672) ([#5744](https://github.com/napari/napari/pull/5744)) +- Improve error message when user passes nonexistent plugin ([#6016](https://github.com/napari/napari/pull/6016)) +- Reduce comparison in evented model ([#6075](https://github.com/napari/napari/pull/6075)) +- Expose theme `font_size` as an `Appearance` setting ([#6113](https://github.com/napari/napari/pull/6113)) +- ENH Adds `LayerList` context ([#6165](https://github.com/napari/napari/pull/6165)) +- Add layer name to QFileDialog when only one layer is selected for saving. ([#6360](https://github.com/napari/napari/pull/6360)) +- Use blobs instead of random integers ([#6527](https://github.com/napari/napari/pull/6527)) +- Show notification when using shortcut to change current selected label to largest used label plus one ([#6546](https://github.com/napari/napari/pull/6546)) +- Keep vertex selection after shape drawing finishes ([#6640](https://github.com/napari/napari/pull/6640)) +- Add GL_MAX_3D_TEXTURE_SIZE to `napari --info` ([#6645](https://github.com/napari/napari/pull/6645)) +- [ENH] use imageio.v3 for builtins io imread ([#6677](https://github.com/napari/napari/pull/6677)) +- Make new labels dtype configurable ([#6695](https://github.com/napari/napari/pull/6695)) +- Add `Optional` section to napari info with numba and triangle ([#6710](https://github.com/napari/napari/pull/6710)) +- [ENH] Add `repeatable` kwarg to register_viewer_action and use it for slider left/right keybind ([#6769](https://github.com/napari/napari/pull/6769)) +- "Shapes to Labels", "(float)Image to Labels": Don't pop layer being converted, append new one ([#6859](https://github.com/napari/napari/pull/6859)) +- [enh] Transform mode: shift to snap layer rotation to 45 deg ([#6948](https://github.com/napari/napari/pull/6948)) +- [UX/UI] flip the default for the reader plugin dialog to *not* have the Remember box checked ([#7016](https://github.com/napari/napari/pull/7016)) +- Extend "No Qt bindings found" error message with details about conda ([#6095](https://github.com/napari/napari/pull/6095)) +- Add convenience input validation for Labels colormaps ([#7025](https://github.com/napari/napari/pull/7025)) +- [UI/UX] Updated polygon button icon for Shapes & Labels regular polygon tool ([#7019](https://github.com/napari/napari/pull/7019)) ## Performance -- Do not copy label data when not necessary ([napari/napari#5542](https://github.com/napari/napari/pull/5542)) -- Throttle mouse move event to fix high-polling-rate input ([napari/napari#5710](https://github.com/napari/napari/pull/5710)) -- Speed up symbols validation in points layers ([napari/napari#6277](https://github.com/napari/napari/pull/6277)) -- Making Tracks layers creation and update faster ([napari/napari#6671](https://github.com/napari/napari/pull/6671)) -- Making Points layer creation and update faster ([napari/napari#6727](https://github.com/napari/napari/pull/6727)) -- Remove unnecessary early call to np.asarray before thick slicing ([napari/napari#6735](https://github.com/napari/napari/pull/6735)) -- perf: remove extra highlight calls ([napari/napari#6893](https://github.com/napari/napari/pull/6893)) +- Do not copy label data when not necessary ([#5542](https://github.com/napari/napari/pull/5542)) +- Throttle mouse move event to fix high-polling-rate input ([#5710](https://github.com/napari/napari/pull/5710)) +- Speed up symbols validation in points layers ([#6277](https://github.com/napari/napari/pull/6277)) +- Making Tracks layers creation and update faster ([#6671](https://github.com/napari/napari/pull/6671)) +- Making Points layer creation and update faster ([#6727](https://github.com/napari/napari/pull/6727)) +- Remove unnecessary early call to np.asarray before thick slicing ([#6735](https://github.com/napari/napari/pull/6735)) +- perf: remove extra highlight calls ([#6893](https://github.com/napari/napari/pull/6893)) ## Bug Fixes -- Quick silo dev version settings in a dev sub-directory ([napari/napari#5322](https://github.com/napari/napari/pull/5322)) -- Fix conda avaliability check ([napari/napari#5496](https://github.com/napari/napari/pull/5496)) -- Bugfix: PR build of docs doesn't use proper napari versioning for substitutions ([napari/napari#5557](https://github.com/napari/napari/pull/5557)) -- fix various keybinding/shortcut bugs ([napari/napari#5604](https://github.com/napari/napari/pull/5604)) -- Bugfix (macOS): Remove PYTHONEXECUTABLE from `env` for conda installs ([napari/napari#5622](https://github.com/napari/napari/pull/5622)) -- Fix waiting for multiple signals in threading progress bar test ([napari/napari#5637](https://github.com/napari/napari/pull/5637)) -- Update the sliders `axis_label` widget to be a `QElidingLineEdit` instance ([napari/napari#5665](https://github.com/napari/napari/pull/5665)) -- Fix usage of closed interval dims and unify extents calculations ([napari/napari#5751](https://github.com/napari/napari/pull/5751)) -- Add aditional guard at the end of `test_worker_may_exceed_total` ([napari/napari#5781](https://github.com/napari/napari/pull/5781)) -- Return full colormap dict in get_state ([napari/napari#5782](https://github.com/napari/napari/pull/5782)) -- Add test coverage for async slicing of points and fix rounding bug ([napari/napari#5783](https://github.com/napari/napari/pull/5783)) -- Add pydantic<2 constrains to plugin install ([napari/napari#5785](https://github.com/napari/napari/pull/5785)) -- Readd exception to event proxy ([napari/napari#5797](https://github.com/napari/napari/pull/5797)) -- Bugfix: do not allow drawing while adjusting the brush size with the mouse ([napari/napari#5842](https://github.com/napari/napari/pull/5842)) -- Amend `pydantic` constraints in the plugin manager ([napari/napari#5851](https://github.com/napari/napari/pull/5851)) -- Bugfix: Ensure bgcolor is set in __init__ of VispyCanvas ([napari/napari#5970](https://github.com/napari/napari/pull/5970)) -- Make sure `open_sample` respects `reader_plugin` for sample URIs ([napari/napari#5971](https://github.com/napari/napari/pull/5971)) -- Async refresh when experimental setting is on ([napari/napari#6008](https://github.com/napari/napari/pull/6008)) -- Add validation logic for `Dims.last_used` to prevent slider selection errors when rolling dims ([napari/napari#6024](https://github.com/napari/napari/pull/6024)) -- Update layer's loaded state before vispy and thumbnail ([napari/napari#6026](https://github.com/napari/napari/pull/6026)) -- Fix string list JSON formatting ([napari/napari#6033](https://github.com/napari/napari/pull/6033)) -- Remove 3D multiscale warning ([napari/napari#6070](https://github.com/napari/napari/pull/6070)) -- A few small improvements to async slicing ([napari/napari#6080](https://github.com/napari/napari/pull/6080)) -- Add toggle status view menu items ([napari/napari#6137](https://github.com/napari/napari/pull/6137)) -- Fix PR html stripping workflow ([napari/napari#6139](https://github.com/napari/napari/pull/6139)) -- Add test on top of #6142 ([napari/napari#6167](https://github.com/napari/napari/pull/6167)) -- Bugfix: ensure thumbnail represents canvas when multiscale ([napari/napari#6200](https://github.com/napari/napari/pull/6200)) -- Fix (N>4)D shapes. ([napari/napari#6210](https://github.com/napari/napari/pull/6210)) -- Fix typing checks in PRs ([napari/napari#6230](https://github.com/napari/napari/pull/6230)) -- convert Color to string ([napari/napari#6243](https://github.com/napari/napari/pull/6243)) -- Fix link to artifacts in update dependecies comment ([napari/napari#6270](https://github.com/napari/napari/pull/6270)) -- Fix setting shortcuts with modifier keys and only one modifier key as a shortcut on Windows/Linux ([napari/napari#6330](https://github.com/napari/napari/pull/6330)) -- Pass key event from Main window to our internal mechanism ([napari/napari#6419](https://github.com/napari/napari/pull/6419)) -- Restore old breakpointhook after console import in tests fixture ([napari/napari#6436](https://github.com/napari/napari/pull/6436)) -- FIX: Remove `None` default from `_remove_dock_widget` ([napari/napari#6481](https://github.com/napari/napari/pull/6481)) -- Fix crash on python -m napari ([napari/napari#6484](https://github.com/napari/napari/pull/6484)) -- Bugfix: ensure gamma and opacity are floats ([napari/napari#6498](https://github.com/napari/napari/pull/6498)) -- Restore quit shortcut ([napari/napari#6526](https://github.com/napari/napari/pull/6526)) -- Fix contrast limits for single layer numpy case. ([napari/napari#6535](https://github.com/napari/napari/pull/6535)) -- Fix check if plugin is available from conda ([napari/napari#6545](https://github.com/napari/napari/pull/6545)) -- Set default dtype for empty `_ImageSliceResponse` ([napari/napari#6552](https://github.com/napari/napari/pull/6552)) -- Ensure consistent layer tooltip ([napari/napari#6589](https://github.com/napari/napari/pull/6589)) -- Make Shift-Up/Down in layer list expand and contract selection ([napari/napari#6606](https://github.com/napari/napari/pull/6606)) -- Remove scaling of highlight width, fix showing shapes for uneven coordinates ([napari/napari#6629](https://github.com/napari/napari/pull/6629)) -- Fix decomposition function to properly work with more than 2x2 matrices ([napari/napari#6636](https://github.com/napari/napari/pull/6636)) -- Remove if that prevents from setting gamma in constructor ([napari/napari#6650](https://github.com/napari/napari/pull/6650)) -- [Bugfix] update selection ctx keys before showing LayerList context menu ([napari/napari#6664](https://github.com/napari/napari/pull/6664)) -- Fix offset in rendering of `TransformBox` of image/labels layers ([napari/napari#6679](https://github.com/napari/napari/pull/6679)) -- Exclude size and symbol pts attributes from linking, because they depend on number of points ([napari/napari#6687](https://github.com/napari/napari/pull/6687)) -- Fix shape layer infinite edge bug ([napari/napari#6706](https://github.com/napari/napari/pull/6706)) -- [Dockerfile] update pip before installing napari ([napari/napari#6728](https://github.com/napari/napari/pull/6728)) -- Fix npe1 samples menu building ([napari/napari#6739](https://github.com/napari/napari/pull/6739)) -- [Maint, CI] Fix upgrade_test_constraints.yml to use pyproject.toml ([napari/napari#6749](https://github.com/napari/napari/pull/6749)) -- Update description of `a`, `shift-a` points keybinds to reflect toggle ([napari/napari#6750](https://github.com/napari/napari/pull/6750)) -- [Dockerfile] add missing opengl and x11 packages to the base image ([napari/napari#6754](https://github.com/napari/napari/pull/6754)) -- Keep `qtpy` in headless tests and fix resulting failure ([napari/napari#6764](https://github.com/napari/napari/pull/6764)) -- Fix sync slicing of not yet visible layers ([napari/napari#6766](https://github.com/napari/napari/pull/6766)) -- Remove compression scheme when saving boolean arrays as tif ([napari/napari#6807](https://github.com/napari/napari/pull/6807)) -- Solving visual glitch when displaying tracks with missing timepoints ([napari/napari#6808](https://github.com/napari/napari/pull/6808)) -- Fix `napari.utils.misc.is_iterable` function ([napari/napari#6811](https://github.com/napari/napari/pull/6811)) -- Remove redundant `_view_actions.py` ([napari/napari#6821](https://github.com/napari/napari/pull/6821)) -- refresh when canvas_size_limits are changed ([napari/napari#6834](https://github.com/napari/napari/pull/6834)) -- Fix selection size when canvas limits are set for Points ([napari/napari#6853](https://github.com/napari/napari/pull/6853)) -- Ensure bounding_box lines stay up to date between 2D and 3D ([napari/napari#6855](https://github.com/napari/napari/pull/6855)) -- Fix zarr reading with unrelated files ([napari/napari#6857](https://github.com/napari/napari/pull/6857)) -- Two bug fixes concerning 4D surfaces, ie surfaces with (t, z, y, x) vertices ([napari/napari#6874](https://github.com/napari/napari/pull/6874)) -- [bugfix] Drop if guard on notification_manager to enable show_info from Jupyter ([napari/napari#6882](https://github.com/napari/napari/pull/6882)) -- [bugfix] Warn if float image data being saved to non-tiff ([napari/napari#6884](https://github.com/napari/napari/pull/6884)) -- Disable copying layer transform metadata when selecting multiple layers ([napari/napari#6887](https://github.com/napari/napari/pull/6887)) -- Fix use of scaling in vispy points ([napari/napari#6894](https://github.com/napari/napari/pull/6894)) -- Fix point highlight thickness ([napari/napari#6896](https://github.com/napari/napari/pull/6896)) -- Fix shapes mouse click and double click behavior on partial shapes ([napari/napari#6912](https://github.com/napari/napari/pull/6912)) -- Again fix translate of overlays (this time with tests) ([napari/napari#6927](https://github.com/napari/napari/pull/6927)) -- Add warning notification when connectivity errors occur in when opening the plugin manager ([napari/napari#6931](https://github.com/napari/napari/pull/6931)) -- Fix array data copy behavior for numpy 1 and 2 consistency ([napari/napari#6932](https://github.com/napari/napari/pull/6932)) -- [bugfix] Swap digit and `backspace` for Shapes & Points `delete_selected` keybinds ([napari/napari#6933](https://github.com/napari/napari/pull/6933)) -- Fix callback for `File -> Open Folder...` action ([napari/napari#6935](https://github.com/napari/napari/pull/6935)) -- fix `create_func` to respect `rename_argument` decorator ([napari/napari#6970](https://github.com/napari/napari/pull/6970)) -- Do not crash napari viewer if error happen on open file via cli ([napari/napari#6971](https://github.com/napari/napari/pull/6971)) -- Fix viewer scale bar color update ([napari/napari#6989](https://github.com/napari/napari/pull/6989)) -- Remove NumPy 2 pin, fix direct colormap with keys outside data dtype ([napari/napari#6998](https://github.com/napari/napari/pull/6998)) -- Fix switching from 2d to 3d with 2d points ([napari/napari#7004](https://github.com/napari/napari/pull/7004)) -- Fix importerror and message for lxml_html_clean ([napari/napari#7017](https://github.com/napari/napari/pull/7017)) +- Quick silo dev version settings in a dev sub-directory ([#5322](https://github.com/napari/napari/pull/5322)) +- Fix conda avaliability check ([#5496](https://github.com/napari/napari/pull/5496)) +- Bugfix: PR build of docs doesn't use proper napari versioning for substitutions ([#5557](https://github.com/napari/napari/pull/5557)) +- fix various keybinding/shortcut bugs ([#5604](https://github.com/napari/napari/pull/5604)) +- Bugfix (macOS): Remove PYTHONEXECUTABLE from `env` for conda installs ([#5622](https://github.com/napari/napari/pull/5622)) +- Fix waiting for multiple signals in threading progress bar test ([#5637](https://github.com/napari/napari/pull/5637)) +- Update the sliders `axis_label` widget to be a `QElidingLineEdit` instance ([#5665](https://github.com/napari/napari/pull/5665)) +- Fix usage of closed interval dims and unify extents calculations ([#5751](https://github.com/napari/napari/pull/5751)) +- Add aditional guard at the end of `test_worker_may_exceed_total` ([#5781](https://github.com/napari/napari/pull/5781)) +- Return full colormap dict in get_state ([#5782](https://github.com/napari/napari/pull/5782)) +- Add test coverage for async slicing of points and fix rounding bug ([#5783](https://github.com/napari/napari/pull/5783)) +- Add pydantic<2 constrains to plugin install ([#5785](https://github.com/napari/napari/pull/5785)) +- Readd exception to event proxy ([#5797](https://github.com/napari/napari/pull/5797)) +- Bugfix: do not allow drawing while adjusting the brush size with the mouse ([#5842](https://github.com/napari/napari/pull/5842)) +- Amend `pydantic` constraints in the plugin manager ([#5851](https://github.com/napari/napari/pull/5851)) +- Bugfix: Ensure bgcolor is set in __init__ of VispyCanvas ([#5970](https://github.com/napari/napari/pull/5970)) +- Make sure `open_sample` respects `reader_plugin` for sample URIs ([#5971](https://github.com/napari/napari/pull/5971)) +- Async refresh when experimental setting is on ([#6008](https://github.com/napari/napari/pull/6008)) +- Add validation logic for `Dims.last_used` to prevent slider selection errors when rolling dims ([#6024](https://github.com/napari/napari/pull/6024)) +- Update layer's loaded state before vispy and thumbnail ([#6026](https://github.com/napari/napari/pull/6026)) +- Fix string list JSON formatting ([#6033](https://github.com/napari/napari/pull/6033)) +- Remove 3D multiscale warning ([#6070](https://github.com/napari/napari/pull/6070)) +- A few small improvements to async slicing ([#6080](https://github.com/napari/napari/pull/6080)) +- Add toggle status view menu items ([#6137](https://github.com/napari/napari/pull/6137)) +- Fix PR html stripping workflow ([#6139](https://github.com/napari/napari/pull/6139)) +- Add test on top of #6142 ([#6167](https://github.com/napari/napari/pull/6167)) +- Bugfix: ensure thumbnail represents canvas when multiscale ([#6200](https://github.com/napari/napari/pull/6200)) +- Fix (N>4)D shapes. ([#6210](https://github.com/napari/napari/pull/6210)) +- Fix typing checks in PRs ([#6230](https://github.com/napari/napari/pull/6230)) +- convert Color to string ([#6243](https://github.com/napari/napari/pull/6243)) +- Fix link to artifacts in update dependecies comment ([#6270](https://github.com/napari/napari/pull/6270)) +- Fix setting shortcuts with modifier keys and only one modifier key as a shortcut on Windows/Linux ([#6330](https://github.com/napari/napari/pull/6330)) +- Pass key event from Main window to our internal mechanism ([#6419](https://github.com/napari/napari/pull/6419)) +- Restore old breakpointhook after console import in tests fixture ([#6436](https://github.com/napari/napari/pull/6436)) +- FIX: Remove `None` default from `_remove_dock_widget` ([#6481](https://github.com/napari/napari/pull/6481)) +- Fix crash on python -m napari ([#6484](https://github.com/napari/napari/pull/6484)) +- Bugfix: ensure gamma and opacity are floats ([#6498](https://github.com/napari/napari/pull/6498)) +- Restore quit shortcut ([#6526](https://github.com/napari/napari/pull/6526)) +- Fix contrast limits for single layer numpy case. ([#6535](https://github.com/napari/napari/pull/6535)) +- Fix check if plugin is available from conda ([#6545](https://github.com/napari/napari/pull/6545)) +- Set default dtype for empty `_ImageSliceResponse` ([#6552](https://github.com/napari/napari/pull/6552)) +- Ensure consistent layer tooltip ([#6589](https://github.com/napari/napari/pull/6589)) +- Make Shift-Up/Down in layer list expand and contract selection ([#6606](https://github.com/napari/napari/pull/6606)) +- Remove scaling of highlight width, fix showing shapes for uneven coordinates ([#6629](https://github.com/napari/napari/pull/6629)) +- Fix decomposition function to properly work with more than 2x2 matrices ([#6636](https://github.com/napari/napari/pull/6636)) +- Remove if that prevents from setting gamma in constructor ([#6650](https://github.com/napari/napari/pull/6650)) +- [Bugfix] update selection ctx keys before showing LayerList context menu ([#6664](https://github.com/napari/napari/pull/6664)) +- Fix offset in rendering of `TransformBox` of image/labels layers ([#6679](https://github.com/napari/napari/pull/6679)) +- Exclude size and symbol pts attributes from linking, because they depend on number of points ([#6687](https://github.com/napari/napari/pull/6687)) +- Fix shape layer infinite edge bug ([#6706](https://github.com/napari/napari/pull/6706)) +- [Dockerfile] update pip before installing napari ([#6728](https://github.com/napari/napari/pull/6728)) +- Fix npe1 samples menu building ([#6739](https://github.com/napari/napari/pull/6739)) +- [Maint, CI] Fix upgrade_test_constraints.yml to use pyproject.toml ([#6749](https://github.com/napari/napari/pull/6749)) +- Update description of `a`, `shift-a` points keybinds to reflect toggle ([#6750](https://github.com/napari/napari/pull/6750)) +- [Dockerfile] add missing opengl and x11 packages to the base image ([#6754](https://github.com/napari/napari/pull/6754)) +- Keep `qtpy` in headless tests and fix resulting failure ([#6764](https://github.com/napari/napari/pull/6764)) +- Fix sync slicing of not yet visible layers ([#6766](https://github.com/napari/napari/pull/6766)) +- Remove compression scheme when saving boolean arrays as tif ([#6807](https://github.com/napari/napari/pull/6807)) +- Solving visual glitch when displaying tracks with missing timepoints ([#6808](https://github.com/napari/napari/pull/6808)) +- Fix `napari.utils.misc.is_iterable` function ([#6811](https://github.com/napari/napari/pull/6811)) +- Remove redundant `_view_actions.py` ([#6821](https://github.com/napari/napari/pull/6821)) +- refresh when canvas_size_limits are changed ([#6834](https://github.com/napari/napari/pull/6834)) +- Fix selection size when canvas limits are set for Points ([#6853](https://github.com/napari/napari/pull/6853)) +- Ensure bounding_box lines stay up to date between 2D and 3D ([#6855](https://github.com/napari/napari/pull/6855)) +- Fix zarr reading with unrelated files ([#6857](https://github.com/napari/napari/pull/6857)) +- Two bug fixes concerning 4D surfaces, ie surfaces with (t, z, y, x) vertices ([#6874](https://github.com/napari/napari/pull/6874)) +- [bugfix] Drop if guard on notification_manager to enable show_info from Jupyter ([#6882](https://github.com/napari/napari/pull/6882)) +- [bugfix] Warn if float image data being saved to non-tiff ([#6884](https://github.com/napari/napari/pull/6884)) +- Disable copying layer transform metadata when selecting multiple layers ([#6887](https://github.com/napari/napari/pull/6887)) +- Fix use of scaling in vispy points ([#6894](https://github.com/napari/napari/pull/6894)) +- Fix point highlight thickness ([#6896](https://github.com/napari/napari/pull/6896)) +- Fix shapes mouse click and double click behavior on partial shapes ([#6912](https://github.com/napari/napari/pull/6912)) +- Again fix translate of overlays (this time with tests) ([#6927](https://github.com/napari/napari/pull/6927)) +- Add warning notification when connectivity errors occur in when opening the plugin manager ([#6931](https://github.com/napari/napari/pull/6931)) +- Fix array data copy behavior for numpy 1 and 2 consistency ([#6932](https://github.com/napari/napari/pull/6932)) +- [bugfix] Swap digit and `backspace` for Shapes & Points `delete_selected` keybinds ([#6933](https://github.com/napari/napari/pull/6933)) +- Fix callback for `File -> Open Folder...` action ([#6935](https://github.com/napari/napari/pull/6935)) +- fix `create_func` to respect `rename_argument` decorator ([#6970](https://github.com/napari/napari/pull/6970)) +- Do not crash napari viewer if error happen on open file via cli ([#6971](https://github.com/napari/napari/pull/6971)) +- Fix viewer scale bar color update ([#6989](https://github.com/napari/napari/pull/6989)) +- Remove NumPy 2 pin, fix direct colormap with keys outside data dtype ([#6998](https://github.com/napari/napari/pull/6998)) +- Fix switching from 2d to 3d with 2d points ([#7004](https://github.com/napari/napari/pull/7004)) +- Fix importerror and message for lxml_html_clean ([#7017](https://github.com/napari/napari/pull/7017)) ## API Changes -- Add .to_rgb_dict() to Theme class. ([napari/napari#4759](https://github.com/napari/napari/pull/4759)) -- Thick Slices (Dims as nD-box instead of nD-point) ([napari/napari#5522](https://github.com/napari/napari/pull/5522)) -- Lock dimensions / axes while rolling ([napari/napari#5986](https://github.com/napari/napari/pull/5986)) -- Remove deprecated code from Labels layer ([napari/napari#6641](https://github.com/napari/napari/pull/6641)) +- Add .to_rgb_dict() to Theme class. ([#4759](https://github.com/napari/napari/pull/4759)) +- Thick Slices (Dims as nD-box instead of nD-point) ([#5522](https://github.com/napari/napari/pull/5522)) +- Lock dimensions / axes while rolling ([#5986](https://github.com/napari/napari/pull/5986)) +- Remove deprecated code from Labels layer ([#6641](https://github.com/napari/napari/pull/6641)) ## Deprecations -- MAINT: Remove unused function. ([napari/napari#5041](https://github.com/napari/napari/pull/5041)) -- MAINT: remove deprecated Alias. ([napari/napari#5043](https://github.com/napari/napari/pull/5043)) -- Fix typing in _app_model ([napari/napari#6059](https://github.com/napari/napari/pull/6059)) -- Rename `edge_*` attributes and references to `border_*` on points layer ([napari/napari#6402](https://github.com/napari/napari/pull/6402)) -- Add deprecation message to CallDefault function partly resolves issue#6257 ([napari/napari#6901](https://github.com/napari/napari/pull/6901)) +- MAINT: Remove unused function. ([#5041](https://github.com/napari/napari/pull/5041)) +- MAINT: remove deprecated Alias. ([#5043](https://github.com/napari/napari/pull/5043)) +- Fix typing in _app_model ([#6059](https://github.com/napari/napari/pull/6059)) +- Rename `edge_*` attributes and references to `border_*` on points layer ([#6402](https://github.com/napari/napari/pull/6402)) +- Add deprecation message to CallDefault function partly resolves issue#6257 ([#6901](https://github.com/napari/napari/pull/6901)) ## Build Tools -- ci(dependabot): bump WebFreak001/deploy-nightly from 1.1.0 to 1.2.0 ([napari/napari#5159](https://github.com/napari/napari/pull/5159)) -- ci(dependabot): bump convictional/trigger-workflow-and-wait from 1.6.1 to 1.6.4 ([napari/napari#5293](https://github.com/napari/napari/pull/5293)) -- ci(dependabot): bump bruceadams/get-release from 1.2.3 to 1.3.2 ([napari/napari#5294](https://github.com/napari/napari/pull/5294)) -- ci(dependabot): bump convictional/trigger-workflow-and-wait from 1.6.4 to 1.6.5 ([napari/napari#5384](https://github.com/napari/napari/pull/5384)) -- ci(dependabot): bump WebFreak001/deploy-nightly from 1.2.0 to 2.0.0 ([napari/napari#5385](https://github.com/napari/napari/pull/5385)) -- ci(dependabot): bump docker/build-push-action from 3 to 4 ([napari/napari#5523](https://github.com/napari/napari/pull/5523)) -- ci(dependabot): bump toshimaru/auto-author-assign from 1.6.1 to 1.6.2 ([napari/napari#5524](https://github.com/napari/napari/pull/5524)) -- fix various keybinding/shortcut bugs ([napari/napari#5604](https://github.com/napari/napari/pull/5604)) -- ci(dependabot): bump peter-evans/create-pull-request from 4 to 5 ([napari/napari#5792](https://github.com/napari/napari/pull/5792)) -- ci(dependabot): bump actions/setup-python from 2 to 4 ([napari/napari#6201](https://github.com/napari/napari/pull/6201)) -- ci(dependabot): bump docker/login-action from 2.1.0 to 3.0.0 ([napari/napari#6263](https://github.com/napari/napari/pull/6263)) -- ci(dependabot): bump actions/checkout from 2 to 4 ([napari/napari#6264](https://github.com/napari/napari/pull/6264)) -- ci(dependabot): bump docker/build-push-action from 4 to 5 ([napari/napari#6280](https://github.com/napari/napari/pull/6280)) -- ci(dependabot): bump docker/metadata-action from 4 to 5 ([napari/napari#6282](https://github.com/napari/napari/pull/6282)) +- ci(dependabot): bump WebFreak001/deploy-nightly from 1.1.0 to 1.2.0 ([#5159](https://github.com/napari/napari/pull/5159)) +- ci(dependabot): bump convictional/trigger-workflow-and-wait from 1.6.1 to 1.6.4 ([#5293](https://github.com/napari/napari/pull/5293)) +- ci(dependabot): bump bruceadams/get-release from 1.2.3 to 1.3.2 ([#5294](https://github.com/napari/napari/pull/5294)) +- ci(dependabot): bump convictional/trigger-workflow-and-wait from 1.6.4 to 1.6.5 ([#5384](https://github.com/napari/napari/pull/5384)) +- ci(dependabot): bump WebFreak001/deploy-nightly from 1.2.0 to 2.0.0 ([#5385](https://github.com/napari/napari/pull/5385)) +- ci(dependabot): bump docker/build-push-action from 3 to 4 ([#5523](https://github.com/napari/napari/pull/5523)) +- ci(dependabot): bump toshimaru/auto-author-assign from 1.6.1 to 1.6.2 ([#5524](https://github.com/napari/napari/pull/5524)) +- fix various keybinding/shortcut bugs ([#5604](https://github.com/napari/napari/pull/5604)) +- ci(dependabot): bump peter-evans/create-pull-request from 4 to 5 ([#5792](https://github.com/napari/napari/pull/5792)) +- ci(dependabot): bump actions/setup-python from 2 to 4 ([#6201](https://github.com/napari/napari/pull/6201)) +- ci(dependabot): bump docker/login-action from 2.1.0 to 3.0.0 ([#6263](https://github.com/napari/napari/pull/6263)) +- ci(dependabot): bump actions/checkout from 2 to 4 ([#6264](https://github.com/napari/napari/pull/6264)) +- ci(dependabot): bump docker/build-push-action from 4 to 5 ([#6280](https://github.com/napari/napari/pull/6280)) +- ci(dependabot): bump docker/metadata-action from 4 to 5 ([#6282](https://github.com/napari/napari/pull/6282)) ## Documentation -- DOCS: Consolidate Makefiles ([napari/napari#5011](https://github.com/napari/napari/pull/5011)) -- Move docs to separate repo ([napari/napari#5216](https://github.com/napari/napari/pull/5216)) -- DOC Fix actions file docstrings ([napari/napari#5285](https://github.com/napari/napari/pull/5285)) -- Update build_docs workflow ([napari/napari#5405](https://github.com/napari/napari/pull/5405)) -- Bugfix: PR build of docs doesn't use proper napari versioning for substitutions ([napari/napari#5557](https://github.com/napari/napari/pull/5557)) -- Add link to napari/docs in Readme file. ([napari/napari#5814](https://github.com/napari/napari/pull/5814)) -- Fix typing in layers.labels ([napari/napari#5858](https://github.com/napari/napari/pull/5858)) -- DOC: fix incorrect doc in layer-base ([napari/napari#5996](https://github.com/napari/napari/pull/5996)) -- Add vortex optical flow example ([napari/napari#6041](https://github.com/napari/napari/pull/6041)) -- DOC Amend `open_sample` docstring str->URI ([napari/napari#6108](https://github.com/napari/napari/pull/6108)) -- DOC: misc syntax/typos ([napari/napari#6387](https://github.com/napari/napari/pull/6387)) -- DOC: misc fixes ([napari/napari#6429](https://github.com/napari/napari/pull/6429)) -- Change `vortex.py` example to enable its page build in the documentation ([napari/napari#6475](https://github.com/napari/napari/pull/6475)) -- Fix generation of layer creation functions docstrings ([napari/napari#6558](https://github.com/napari/napari/pull/6558)) -- Update docs constraints for napari-sphinx-theme 0.3.0 ([napari/napari#6598](https://github.com/napari/napari/pull/6598)) -- Update docstrings in `colormap_utils` for seed parameter effective range ([napari/napari#6688](https://github.com/napari/napari/pull/6688)) -- Update shapes.py add_rectangle and add_ellipse docstrings ([napari/napari#6704](https://github.com/napari/napari/pull/6704)) -- Update docstring for _get_console method of QtViewer class ([napari/napari#6723](https://github.com/napari/napari/pull/6723)) -- DOC Explicitly describe use of `show` in `make_napari_viewer` ([napari/napari#6724](https://github.com/napari/napari/pull/6724)) -- DOC Add info to `make_napari_viewer` docstring ([napari/napari#6774](https://github.com/napari/napari/pull/6774)) -- Expose NotebookScreenshot docstring ([napari/napari#6833](https://github.com/napari/napari/pull/6833)) -- DOC Update `_mock_app` docstring ([napari/napari#6903](https://github.com/napari/napari/pull/6903)) -- DOC Update menu action file docstrings ([napari/napari#6904](https://github.com/napari/napari/pull/6904)) -- Front-load core devs in citation.cff, sorted by commits ([napari/napari#6949](https://github.com/napari/napari/pull/6949)) -- Update CITATION.cff with contributors for 0.5.0 ([napari/napari#6958](https://github.com/napari/napari/pull/6958)) -- Remove examples from docs repo and use main repo instead ([napari/docs#1](https://github.com/napari/docs/pull/1)) -- Add build_docs action to PRs ([napari/docs#6](https://github.com/napari/docs/pull/6)) -- Fix examples path in build_docs PR workflow ([napari/docs#8](https://github.com/napari/docs/pull/8)) -- Updated issue and PR templates for this repo ([napari/docs#36](https://github.com/napari/docs/pull/36)) -- how to use annotation with create_widget ([napari/docs#68](https://github.com/napari/docs/pull/68)) -- Fix docs deployment with gallery env variable ([napari/docs#70](https://github.com/napari/docs/pull/70)) -- Switch from GabrielBB/xvfb-action to aganders3/headless-gui ([napari/docs#94](https://github.com/napari/docs/pull/94)) -- Update deploy_docs.yml to use metadata to use proper napari version substitution ([napari/docs#99](https://github.com/napari/docs/pull/99)) -- CircleCI setup for PR documentation previews ([napari/docs#104](https://github.com/napari/docs/pull/104)) -- Change `CIRCLECI_TOKEN` to `GITHUB_TOKEN` in `circleci.yml` workflow file. ([napari/docs#108](https://github.com/napari/docs/pull/108)) -- Documentation for alt-click visibility icon to show only that layer (napari/napari#5618) ([napari/docs#121](https://github.com/napari/docs/pull/121)) -- Add pr dependency check ([napari/docs#124](https://github.com/napari/docs/pull/124)) -- Layer documentation enhancements ([napari/docs#125](https://github.com/napari/docs/pull/125)) -- Using Dask and Napari to view and process 100ยตm resolution human brain dataset ([napari/docs#132](https://github.com/napari/docs/pull/132)) -- Fix CircleCI token name and remove outdated artifact action ([napari/docs#136](https://github.com/napari/docs/pull/136)) -- Add instructions on how to check preview of built docs ([napari/docs#140](https://github.com/napari/docs/pull/140)) -- Add documentation of udpate tokens for automated actions. ([napari/docs#144](https://github.com/napari/docs/pull/144)) -- Use constraints file when installing dependencies to build docs ([napari/docs#162](https://github.com/napari/docs/pull/162)) -- Fix build and deploy workflow ([napari/docs#164](https://github.com/napari/docs/pull/164)) -- Update README to display CZI logo for dark and light GitHub themes ([napari/docs#165](https://github.com/napari/docs/pull/165)) -- Use constraints during build docs on circleCI ([napari/docs#167](https://github.com/napari/docs/pull/167)) -- Fix closing of html comment in PR template ([napari/docs#168](https://github.com/napari/docs/pull/168)) -- Add documentation for #5806 ([napari/docs#177](https://github.com/napari/docs/pull/177)) -- Update Viewer tutorial for extra layer contextual menu visibility options (napari/#5574) ([napari/docs#183](https://github.com/napari/docs/pull/183)) -- Use python version range instead of min version ([napari/docs#194](https://github.com/napari/docs/pull/194)) -- Fix trailing whitespace with pre-commit ([napari/docs#198](https://github.com/napari/docs/pull/198)) -- Add extra note for Windows and Make to avoid running `rm -rf C:\Users` ([napari/docs#201](https://github.com/napari/docs/pull/201)) -- Plugin docs restructure of content ([napari/docs#203](https://github.com/napari/docs/pull/203)) -- Add documentation how to avoid fickering windows when running test locally ([napari/docs#215](https://github.com/napari/docs/pull/215)) -- Run PR depenecy check on every comment added to PR ([napari/docs#216](https://github.com/napari/docs/pull/216)) -- Adds guide on CI setup for docs building and website deployment ([napari/docs#220](https://github.com/napari/docs/pull/220)) -- Add TOML lexer to pygments set up ([napari/docs#229](https://github.com/napari/docs/pull/229)) -- Remove items not relevant to documentation in PR template ([napari/docs#234](https://github.com/napari/docs/pull/234)) -- [Content] Add docs for the new lock dims of the roll button ([napari/docs#242](https://github.com/napari/docs/pull/242)) -- Fix pydantic import ([napari/docs#255](https://github.com/napari/docs/pull/255)) -- Add option to fail docs build on gallery example execution error ([napari/docs#256](https://github.com/napari/docs/pull/256)) -- Uniform circleCI and build_docs workflows across repositories ([napari/docs#266](https://github.com/napari/docs/pull/266)) -- Improve next steps part of installation guide ([napari/docs#275](https://github.com/napari/docs/pull/275)) -- Re-apply: Image layers can't have converted data type ([napari/docs#276](https://github.com/napari/docs/pull/276)) -- Add section on extending napari ([napari/docs#286](https://github.com/napari/docs/pull/286)) -- Add env constraint to 'deploy_docs' workflow ([napari/docs#287](https://github.com/napari/docs/pull/287)) -- Add to console details to "How to launch `napari`" ([napari/docs#292](https://github.com/napari/docs/pull/292)) -- Add mp4 and png fallback to webm videos ([napari/docs#298](https://github.com/napari/docs/pull/298)) -- Use reference labels instead of paths ([napari/docs#301](https://github.com/napari/docs/pull/301)) -- Add theme page to 'how tos' ([napari/docs#302](https://github.com/napari/docs/pull/302)) -- Expand headless env testing in "Test organization" ([napari/docs#303](https://github.com/napari/docs/pull/303)) -- Add/improve documentation about napari's software architecture ([napari/docs#304](https://github.com/napari/docs/pull/304)) -- Replace references to 'edge' attributes with 'border' in Points docs ([napari/docs#306](https://github.com/napari/docs/pull/306)) -- Add documentation for `New from clipboard` feature ([napari/docs#307](https://github.com/napari/docs/pull/307)) -- NAP-6: Updates after discussion and review ([napari/docs#312](https://github.com/napari/docs/pull/312)) -- Use tabs for the install as Python package guide ([napari/docs#313](https://github.com/napari/docs/pull/313)) -- Fix execution of magicgui guide ([napari/docs#314](https://github.com/napari/docs/pull/314)) -- Exclude inherited tqdm members from documentation ([napari/docs#316](https://github.com/napari/docs/pull/316)) -- Re-organise 'Contributing' section ([napari/docs#318](https://github.com/napari/docs/pull/318)) -- Update packaging guide by removing outdated `constructor` fork details ([napari/docs#319](https://github.com/napari/docs/pull/319)) -- Update app-model documentation ([napari/docs#325](https://github.com/napari/docs/pull/325)) -- Remove sphinx pin to rely on upstream constraints ([napari/docs#334](https://github.com/napari/docs/pull/334)) -- Move note after screeenshot in install guide ([napari/docs#335](https://github.com/napari/docs/pull/335)) -- Update links to napari hub guide ([napari/docs#336](https://github.com/napari/docs/pull/336)) -- Fix broken links and references ([napari/docs#338](https://github.com/napari/docs/pull/338)) -- Add announcement banner html to enable config ([napari/docs#341](https://github.com/napari/docs/pull/341)) -- Add release notes for 0.4.19 ([napari/docs#346](https://github.com/napari/docs/pull/346)) -- Update version switcher for 0.4.19 release ([napari/docs#347](https://github.com/napari/docs/pull/347)) -- Add 0.4.19 to toc ([napari/docs#349](https://github.com/napari/docs/pull/349)) -- Fix execution of magicgui guide (2) ([napari/docs#351](https://github.com/napari/docs/pull/351)) -- Replace survey with help banner ([napari/docs#356](https://github.com/napari/docs/pull/356)) -- [ENH] Add napari.utils.transforms to API docs ([napari/docs#359](https://github.com/napari/docs/pull/359)) -- [Content] Add docs for napari/napari#6590 shift-option arrows to cycle through layers one at a time ([napari/docs#360](https://github.com/napari/docs/pull/360)) -- Clarify optionality of type annotations for writing a plugin ([napari/docs#367](https://github.com/napari/docs/pull/367)) -- Dynamicly calculate supported python version range ([napari/docs#368](https://github.com/napari/docs/pull/368)) -- Add info on testing `QWidget` visibility ([napari/docs#370](https://github.com/napari/docs/pull/370)) -- Summary of local setup for quickstart for devs ([napari/docs#372](https://github.com/napari/docs/pull/372)) -- Add info about tests that require window focus and `pyautogui` permissions setup on macOS ([napari/docs#375](https://github.com/napari/docs/pull/375)) -- Inlcude docstring of `make_napari_viewer` in `testing.md` ([napari/docs#378](https://github.com/napari/docs/pull/378)) -- Add cross reference to other testing info in `testing.md` ([napari/docs#379](https://github.com/napari/docs/pull/379)) -- Add note on using str instead of importing for napari type annot in plugins ([napari/docs#381](https://github.com/napari/docs/pull/381)) -- Use intersphinx for magicgui objects in `magicgui.md` ([napari/docs#382](https://github.com/napari/docs/pull/382)) -- Fix napari.org rendering ([napari/docs#386](https://github.com/napari/docs/pull/386)) -- Fix doc preview in PR CI ([napari/docs#389](https://github.com/napari/docs/pull/389)) -- Update `docs_deployment.md` and add paths to workflow ([napari/docs#390](https://github.com/napari/docs/pull/390)) -- Fix ALL Sphinx warnings ([napari/docs#393](https://github.com/napari/docs/pull/393)) -- Add note about autogeneration of plugin docs ([napari/docs#395](https://github.com/napari/docs/pull/395)) -- Add page on `magicgui` type registration ([napari/docs#399](https://github.com/napari/docs/pull/399)) -- Minor update to instructions for updating tokens ([napari/docs#401](https://github.com/napari/docs/pull/401)) -- Fix typo in `app_model.md` ([napari/docs#402](https://github.com/napari/docs/pull/402)) -- Update `app-model` doc with new information about `_mock_app` fixture ([napari/docs#403](https://github.com/napari/docs/pull/403)) -- Fixes display of inherited members of classes ([napari/docs#404](https://github.com/napari/docs/pull/404)) -- Improve our 'Creating widgets' section ([napari/docs#407](https://github.com/napari/docs/pull/407)) -- Fix broken magicgui and app-model docs links ([napari/docs#410](https://github.com/napari/docs/pull/410)) -- Add Python resources to Installation tutorial ([napari/docs#411](https://github.com/napari/docs/pull/411)) -- Update IFP rep on the SC to be Kyle and not Nick ([napari/docs#412](https://github.com/napari/docs/pull/412)) -- [Content] clarify Image to labels, Labels to Image, and add docs for shapes to labels behavior ([napari/docs#414](https://github.com/napari/docs/pull/414)) -- Update where app-model actions/providers/processors live in codebase ([napari/docs#416](https://github.com/napari/docs/pull/416)) -- Update conda section of install docs ([napari/docs#417](https://github.com/napari/docs/pull/417)) -- MacOS -> macOS ([napari/docs#418](https://github.com/napari/docs/pull/418)) -- Replace use of properties with features ([napari/docs#425](https://github.com/napari/docs/pull/425)) -- DOC Update finding submenu action in app-model ([napari/docs#426](https://github.com/napari/docs/pull/426)) +- DOCS: Consolidate Makefiles ([#5011](https://github.com/napari/napari/pull/5011)) +- Move docs to separate repo ([#5216](https://github.com/napari/napari/pull/5216)) +- DOC Fix actions file docstrings ([#5285](https://github.com/napari/napari/pull/5285)) +- Update build_docs workflow ([#5405](https://github.com/napari/napari/pull/5405)) +- Bugfix: PR build of docs doesn't use proper napari versioning for substitutions ([#5557](https://github.com/napari/napari/pull/5557)) +- Add link to napari/docs in Readme file. ([#5814](https://github.com/napari/napari/pull/5814)) +- Fix typing in layers.labels ([#5858](https://github.com/napari/napari/pull/5858)) +- DOC: fix incorrect doc in layer-base ([#5996](https://github.com/napari/napari/pull/5996)) +- Add vortex optical flow example ([#6041](https://github.com/napari/napari/pull/6041)) +- DOC Amend `open_sample` docstring str->URI ([#6108](https://github.com/napari/napari/pull/6108)) +- DOC: misc syntax/typos ([#6387](https://github.com/napari/napari/pull/6387)) +- DOC: misc fixes ([#6429](https://github.com/napari/napari/pull/6429)) +- Change `vortex.py` example to enable its page build in the documentation ([#6475](https://github.com/napari/napari/pull/6475)) +- Fix generation of layer creation functions docstrings ([#6558](https://github.com/napari/napari/pull/6558)) +- Update docs constraints for napari-sphinx-theme 0.3.0 ([#6598](https://github.com/napari/napari/pull/6598)) +- Update docstrings in `colormap_utils` for seed parameter effective range ([#6688](https://github.com/napari/napari/pull/6688)) +- Update shapes.py add_rectangle and add_ellipse docstrings ([#6704](https://github.com/napari/napari/pull/6704)) +- Update docstring for _get_console method of QtViewer class ([#6723](https://github.com/napari/napari/pull/6723)) +- DOC Explicitly describe use of `show` in `make_napari_viewer` ([#6724](https://github.com/napari/napari/pull/6724)) +- DOC Add info to `make_napari_viewer` docstring ([#6774](https://github.com/napari/napari/pull/6774)) +- Expose NotebookScreenshot docstring ([#6833](https://github.com/napari/napari/pull/6833)) +- DOC Update `_mock_app` docstring ([#6903](https://github.com/napari/napari/pull/6903)) +- DOC Update menu action file docstrings ([#6904](https://github.com/napari/napari/pull/6904)) +- Front-load core devs in citation.cff, sorted by commits ([#6949](https://github.com/napari/napari/pull/6949)) +- Update CITATION.cff with contributors for 0.5.0 ([#6958](https://github.com/napari/napari/pull/6958)) +- Remove examples from docs repo and use main repo instead ([docs#1](https://github.com/napari/docs/pull/1)) +- Add build_docs action to PRs ([docs#6](https://github.com/napari/docs/pull/6)) +- Fix examples path in build_docs PR workflow ([docs#8](https://github.com/napari/docs/pull/8)) +- Updated issue and PR templates for this repo ([docs#36](https://github.com/napari/docs/pull/36)) +- how to use annotation with create_widget ([docs#68](https://github.com/napari/docs/pull/68)) +- Fix docs deployment with gallery env variable ([docs#70](https://github.com/napari/docs/pull/70)) +- Switch from GabrielBB/xvfb-action to aganders3/headless-gui ([docs#94](https://github.com/napari/docs/pull/94)) +- Update deploy_docs.yml to use metadata to use proper napari version substitution ([docs#99](https://github.com/napari/docs/pull/99)) +- CircleCI setup for PR documentation previews ([docs#104](https://github.com/napari/docs/pull/104)) +- Change `CIRCLECI_TOKEN` to `GITHUB_TOKEN` in `circleci.yml` workflow file. ([docs#108](https://github.com/napari/docs/pull/108)) +- Documentation for alt-click visibility icon to show only that layer (napari/napari#5618) ([docs#121](https://github.com/napari/docs/pull/121)) +- Add pr dependency check ([docs#124](https://github.com/napari/docs/pull/124)) +- Layer documentation enhancements ([docs#125](https://github.com/napari/docs/pull/125)) +- Using Dask and Napari to view and process 100ยตm resolution human brain dataset ([docs#132](https://github.com/napari/docs/pull/132)) +- Fix CircleCI token name and remove outdated artifact action ([docs#136](https://github.com/napari/docs/pull/136)) +- Add instructions on how to check preview of built docs ([docs#140](https://github.com/napari/docs/pull/140)) +- Add documentation of udpate tokens for automated actions. ([docs#144](https://github.com/napari/docs/pull/144)) +- Use constraints file when installing dependencies to build docs ([docs#162](https://github.com/napari/docs/pull/162)) +- Fix build and deploy workflow ([docs#164](https://github.com/napari/docs/pull/164)) +- Update README to display CZI logo for dark and light GitHub themes ([docs#165](https://github.com/napari/docs/pull/165)) +- Use constraints during build docs on circleCI ([docs#167](https://github.com/napari/docs/pull/167)) +- Fix closing of html comment in PR template ([docs#168](https://github.com/napari/docs/pull/168)) +- Add documentation for #5806 ([docs#177](https://github.com/napari/docs/pull/177)) +- Update Viewer tutorial for extra layer contextual menu visibility options (napari/#5574) ([docs#183](https://github.com/napari/docs/pull/183)) +- Use python version range instead of min version ([docs#194](https://github.com/napari/docs/pull/194)) +- Fix trailing whitespace with pre-commit ([docs#198](https://github.com/napari/docs/pull/198)) +- Add extra note for Windows and Make to avoid running `rm -rf C:\Users` ([docs#201](https://github.com/napari/docs/pull/201)) +- Plugin docs restructure of content ([docs#203](https://github.com/napari/docs/pull/203)) +- Add documentation how to avoid fickering windows when running test locally ([docs#215](https://github.com/napari/docs/pull/215)) +- Run PR depenecy check on every comment added to PR ([docs#216](https://github.com/napari/docs/pull/216)) +- Adds guide on CI setup for docs building and website deployment ([docs#220](https://github.com/napari/docs/pull/220)) +- Add TOML lexer to pygments set up ([docs#229](https://github.com/napari/docs/pull/229)) +- Remove items not relevant to documentation in PR template ([docs#234](https://github.com/napari/docs/pull/234)) +- [Content] Add docs for the new lock dims of the roll button ([docs#242](https://github.com/napari/docs/pull/242)) +- Fix pydantic import ([docs#255](https://github.com/napari/docs/pull/255)) +- Add option to fail docs build on gallery example execution error ([docs#256](https://github.com/napari/docs/pull/256)) +- Uniform circleCI and build_docs workflows across repositories ([docs#266](https://github.com/napari/docs/pull/266)) +- Improve next steps part of installation guide ([docs#275](https://github.com/napari/docs/pull/275)) +- Re-apply: Image layers can't have converted data type ([docs#276](https://github.com/napari/docs/pull/276)) +- Add section on extending napari ([docs#286](https://github.com/napari/docs/pull/286)) +- Add env constraint to 'deploy_docs' workflow ([docs#287](https://github.com/napari/docs/pull/287)) +- Add to console details to "How to launch `napari`" ([docs#292](https://github.com/napari/docs/pull/292)) +- Add mp4 and png fallback to webm videos ([docs#298](https://github.com/napari/docs/pull/298)) +- Use reference labels instead of paths ([docs#301](https://github.com/napari/docs/pull/301)) +- Add theme page to 'how tos' ([docs#302](https://github.com/napari/docs/pull/302)) +- Expand headless env testing in "Test organization" ([docs#303](https://github.com/napari/docs/pull/303)) +- Add/improve documentation about napari's software architecture ([docs#304](https://github.com/napari/docs/pull/304)) +- Replace references to 'edge' attributes with 'border' in Points docs ([docs#306](https://github.com/napari/docs/pull/306)) +- Add documentation for `New from clipboard` feature ([docs#307](https://github.com/napari/docs/pull/307)) +- NAP-6: Updates after discussion and review ([docs#312](https://github.com/napari/docs/pull/312)) +- Use tabs for the install as Python package guide ([docs#313](https://github.com/napari/docs/pull/313)) +- Fix execution of magicgui guide ([docs#314](https://github.com/napari/docs/pull/314)) +- Exclude inherited tqdm members from documentation ([docs#316](https://github.com/napari/docs/pull/316)) +- Re-organise 'Contributing' section ([docs#318](https://github.com/napari/docs/pull/318)) +- Update packaging guide by removing outdated `constructor` fork details ([docs#319](https://github.com/napari/docs/pull/319)) +- Update app-model documentation ([docs#325](https://github.com/napari/docs/pull/325)) +- Remove sphinx pin to rely on upstream constraints ([docs#334](https://github.com/napari/docs/pull/334)) +- Move note after screeenshot in install guide ([docs#335](https://github.com/napari/docs/pull/335)) +- Update links to napari hub guide ([docs#336](https://github.com/napari/docs/pull/336)) +- Fix broken links and references ([docs#338](https://github.com/napari/docs/pull/338)) +- Add announcement banner html to enable config ([docs#341](https://github.com/napari/docs/pull/341)) +- Add release notes for 0.4.19 ([docs#346](https://github.com/napari/docs/pull/346)) +- Update version switcher for 0.4.19 release ([docs#347](https://github.com/napari/docs/pull/347)) +- Add 0.4.19 to toc ([docs#349](https://github.com/napari/docs/pull/349)) +- Fix execution of magicgui guide (2) ([docs#351](https://github.com/napari/docs/pull/351)) +- Replace survey with help banner ([docs#356](https://github.com/napari/docs/pull/356)) +- [ENH] Add napari.utils.transforms to API docs ([docs#359](https://github.com/napari/docs/pull/359)) +- [Content] Add docs for napari/napari#6590 shift-option arrows to cycle through layers one at a time ([docs#360](https://github.com/napari/docs/pull/360)) +- Clarify optionality of type annotations for writing a plugin ([docs#367](https://github.com/napari/docs/pull/367)) +- Dynamicly calculate supported python version range ([docs#368](https://github.com/napari/docs/pull/368)) +- Add info on testing `QWidget` visibility ([docs#370](https://github.com/napari/docs/pull/370)) +- Summary of local setup for quickstart for devs ([docs#372](https://github.com/napari/docs/pull/372)) +- Add info about tests that require window focus and `pyautogui` permissions setup on macOS ([docs#375](https://github.com/napari/docs/pull/375)) +- Inlcude docstring of `make_napari_viewer` in `testing.md` ([docs#378](https://github.com/napari/docs/pull/378)) +- Add cross reference to other testing info in `testing.md` ([docs#379](https://github.com/napari/docs/pull/379)) +- Add note on using str instead of importing for napari type annot in plugins ([docs#381](https://github.com/napari/docs/pull/381)) +- Use intersphinx for magicgui objects in `magicgui.md` ([docs#382](https://github.com/napari/docs/pull/382)) +- Fix napari.org rendering ([docs#386](https://github.com/napari/docs/pull/386)) +- Fix doc preview in PR CI ([docs#389](https://github.com/napari/docs/pull/389)) +- Update `docs_deployment.md` and add paths to workflow ([docs#390](https://github.com/napari/docs/pull/390)) +- Fix ALL Sphinx warnings ([docs#393](https://github.com/napari/docs/pull/393)) +- Add note about autogeneration of plugin docs ([docs#395](https://github.com/napari/docs/pull/395)) +- Add page on `magicgui` type registration ([docs#399](https://github.com/napari/docs/pull/399)) +- Minor update to instructions for updating tokens ([docs#401](https://github.com/napari/docs/pull/401)) +- Fix typo in `app_model.md` ([docs#402](https://github.com/napari/docs/pull/402)) +- Update `app-model` doc with new information about `_mock_app` fixture ([docs#403](https://github.com/napari/docs/pull/403)) +- Fixes display of inherited members of classes ([docs#404](https://github.com/napari/docs/pull/404)) +- Improve our 'Creating widgets' section ([docs#407](https://github.com/napari/docs/pull/407)) +- Fix broken magicgui and app-model docs links ([docs#410](https://github.com/napari/docs/pull/410)) +- Add Python resources to Installation tutorial ([docs#411](https://github.com/napari/docs/pull/411)) +- Update IFP rep on the SC to be Kyle and not Nick ([docs#412](https://github.com/napari/docs/pull/412)) +- [Content] clarify Image to labels, Labels to Image, and add docs for shapes to labels behavior ([docs#414](https://github.com/napari/docs/pull/414)) +- Update where app-model actions/providers/processors live in codebase ([docs#416](https://github.com/napari/docs/pull/416)) +- Update conda section of install docs ([docs#417](https://github.com/napari/docs/pull/417)) +- MacOS -> macOS ([docs#418](https://github.com/napari/docs/pull/418)) +- Replace use of properties with features ([docs#425](https://github.com/napari/docs/pull/425)) +- DOC Update finding submenu action in app-model ([docs#426](https://github.com/napari/docs/pull/426)) ## Other Pull Requests -- Add tests to cover slicing behavior when changing layers and data ([napari/napari#4819](https://github.com/napari/napari/pull/4819)) -- Add examples to remote sample data & synthetic tests [for async work] ([napari/napari#4987](https://github.com/napari/napari/pull/4987)) -- Use app model for plugins menu ([napari/napari#4991](https://github.com/napari/napari/pull/4991)) -- MAINT: Misc unused variables and import. ([napari/napari#5051](https://github.com/napari/napari/pull/5051)) -- Use same name in yml file and test name. ([napari/napari#5065](https://github.com/napari/napari/pull/5065)) -- MAINT: Remove QtStateButton, marked for removal in 0.4.14 ([napari/napari#5066](https://github.com/napari/napari/pull/5066)) -- Update config directory paths for perfmon tools ([napari/napari#5081](https://github.com/napari/napari/pull/5081)) -- Use app-model keybindings internally ([napari/napari#5103](https://github.com/napari/napari/pull/5103)) -- Ignore tags directory generated by Sphinx build ([napari/napari#5104](https://github.com/napari/napari/pull/5104)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5105](https://github.com/napari/napari/pull/5105)) -- Clarify package installer interface with abstract base class, and Pip/Conda subclasses (continued) ([napari/napari#5124](https://github.com/napari/napari/pull/5124)) -- MAINT: comment out macos briefcase bundle ([napari/napari#5144](https://github.com/napari/napari/pull/5144)) -- Use nightly.link to add comment to docs artifacts on PRs ([napari/napari#5148](https://github.com/napari/napari/pull/5148)) -- Attempt to fix benchmark failing. ([napari/napari#5175](https://github.com/napari/napari/pull/5175)) -- MAINT: Use positional only to make code a bit more idiomatic. ([napari/napari#5179](https://github.com/napari/napari/pull/5179)) -- Update vendoring tool to check on matplotlib colormap ([napari/napari#5181](https://github.com/napari/napari/pull/5181)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5197](https://github.com/napari/napari/pull/5197)) -- Update plugin dialog design & functionality to add conda install ([napari/napari#5198](https://github.com/napari/napari/pull/5198)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5237](https://github.com/napari/napari/pull/5237)) -- Benchmark PR reporting fix ([napari/napari#5246](https://github.com/napari/napari/pull/5246)) -- Image slice request and response for async slicing ([napari/napari#5259](https://github.com/napari/napari/pull/5259)) -- Points slice request and response for new async slicing ([napari/napari#5264](https://github.com/napari/napari/pull/5264)) -- Do not use random shapes in napari_builtins conftest fixtures ([napari/napari#5287](https://github.com/napari/napari/pull/5287)) -- Add async slicing "force sync" ([napari/napari#5299](https://github.com/napari/napari/pull/5299)) -- Use plugin display_name for widget parent menu ([napari/napari#5305](https://github.com/napari/napari/pull/5305)) -- update benchmark ci ([napari/napari#5309](https://github.com/napari/napari/pull/5309)) -- Fix text label translation ([napari/napari#5321](https://github.com/napari/napari/pull/5321)) -- Exclude vendored things from absolutify imports ([napari/napari#5324](https://github.com/napari/napari/pull/5324)) -- Add test coverage for async slicing of labels ([napari/napari#5325](https://github.com/napari/napari/pull/5325)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5336](https://github.com/napari/napari/pull/5336)) -- Fully specify cache path in pip install job ([napari/napari#5357](https://github.com/napari/napari/pull/5357)) -- Add pre commit steep for remove unused imports ([napari/napari#5359](https://github.com/napari/napari/pull/5359)) -- Add titles and tags to new gallery examples ([napari/napari#5364](https://github.com/napari/napari/pull/5364)) -- Add GUI test coverage for changes to Labels.show_selected_label ([napari/napari#5372](https://github.com/napari/napari/pull/5372)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5375](https://github.com/napari/napari/pull/5375)) -- Calculate text positions for constant strings ([napari/napari#5387](https://github.com/napari/napari/pull/5387)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5392](https://github.com/napari/napari/pull/5392)) -- Configure `fail_on_no_env` for `tox-gh-actions` ([napari/napari#5408](https://github.com/napari/napari/pull/5408)) -- Wait until a blocked test task is actually running ([napari/napari#5424](https://github.com/napari/napari/pull/5424)) -- Refactor: Qt viewer and VispyCanvas ([napari/napari#5432](https://github.com/napari/napari/pull/5432)) -- Installation: don't include pyqt5 (from [all]) in [dev] installs ([napari/napari#5438](https://github.com/napari/napari/pull/5438)) -- Add auto canceling previous test after a new PR commit ([napari/napari#5453](https://github.com/napari/napari/pull/5453)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5462](https://github.com/napari/napari/pull/5462)) -- Add digital watermark to napari PNG screenshots ([napari/napari#5494](https://github.com/napari/napari/pull/5494)) -- MAINT: add time limit for CI. ([napari/napari#5495](https://github.com/napari/napari/pull/5495)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5502](https://github.com/napari/napari/pull/5502)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5518](https://github.com/napari/napari/pull/5518)) -- MAINT: Fix vendoring script and track closest commit. ([napari/napari#5537](https://github.com/napari/napari/pull/5537)) -- Fix translation checks in CI ([napari/napari#5562](https://github.com/napari/napari/pull/5562)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5575](https://github.com/napari/napari/pull/5575)) -- Maint: Add time limit to --pre and comprehensive tests. ([napari/napari#5597](https://github.com/napari/napari/pull/5597)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5606](https://github.com/napari/napari/pull/5606)) -- Bugfix: ensure `tool` is set to conda for conda-installed packages ([napari/napari#5624](https://github.com/napari/napari/pull/5624)) -- FIX: fix translation checking script. ([napari/napari#5626](https://github.com/napari/napari/pull/5626)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5627](https://github.com/napari/napari/pull/5627)) -- [maint] Update translation string wizard to offer auto-suggestions ([napari/napari#5643](https://github.com/napari/napari/pull/5643)) -- Update PR template to front-load issue references ([napari/napari#5659](https://github.com/napari/napari/pull/5659)) -- MAINT: Move suspected segfaulting test into its own file. ([napari/napari#5676](https://github.com/napari/napari/pull/5676)) -- Unvendor lazy_loader ([napari/napari#5681](https://github.com/napari/napari/pull/5681)) -- Add CircleCI to enable docs preview on PRs ([napari/napari#5714](https://github.com/napari/napari/pull/5714)) -- Check that release labels are added to each PR ([napari/napari#5733](https://github.com/napari/napari/pull/5733)) -- [MAINT] Remove plugin manager source (move to napari/napari-plugin-manager) ([napari/napari#5743](https://github.com/napari/napari/pull/5743)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5765](https://github.com/napari/napari/pull/5765)) -- Use `GITHUB_TOKEN` to create test dependecies PR ([napari/napari#5774](https://github.com/napari/napari/pull/5774)) -- Use fine grained personal token for test contrains and vendored update ([napari/napari#5777](https://github.com/napari/napari/pull/5777)) -- Add tests for io utils to save images ([napari/napari#5780](https://github.com/napari/napari/pull/5780)) -- Use tox-min-req for min-req tests ([napari/napari#5784](https://github.com/napari/napari/pull/5784)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5793](https://github.com/napari/napari/pull/5793)) -- Update README to display CZI logo for dark and light GitHub themes ([napari/napari#5800](https://github.com/napari/napari/pull/5800)) -- Improve discoverability of napari/docs repository. ([napari/napari#5821](https://github.com/napari/napari/pull/5821)) -- MAINT: Add backend info to CI comprehensive test names ([napari/napari#5822](https://github.com/napari/napari/pull/5822)) -- Move mypy config to pyproject.toml ([napari/napari#5825](https://github.com/napari/napari/pull/5825)) -- Fix some typing in colormap utils ([napari/napari#5832](https://github.com/napari/napari/pull/5832)) -- Improve type annotation for image layer and related ([napari/napari#5843](https://github.com/napari/napari/pull/5843)) -- Fix typing errors in layers.image ([napari/napari#5852](https://github.com/napari/napari/pull/5852)) -- Add tests/more tests to widgets with low coverage ([napari/napari#5864](https://github.com/napari/napari/pull/5864)) -- Fix type checking for layers.vectors ([napari/napari#5870](https://github.com/napari/napari/pull/5870)) -- Fix type checking in layers.surface ([napari/napari#5871](https://github.com/napari/napari/pull/5871)) -- test: [Automatic] Constraints upgrades: `dask`, `hypothesis`, `imageio`, `napari-svg`, `pandas`, `pint`, `pydantic`, `pytest-cov`, `tensorstore` ([napari/napari#5881](https://github.com/napari/napari/pull/5881)) -- Use a nightly pypi index for numpy & scipy, used by the --pre build ([napari/napari#5882](https://github.com/napari/napari/pull/5882)) -- Remove pycln (redundant with ruff F401 rule) ([napari/napari#5887](https://github.com/napari/napari/pull/5887)) -- Mock QtConsole in tests ([napari/napari#5890](https://github.com/napari/napari/pull/5890)) -- Consistent types for vector inputs/outputs in base layer ([napari/napari#5892](https://github.com/napari/napari/pull/5892)) -- MAINT: Fix more typing and enable mypy on more files. ([napari/napari#5897](https://github.com/napari/napari/pull/5897)) -- Add __all__ to qthreading and progress ([napari/napari#5898](https://github.com/napari/napari/pull/5898)) -- Fix typing in translations ([napari/napari#5900](https://github.com/napari/napari/pull/5900)) -- ENH: Use dict to set `MenuID` in view actions ([napari/napari#5903](https://github.com/napari/napari/pull/5903)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#5906](https://github.com/napari/napari/pull/5906)) -- [Maint] CI: Use `RUNNER_OS` instead of `PLATFORM` ([napari/napari#5907](https://github.com/napari/napari/pull/5907)) -- MAINT: GitHub action Timeout increased by 5 minutes ([napari/napari#5934](https://github.com/napari/napari/pull/5934)) -- Some napari.utils typing fixes ([napari/napari#5936](https://github.com/napari/napari/pull/5936)) -- Add documentation, enhancement and maintenance fields to PR template ([napari/napari#5943](https://github.com/napari/napari/pull/5943)) -- Add docs constraints file ([napari/napari#5988](https://github.com/napari/napari/pull/5988)) -- Fix optional arg typing in napari._qt.containers ([napari/napari#6004](https://github.com/napari/napari/pull/6004)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6009](https://github.com/napari/napari/pull/6009)) -- Partially fix translations testing ([napari/napari#6014](https://github.com/napari/napari/pull/6014)) -- Fix typing in napari.layers.base ([napari/napari#6028](https://github.com/napari/napari/pull/6028)) -- Add test for `QtToolTipEventFilter` ([napari/napari#6066](https://github.com/napari/napari/pull/6066)) -- Pin numpy below 2 ([napari/napari#6073](https://github.com/napari/napari/pull/6073)) -- Fix typing in napari.components.overlays ([napari/napari#6076](https://github.com/napari/napari/pull/6076)) -- Fix transform_utils typing ([napari/napari#6082](https://github.com/napari/napari/pull/6082)) -- Task: remove html comments from pr description ([napari/napari#6086](https://github.com/napari/napari/pull/6086)) -- Reduce noise in PR template ([napari/napari#6092](https://github.com/napari/napari/pull/6092)) -- Allow contributors to update test constraints using a comment ([napari/napari#6101](https://github.com/napari/napari/pull/6101)) -- Exclude ... from coverage ([napari/napari#6103](https://github.com/napari/napari/pull/6103)) -- Pass `QT_QPA_PLATFORM` through tox configuration ([napari/napari#6110](https://github.com/napari/napari/pull/6110)) -- Remove unused parameters from private function. ([napari/napari#6131](https://github.com/napari/napari/pull/6131)) -- Fix typing in napari.utils.perf ([napari/napari#6132](https://github.com/napari/napari/pull/6132)) -- Use faster version of black ([napari/napari#6133](https://github.com/napari/napari/pull/6133)) -- Fix some typing in napari.utils.events ([napari/napari#6142](https://github.com/napari/napari/pull/6142)) -- test: [Automatic] Constraints upgrades: `hypothesis`, `magicgui`, `psygnal`, `tensorstore`, `tifffile`, `tqdm`, `virtualenv` ([napari/napari#6143](https://github.com/napari/napari/pull/6143)) -- Update PR editing script to remove html. ([napari/napari#6144](https://github.com/napari/napari/pull/6144)) -- Update PR editing action script to remove double empty lines in PR description ([napari/napari#6150](https://github.com/napari/napari/pull/6150)) -- More typing of napari/utils. ([napari/napari#6152](https://github.com/napari/napari/pull/6152)) -- Update typing informations in `_app_model/injection/_processors.py` and `components/layerlist.py` ([napari/napari#6153](https://github.com/napari/napari/pull/6153)) -- Fix types in 'napari.utils.colormaps.categorical_colormap' ([napari/napari#6154](https://github.com/napari/napari/pull/6154)) -- Fix incorrect types in color_transformations. ([napari/napari#6155](https://github.com/napari/napari/pull/6155)) -- Refactor test running for reduce CI time ([napari/napari#6156](https://github.com/napari/napari/pull/6156)) -- Check if milestone and label is added to PR ([napari/napari#6158](https://github.com/napari/napari/pull/6158)) -- Enable type-checking for `napari.components.experimental`. ([napari/napari#6166](https://github.com/napari/napari/pull/6166)) -- Fix typing and clearer code in evented-set. ([napari/napari#6168](https://github.com/napari/napari/pull/6168)) -- Fix and enable typing of selectable lists ([napari/napari#6169](https://github.com/napari/napari/pull/6169)) -- Add PyQt6 to tox -e mypy ([napari/napari#6170](https://github.com/napari/napari/pull/6170)) -- Remove an "if" that prevents proper run of "upgrade dependecies" wokflow if triggered by comment ([napari/napari#6171](https://github.com/napari/napari/pull/6171)) -- Misc typing fixes ([napari/napari#6172](https://github.com/napari/napari/pull/6172)) -- Fix typo in path to file for upgrade dependencies ([napari/napari#6173](https://github.com/napari/napari/pull/6173)) -- Update constraints upgrade script to run with appropriate events ([napari/napari#6175](https://github.com/napari/napari/pull/6175)) -- Add missed "and milestone" ([napari/napari#6176](https://github.com/napari/napari/pull/6176)) -- Do not clone repository to subdirectory in examples test ([napari/napari#6181](https://github.com/napari/napari/pull/6181)) -- Add a timeout to some GH actions tests. ([napari/napari#6187](https://github.com/napari/napari/pull/6187)) -- Fix typing in components.viewer_model ([napari/napari#6188](https://github.com/napari/napari/pull/6188)) -- DOC Add comment in `_instantiate_dock_widget` ([napari/napari#6189](https://github.com/napari/napari/pull/6189)) -- Fix some typing in napari.components ([napari/napari#6203](https://github.com/napari/napari/pull/6203)) -- Allow to use all ViewerModel kwargs in Viewer constructor ([napari/napari#6209](https://github.com/napari/napari/pull/6209)) -- Fix upgrade dependencies wokflow ([napari/napari#6211](https://github.com/napari/napari/pull/6211)) -- Replace more np.all( ... = ...) with np.array_equal ([napari/napari#6213](https://github.com/napari/napari/pull/6213)) -- cleanup np.all(... == ...) from test_points.py ([napari/napari#6217](https://github.com/napari/napari/pull/6217)) -- remove np.all(... == ...) in test_surface.py ([napari/napari#6218](https://github.com/napari/napari/pull/6218)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6221](https://github.com/napari/napari/pull/6221)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6229](https://github.com/napari/napari/pull/6229)) -- Move `test_file_menu.py` to new app model location ([napari/napari#6233](https://github.com/napari/napari/pull/6233)) -- More removal of np.all(... == ...) ([napari/napari#6238](https://github.com/napari/napari/pull/6238)) -- Remove sphinx dependency from defaults dependecies ([napari/napari#6239](https://github.com/napari/napari/pull/6239)) -- MAINT: Use scipy builtins rotation to compute quaternions. ([napari/napari#6241](https://github.com/napari/napari/pull/6241)) -- MAINT: Replace `assert np.all(? == ?)` with `assert_array_equal` ([napari/napari#6244](https://github.com/napari/napari/pull/6244)) -- Fix some typing in napari._vispy ([napari/napari#6245](https://github.com/napari/napari/pull/6245)) -- Type _WeakCounter ([napari/napari#6246](https://github.com/napari/napari/pull/6246)) -- Fix typing in napari.utils.theme ([napari/napari#6247](https://github.com/napari/napari/pull/6247)) -- remove: napari.qt.progress (deprecated in 0.4.11) ([napari/napari#6252](https://github.com/napari/napari/pull/6252)) -- Restore 'V' keybinding for layer visibiltiy toggle ([napari/napari#6261](https://github.com/napari/napari/pull/6261)) -- Update `app-model`, `dask`, `fsspec`, `hypothesis`, `imageio`, `ipython`, `jsonschema`, `matplotlib`, `numpy`, `pandas`, `pillow`, `psygnal`, `pytest`, `qtconsole`, `qtpy`, `rich`, `scipy`, `superqt`, `tensorstore`, `tifffile`, `virtualenv`, `xarray`, `zarr` ([napari/napari#6265](https://github.com/napari/napari/pull/6265)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6266](https://github.com/napari/napari/pull/6266)) -- Fix nitpicks in `id` and `title` `Action` fields in samples menu ([napari/napari#6267](https://github.com/napari/napari/pull/6267)) -- ENH Make `_open_preferences_dialog` return `PreferencesDialog` ([napari/napari#6269](https://github.com/napari/napari/pull/6269)) -- Bump app-model ([napari/napari#6271](https://github.com/napari/napari/pull/6271)) -- Use `MenuID` in sample menu tests ([napari/napari#6273](https://github.com/napari/napari/pull/6273)) -- Fix benchmark suite virtualenvs, and disable broken memory benchmarks ([napari/napari#6278](https://github.com/napari/napari/pull/6278)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6287](https://github.com/napari/napari/pull/6287)) -- Adding helper function for events and property deprecation ([napari/napari#6288](https://github.com/napari/napari/pull/6288)) -- Fix labels for dependabot ([napari/napari#6290](https://github.com/napari/napari/pull/6290)) -- [Maintenance] Fix missing v in the docker-login action version ([napari/napari#6291](https://github.com/napari/napari/pull/6291)) -- MAINT: Remove auto-author-assign ([napari/napari#6292](https://github.com/napari/napari/pull/6292)) -- Remove a few of the last instance of np.all(? == ?). ([napari/napari#6293](https://github.com/napari/napari/pull/6293)) -- Enable memory benchmarks for layers ([napari/napari#6295](https://github.com/napari/napari/pull/6295)) -- [Maint] Add zarr to optional dependencies in pyproject.toml ([napari/napari#6297](https://github.com/napari/napari/pull/6297)) -- Set permissions to `allow upgrate_test_contstraints` work ([napari/napari#6298](https://github.com/napari/napari/pull/6298)) -- Revert "MAINT: Use scipy builtins rotation to compute quaternions. (#6241)" ([napari/napari#6299](https://github.com/napari/napari/pull/6299)) -- Add pystack to debug hanging linux test ([napari/napari#6310](https://github.com/napari/napari/pull/6310)) -- [Maintenance] Update bug_report template to add napari --info ([napari/napari#6312](https://github.com/napari/napari/pull/6312)) -- Use yaml for bug report Issue template ([napari/napari#6313](https://github.com/napari/napari/pull/6313)) -- Add pre-commit check for basic formattings bugs ([napari/napari#6315](https://github.com/napari/napari/pull/6315)) -- Add coverage report upload to comprehensive test ([napari/napari#6316](https://github.com/napari/napari/pull/6316)) -- Update `dask`, `hypothesis`, `numpy`, `pillow`, `pretend`, `psutil`, `pyqt5`, `pyqt6`, `pyside6`, `superqt` ([napari/napari#6322](https://github.com/napari/napari/pull/6322)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6323](https://github.com/napari/napari/pull/6323)) -- Fix pre-commit configuration ([napari/napari#6328](https://github.com/napari/napari/pull/6328)) -- Directly set author of commit in vendored workflow ([napari/napari#6329](https://github.com/napari/napari/pull/6329)) -- Bump Mypy and some type fixes. ([napari/napari#6332](https://github.com/napari/napari/pull/6332)) -- Add 'raise' option back to `strict_qt` in `make_napari_viewer` ([napari/napari#6335](https://github.com/napari/napari/pull/6335)) -- Rename test_strings to validate_strings to stop confusing pytest ([napari/napari#6338](https://github.com/napari/napari/pull/6338)) -- "no-commit-to-branch" is preventing contribution. ([napari/napari#6341](https://github.com/napari/napari/pull/6341)) -- MAINT: Refine Mypy config for qtpy. ([napari/napari#6342](https://github.com/napari/napari/pull/6342)) -- Disable ptrace protection to make pytest-pystack work ([napari/napari#6343](https://github.com/napari/napari/pull/6343)) -- Fix labeler configuration ([napari/napari#6344](https://github.com/napari/napari/pull/6344)) -- Add codecov token to reduce propability of fail to upload from main branch ([napari/napari#6346](https://github.com/napari/napari/pull/6346)) -- Fix upstream deprecation: change `np.alltrue` to `np.array_equiv` ([napari/napari#6347](https://github.com/napari/napari/pull/6347)) -- Maint: mypy opt-in to opt-out. ([napari/napari#6352](https://github.com/napari/napari/pull/6352)) -- Full typing of a few more files in napari.utils.* ([napari/napari#6356](https://github.com/napari/napari/pull/6356)) -- Fix build wheel workflow file name ([napari/napari#6357](https://github.com/napari/napari/pull/6357)) -- Fix make release workflow ([napari/napari#6359](https://github.com/napari/napari/pull/6359)) -- Typing: Fully type 5 more files ([napari/napari#6361](https://github.com/napari/napari/pull/6361)) -- Update examples/clipboard_.py to fix FutureWarning ([napari/napari#6365](https://github.com/napari/napari/pull/6365)) -- Update `fsspec`, `imageio`, `magicgui`, `napari-console`, `npe2`, `pillow`, `tensorstore`, `xarray` ([napari/napari#6367](https://github.com/napari/napari/pull/6367)) -- fix `TransformChain.__getitem__` signature ([napari/napari#6369](https://github.com/napari/napari/pull/6369)) -- Fix permission for JasonEtco/create-an-issue@v2 action ([napari/napari#6370](https://github.com/napari/napari/pull/6370)) -- Automatic add `maintenance` label to upgrade dependecies workflow ([napari/napari#6371](https://github.com/napari/napari/pull/6371)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6373](https://github.com/napari/napari/pull/6373)) -- Ensure the conda bundle workflows have the appropriate permissions ([napari/napari#6379](https://github.com/napari/napari/pull/6379)) -- Skip redundant pre-commit hooks ([napari/napari#6389](https://github.com/napari/napari/pull/6389)) -- Update `babel`, `dask`, `pandas`, `pooch`, `pytest`, `qtpy`, `virtualenv` ([napari/napari#6398](https://github.com/napari/napari/pull/6398)) -- Fix environment variable name name in docs build ([napari/napari#6401](https://github.com/napari/napari/pull/6401)) -- ci(dependabot): bump actions/checkout from 3 to 4 ([napari/napari#6403](https://github.com/napari/napari/pull/6403)) -- Fix some weird behaviors when using delete and backspace keys as shortcuts (with or without modifiers) ([napari/napari#6406](https://github.com/napari/napari/pull/6406)) -- Use ruff to format strings to single quotes. ([napari/napari#6407](https://github.com/napari/napari/pull/6407)) -- Fix linter warnings in qt_main_window ([napari/napari#6409](https://github.com/napari/napari/pull/6409)) -- Unify circleci and build_docs workflows across repositories ([napari/napari#6417](https://github.com/napari/napari/pull/6417)) -- Fix `test_singlescreen_window_settings` to allow it to run locally on multiscreen configuration ([napari/napari#6422](https://github.com/napari/napari/pull/6422)) -- refactor `napari/_qt/_tests/test_async_slicing.py` to reduce fragility of test ([napari/napari#6423](https://github.com/napari/napari/pull/6423)) -- Simplify unused parameters of Quaternion functions. ([napari/napari#6424](https://github.com/napari/napari/pull/6424)) -- Still More typing V ([napari/napari#6427](https://github.com/napari/napari/pull/6427)) -- Synchronize `rgb` docstring of `ViewerModel.add_image` and `Image` constructor ([napari/napari#6428](https://github.com/napari/napari/pull/6428)) -- Fix milestone and label checker to be triggered by `milestoned`/`demilestoned` events ([napari/napari#6430](https://github.com/napari/napari/pull/6430)) -- Refactor Skipped test ([napari/napari#6431](https://github.com/napari/napari/pull/6431)) -- Update `dask`, `hypothesis`, `numpy`, `pandas`, `tensorstore`, `wrapt` ([napari/napari#6441](https://github.com/napari/napari/pull/6441)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6447](https://github.com/napari/napari/pull/6447)) -- add addtional pystack arguments ([napari/napari#6457](https://github.com/napari/napari/pull/6457)) -- Bump docker image version to most recent from 3.x.x line ([napari/napari#6458](https://github.com/napari/napari/pull/6458)) -- MAINT Bump magicgui version to v0.7.0 ([napari/napari#6462](https://github.com/napari/napari/pull/6462)) -- Update `certifi`, `hypothesis`, `imageio`, `jsonschema`, `matplotlib`, `numba`, `pillow`, `psygnal`, `pydantic`, `pygments`, `qtconsole`, `rich`, `scipy`, `tensorstore`, `xarray` ([napari/napari#6470](https://github.com/napari/napari/pull/6470)) -- Change default labels layer to uint8. ([napari/napari#6471](https://github.com/napari/napari/pull/6471)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6474](https://github.com/napari/napari/pull/6474)) -- Update `app-model`, `babel`, `coverage`, `dask`, `fsspec`, `hypothesis`, `imageio`, `ipython`, `lxml`, `magicgui`, `pandas`, `pint`, `psutil`, `pydantic`, `pyqt6`, `pytest-qt`, `tensorstore`, `tifffile`, `virtualenv`, `xarray` ([napari/napari#6478](https://github.com/napari/napari/pull/6478)) -- [Maint, CI] Update circleci.yml for artifact location to fix redirector ([napari/napari#6480](https://github.com/napari/napari/pull/6480)) -- Upload test artifacts on failure ([napari/napari#6486](https://github.com/napari/napari/pull/6486)) -- Add testing_extra and optional dependencies when creating constraints ([napari/napari#6487](https://github.com/napari/napari/pull/6487)) -- Add size and ndim to LayerDataProtocol ([napari/napari#6494](https://github.com/napari/napari/pull/6494)) -- Fix scheduled benchmarks to test both last release and main ([napari/napari#6496](https://github.com/napari/napari/pull/6496)) -- Type napari.layers.image helper sub-modules ([napari/napari#6499](https://github.com/napari/napari/pull/6499)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6505](https://github.com/napari/napari/pull/6505)) -- Add import lint back to CI ([napari/napari#6506](https://github.com/napari/napari/pull/6506)) -- Finish typing layers.base helper files ([napari/napari#6508](https://github.com/napari/napari/pull/6508)) -- Add lots of typing to layers.base ([napari/napari#6509](https://github.com/napari/napari/pull/6509)) -- Add `_block_refresh()` to layers ([napari/napari#6525](https://github.com/napari/napari/pull/6525)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6528](https://github.com/napari/napari/pull/6528)) -- Add cache to Transform calculation ([napari/napari#6536](https://github.com/napari/napari/pull/6536)) -- Rescale image data if outside `float32` precision ([napari/napari#6537](https://github.com/napari/napari/pull/6537)) -- MNT: Use `partial` in samples menu to avoid leaking ([napari/napari#6538](https://github.com/napari/napari/pull/6538)) -- Type two sub-modules in napari.layers.utils ([napari/napari#6539](https://github.com/napari/napari/pull/6539)) -- Print a whole stack if throttler is not finished ([napari/napari#6549](https://github.com/napari/napari/pull/6549)) -- Minimal changes for mlx (and jax) compatibility for Image layers ([napari/napari#6553](https://github.com/napari/napari/pull/6553)) -- Improve repo configuration based on scientific python suggestions ([napari/napari#6554](https://github.com/napari/napari/pull/6554)) -- Bump mypy version and fix errors ([napari/napari#6557](https://github.com/napari/napari/pull/6557)) -- ci(dependabot): bump aganders3/headless-gui from 1 to 2 ([napari/napari#6563](https://github.com/napari/napari/pull/6563)) -- ci(dependabot): bump actions/labeler from 4 to 5 ([napari/napari#6565](https://github.com/napari/napari/pull/6565)) -- ci(dependabot): bump actions/setup-python from 4 to 5 ([napari/napari#6567](https://github.com/napari/napari/pull/6567)) -- Fix test in napari_builtins to remove import from conftest ([napari/napari#6568](https://github.com/napari/napari/pull/6568)) -- Update test to work with `app-model==0.2.4` ([napari/napari#6573](https://github.com/napari/napari/pull/6573)) -- Add some more typing to utils.misc ([napari/napari#6574](https://github.com/napari/napari/pull/6574)) -- Fix typing in utils.perf ([napari/napari#6575](https://github.com/napari/napari/pull/6575)) -- Add more typing to utils.events.containers ([napari/napari#6576](https://github.com/napari/napari/pull/6576)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6581](https://github.com/napari/napari/pull/6581)) -- Try fix hanging tests by move `self.stop()` on end of functions that update GUI ([napari/napari#6594](https://github.com/napari/napari/pull/6594)) -- Cache linear matrix decomposition in `Affine` class ([napari/napari#6635](https://github.com/napari/napari/pull/6635)) -- bump actions/download-artifact and actions/upload-artifact from 3 to 4 ([napari/napari#6638](https://github.com/napari/napari/pull/6638)) -- Fix labeler configuration after update to v5 ([napari/napari#6639](https://github.com/napari/napari/pull/6639)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6648](https://github.com/napari/napari/pull/6648)) -- Update `app-model`, `dask`, `hypothesis`, `ipython`, `lxml`, `matplotlib`, `npe2`, `numba`, `numpydoc`, `pandas`, `pillow`, `psygnal`, `pyside2`, `pyside6`, `scipy`, `superqt`, `xarray`, `zarr` ([napari/napari#6655](https://github.com/napari/napari/pull/6655)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6656](https://github.com/napari/napari/pull/6656)) -- Disallow incomplete defs in layers.image ([napari/napari#6659](https://github.com/napari/napari/pull/6659)) -- Check untyped defs in _shapes_models ([napari/napari#6660](https://github.com/napari/napari/pull/6660)) -- Typing improvements to vectors layer ([napari/napari#6661](https://github.com/napari/napari/pull/6661)) -- Exclude problematic surface texture example from tests and docs building ([napari/napari#6663](https://github.com/napari/napari/pull/6663)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6672](https://github.com/napari/napari/pull/6672)) -- Migrate from setup.cfg to pyproject.toml ([napari/napari#6673](https://github.com/napari/napari/pull/6673)) -- Raise exception on TransformChain.simplified when chain is empty ([napari/napari#6674](https://github.com/napari/napari/pull/6674)) -- Add human readable names for Points layer subvisual ([napari/napari#6675](https://github.com/napari/napari/pull/6675)) -- Refactor perf module for better readabiity ([napari/napari#6686](https://github.com/napari/napari/pull/6686)) -- Fix upload of benchmarks ([napari/napari#6697](https://github.com/napari/napari/pull/6697)) -- Bump minimum dask version ([napari/napari#6698](https://github.com/napari/napari/pull/6698)) -- ci(dependabot): bump peter-evans/create-pull-request from 5 to 6 ([napari/napari#6700](https://github.com/napari/napari/pull/6700)) -- ci(dependabot): bump codecov/codecov-action from 3 to 4 ([napari/napari#6701](https://github.com/napari/napari/pull/6701)) -- ci(dependabot): bump aganders3/headless-gui from 1 to 2 ([napari/napari#6702](https://github.com/napari/napari/pull/6702)) -- Disable pyside2 test on windows CI ([napari/napari#6711](https://github.com/napari/napari/pull/6711)) -- Fix `--pre` workflow: missing setup to enable `pyautogui` usage on Linux ([napari/napari#6713](https://github.com/napari/napari/pull/6713)) -- Typing improvements in layers.shapes ([napari/napari#6716](https://github.com/napari/napari/pull/6716)) -- Improve typing in layers.surface ([napari/napari#6717](https://github.com/napari/napari/pull/6717)) -- Create .Xauthority file in conftest.py rather than GHA workflows ([napari/napari#6719](https://github.com/napari/napari/pull/6719)) -- use cross group dependecy in pyproject.toml ([napari/napari#6720](https://github.com/napari/napari/pull/6720)) -- Exclude pyside 2 test on comprehensive workflow ([napari/napari#6721](https://github.com/napari/napari/pull/6721)) -- Move base class for Image and Labels to its own file ([napari/napari#6725](https://github.com/napari/napari/pull/6725)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6737](https://github.com/napari/napari/pull/6737)) -- Drop Python 3.8, add Python 3.12 testing ([napari/napari#6738](https://github.com/napari/napari/pull/6738)) -- Fix Remove lambdas when updating menus from context in `Window` ([napari/napari#6740](https://github.com/napari/napari/pull/6740)) -- Improve widget clean up in `test_widget_hide_destroy` ([napari/napari#6741](https://github.com/napari/napari/pull/6741)) -- Move providers from `_providers.py` to `_qproviders.py` ([napari/napari#6743](https://github.com/napari/napari/pull/6743)) -- [Maint] Exclude pyqt6 6.6.1 on macOS in pyproject.toml ([napari/napari#6748](https://github.com/napari/napari/pull/6748)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6756](https://github.com/napari/napari/pull/6756)) -- [Maint] Put testing dependencies in [dev] as napari[testing] ([napari/napari#6757](https://github.com/napari/napari/pull/6757)) -- bump tifffile dependency and remove deprecation-handling code ([napari/napari#6765](https://github.com/napari/napari/pull/6765)) -- Move Qt view menu actions inside Qt folder ([napari/napari#6767](https://github.com/napari/napari/pull/6767)) -- Improve typing in layers.points ([napari/napari#6770](https://github.com/napari/napari/pull/6770)) -- [Maint] Correct a few more setup.cfg to pyproject.toml ([napari/napari#6771](https://github.com/napari/napari/pull/6771)) -- [maint] drop unused experimental vendor humanize and cachetools ([napari/napari#6772](https://github.com/napari/napari/pull/6772)) -- Switch from black to ruff-format ([napari/napari#6775](https://github.com/napari/napari/pull/6775)) -- numpy version 2.0 compatibility ([napari/napari#6776](https://github.com/napari/napari/pull/6776)) -- Remove app-model CommandId enum in favor of plain strings ([napari/napari#6777](https://github.com/napari/napari/pull/6777)) -- Sort parameters in docstring and `__init__` of `Layer` ([napari/napari#6779](https://github.com/napari/napari/pull/6779)) -- Implement validation of docstrings and kwargs order ([napari/napari#6782](https://github.com/napari/napari/pull/6782)) -- Sort docstring and kwargs of Points layer ([napari/napari#6784](https://github.com/napari/napari/pull/6784)) -- Sort docstring and kwargs of Shapes layer ([napari/napari#6786](https://github.com/napari/napari/pull/6786)) -- Sort docstring and kwargs of Surface layer ([napari/napari#6787](https://github.com/napari/napari/pull/6787)) -- Sort docstring and kwargs of Tracks layer ([napari/napari#6788](https://github.com/napari/napari/pull/6788)) -- improve stack trace of autogenerated `ViewerModel.add_xxxx` methods ([napari/napari#6791](https://github.com/napari/napari/pull/6791)) -- Move _is_moving property from Layer to Shapes ([napari/napari#6795](https://github.com/napari/napari/pull/6795)) -- Fix `ImportError: lxml.html.clean module is now a separate project lxml_html_clean` over test suite (Ubuntu 20.04 and benchmarks) ([napari/napari#6799](https://github.com/napari/napari/pull/6799)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6800](https://github.com/napari/napari/pull/6800)) -- Add more typing to two napari.layers sub-modules ([napari/napari#6803](https://github.com/napari/napari/pull/6803)) -- [maint] Fix deploy_docs.yml for change in napari/docs workflow ([napari/napari#6809](https://github.com/napari/napari/pull/6809)) -- Sort docstring and kwargs of Vectors layer ([napari/napari#6810](https://github.com/napari/napari/pull/6810)) -- Fix some rst syntax in docstrings ([napari/napari#6812](https://github.com/napari/napari/pull/6812)) -- Speedup `napari.layers.utils._test.test_stack_utils.py` ([napari/napari#6813](https://github.com/napari/napari/pull/6813)) -- [Maint] Update CircleCI config.yml for changes in napari/docs Makefile ([napari/napari#6814](https://github.com/napari/napari/pull/6814)) -- Add possibility to test consistency of docstring content between base class and class ([napari/napari#6816](https://github.com/napari/napari/pull/6816)) -- Rename `axes_labels` to `axis_labels` in some internal variables and docstrings ([napari/napari#6817](https://github.com/napari/napari/pull/6817)) -- Add workflow for automatically remove `ready to merge` label ([napari/napari#6818](https://github.com/napari/napari/pull/6818)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6820](https://github.com/napari/napari/pull/6820)) -- Move `_mock_app` fixture to `_testsupport.py` and add it to `make_napari_viewer` ([napari/napari#6823](https://github.com/napari/napari/pull/6823)) -- add test for ScalarField docstring, fix pointed bugs ([napari/napari#6824](https://github.com/napari/napari/pull/6824)) -- Add write permission to `remove_ready_to_merge.yml` workflow ([napari/napari#6825](https://github.com/napari/napari/pull/6825)) -- Bump python from 3.9 to 3.12 in pre-release tests ([napari/napari#6826](https://github.com/napari/napari/pull/6826)) -- fix "Remove ready to merge label" ([napari/napari#6830](https://github.com/napari/napari/pull/6830)) -- Remove "ready to merge" label action part 3 ([napari/napari#6832](https://github.com/napari/napari/pull/6832)) -- ci(dependabot): bump the actions group with 2 updates ([napari/napari#6835](https://github.com/napari/napari/pull/6835)) -- DeprecationWarning in ensure_iterable and is_iterable, Closes #6256 ([napari/napari#6836](https://github.com/napari/napari/pull/6836)) -- Do not crash test on graphviz installation fail ([napari/napari#6837](https://github.com/napari/napari/pull/6837)) -- Update `hypothesis`, `pandas`, `pydantic` ([napari/napari#6838](https://github.com/napari/napari/pull/6838)) -- Allow to use "remove ready to merge lablel" and "edit PR description" callable from another repository ([napari/napari#6839](https://github.com/napari/napari/pull/6839)) -- Add a few ruff lint rules: ASYNC, EXE, FA and LOG ([napari/napari#6840](https://github.com/napari/napari/pull/6840)) -- Add extra field to store plugin display name ([napari/napari#6841](https://github.com/napari/napari/pull/6841)) -- Add pytest-style rules for ruff ([napari/napari#6842](https://github.com/napari/napari/pull/6842)) -- Enable ruff SLOT linting rule ([napari/napari#6843](https://github.com/napari/napari/pull/6843)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6844](https://github.com/napari/napari/pull/6844)) -- Define submenus with their actions, remove submenus.py file ([napari/napari#6848](https://github.com/napari/napari/pull/6848)) -- Add T20 ruff rule (print calls) ([napari/napari#6849](https://github.com/napari/napari/pull/6849)) -- Test dev examples ([napari/napari#6854](https://github.com/napari/napari/pull/6854)) -- Check prereleases testing with macOS + Python 3.12 + PyQt6 ([napari/napari#6858](https://github.com/napari/napari/pull/6858)) -- Update `dask`, `imageio`, `scikit-image`, `tifffile`, `virtualenv` ([napari/napari#6861](https://github.com/napari/napari/pull/6861)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6863](https://github.com/napari/napari/pull/6863)) -- Update `hypothesis`, `pytest`, `virtualenv`, bump mypy constraints and resolve pointed problems. ([napari/napari#6866](https://github.com/napari/napari/pull/6866)) -- Fix compile constraints by compile per operating system and using `uv` ([napari/napari#6873](https://github.com/napari/napari/pull/6873)) -- Fix benchmark reporting ([napari/napari#6877](https://github.com/napari/napari/pull/6877)) -- Move help actions under `_qt` and remove lambdas ([napari/napari#6883](https://github.com/napari/napari/pull/6883)) -- Fix citation cff and add worflow for future validation ([napari/napari#6888](https://github.com/napari/napari/pull/6888)) -- Update `app-model`, `babel`, `coverage`, `dask`, `fsspec`, `hypothesis`, `jsonschema`, `lxml`, `matplotlib`, `psygnal`, `pygments`, `pytest`, `qtconsole`, `superqt`, `tensorstore`, `tifffile`, `tqdm`, `virtualenv`, `xarray`, `zarr` ([napari/napari#6891](https://github.com/napari/napari/pull/6891)) -- Add longer description to pytest fail in `fail_obj_graph` ([napari/napari#6899](https://github.com/napari/napari/pull/6899)) -- Migrate Window menu to app-model ([napari/napari#6905](https://github.com/napari/napari/pull/6905)) -- [Maint] On PRs, dont run benchmarks unless initial tests pass ([napari/napari#6909](https://github.com/napari/napari/pull/6909)) -- Fix `PIP_CONSTRAINT` to not crash python installation on macos arm and python 3.10 ([napari/napari#6911](https://github.com/napari/napari/pull/6911)) -- Migrate Debug menu to app-model ([napari/napari#6915](https://github.com/napari/napari/pull/6915)) -- remove error reporter code ([napari/napari#6923](https://github.com/napari/napari/pull/6923)) -- MNT: Fix layerlist context creation ([napari/napari#6926](https://github.com/napari/napari/pull/6926)) -- Automatically remove run-benchmarks label once benchmarks are executed ([napari/napari#6929](https://github.com/napari/napari/pull/6929)) -- Use `superqt.utils.CodeSyntaxHighlight` instead of `napari._qt.code_syntax_highlight.Pylighter` ([napari/napari#6938](https://github.com/napari/napari/pull/6938)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6939](https://github.com/napari/napari/pull/6939)) -- Add a test for viewer.close_all. ([napari/napari#6942](https://github.com/napari/napari/pull/6942)) -- Add more file menu actions tests ([napari/napari#6943](https://github.com/napari/napari/pull/6943)) -- [Maint] Update docs constraints for new napari-sphinx-theme release ([napari/napari#6947](https://github.com/napari/napari/pull/6947)) -- ci(dependabot): bump docker/login-action from 3.1.0 to 3.2.0 in the actions group ([napari/napari#6951](https://github.com/napari/napari/pull/6951)) -- Update `certifi`, `dask`, `fsspec`, `hypothesis`, `ipython`, `magicgui`, `pint`, `pooch`, `pydantic`, `pytest`, `superqt` ([napari/napari#6953](https://github.com/napari/napari/pull/6953)) -- Add some tests for view menu actions ([napari/napari#6955](https://github.com/napari/napari/pull/6955)) -- [pre-commit.ci] pre-commit autoupdate ([napari/napari#6956](https://github.com/napari/napari/pull/6956)) -- Add some tests for plugins menu actions ([napari/napari#6962](https://github.com/napari/napari/pull/6962)) -- Add some tests for help menu actions ([napari/napari#6963](https://github.com/napari/napari/pull/6963)) -- Add a test for window menu actions ([napari/napari#6972](https://github.com/napari/napari/pull/6972)) -- [maint] Update docker-singularity-publish.yml to run on PR ([napari/napari#6973](https://github.com/napari/napari/pull/6973)) -- More numpy 2.0 related fixes ([napari/napari#6974](https://github.com/napari/napari/pull/6974)) -- Add some tests for debug menu actions and fix validation to create the menu ([napari/napari#6975](https://github.com/napari/napari/pull/6975)) -- Remove redundant `NapariMenu` ([napari/napari#6977](https://github.com/napari/napari/pull/6977)) -- Update `rename_argument` to use `FutureWarning` instead of `DeprecationWarning` ([napari/napari#6980](https://github.com/napari/napari/pull/6980)) -- Add attributes to `DummyTimer` ([napari/napari#6982](https://github.com/napari/napari/pull/6982)) -- Update `test_create_func_renamed` test to use `FutureWarning` instead of `DeprecationWarning` ([napari/napari#6987](https://github.com/napari/napari/pull/6987)) -- restore numpy 2.0 constraints ([napari/napari#6994](https://github.com/napari/napari/pull/6994)) -- Update `dask`, `hypothesis`, `numba`, `pydantic`, `tensorstore`, `vispy`, `xarray` ([napari/napari#6995](https://github.com/napari/napari/pull/6995)) -- Make test log easier to read by removing `-v` from pytest call ([napari/napari#6996](https://github.com/napari/napari/pull/6996)) -- Add tests for viewer scale bar attributes (`colored` and `ticks`) ([napari/napari#7006](https://github.com/napari/napari/pull/7006)) -- Add tox-uv to test environment for speedup installation, fix codecov upload ([napari/napari#7013](https://github.com/napari/napari/pull/7013)) -- Update CircleCI config.yml to not overwrite requirements ([napari/docs#184](https://github.com/napari/docs/pull/184)) -- Update CI actions versions ([napari/docs#213](https://github.com/napari/docs/pull/213)) -- [Maintenance] Use permissions for labeler action (and set v4) ([napari/docs#247](https://github.com/napari/docs/pull/247)) -- [maintenance] Fix missing v in labeler action version ([napari/docs#248](https://github.com/napari/docs/pull/248)) -- Use docs constraints in circleci workflow ([napari/docs#251](https://github.com/napari/docs/pull/251)) -- Add missed pinning dependencies ([napari/docs#260](https://github.com/napari/docs/pull/260)) -- [Maintenance] Update deploy_docs.yml to use constraints ([napari/docs#263](https://github.com/napari/docs/pull/263)) -- [Maintenance] fix path to requirements.txt in deploy_docs workflow ([napari/docs#264](https://github.com/napari/docs/pull/264)) -- Delete vestigial docs/requirements.txt ([napari/docs#270](https://github.com/napari/docs/pull/270)) -- [Maint] use concurrency to cancel in-progress build_docs ([napari/docs#277](https://github.com/napari/docs/pull/277)) -- [Maintenance] Update CIrcleCI redirector circleci.yml to fix artifact path ([napari/docs#278](https://github.com/napari/docs/pull/278)) -- fix napari repo path to constraints ([napari/docs#290](https://github.com/napari/docs/pull/290)) -- Update headless-gui action in build (fix screenshots) ([napari/docs#294](https://github.com/napari/docs/pull/294)) -- Update .gitignore ([napari/docs#300](https://github.com/napari/docs/pull/300)) -- Set `NAPARI_CONFIG` to clean settings ([napari/docs#310](https://github.com/napari/docs/pull/310)) -- Unify docs workflows ([napari/docs#348](https://github.com/napari/docs/pull/348)) -- For this repo, link contributions to documentation contribution guide ([napari/docs#366](https://github.com/napari/docs/pull/366)) -- [Maint] fix the download and deploy part of workflow ([napari/docs#380](https://github.com/napari/docs/pull/380)) -- [Maint] fix build_and_deploy.yml paths ([napari/docs#384](https://github.com/napari/docs/pull/384)) -- fix build_and_deploy.yml take 2 ([napari/docs#385](https://github.com/napari/docs/pull/385)) -- [maint] fix app-model intersphinx link ([napari/docs#388](https://github.com/napari/docs/pull/388)) -- Fix make html-noplot command ([napari/docs#394](https://github.com/napari/docs/pull/394)) -- [Maint] use lxml[html_clean] in requirements.txt ([napari/docs#397](https://github.com/napari/docs/pull/397)) -- Add maintenance workflows from main repo (edit PR description/clean up ready to merge label) ([napari/docs#406](https://github.com/napari/docs/pull/406)) -- Bump napari sphinx theme version ([napari/docs#423](https://github.com/napari/docs/pull/423)) +- Add tests to cover slicing behavior when changing layers and data ([#4819](https://github.com/napari/napari/pull/4819)) +- Add examples to remote sample data & synthetic tests [for async work] ([#4987](https://github.com/napari/napari/pull/4987)) +- Use app model for plugins menu ([#4991](https://github.com/napari/napari/pull/4991)) +- MAINT: Misc unused variables and import. ([#5051](https://github.com/napari/napari/pull/5051)) +- Use same name in yml file and test name. ([#5065](https://github.com/napari/napari/pull/5065)) +- MAINT: Remove QtStateButton, marked for removal in 0.4.14 ([#5066](https://github.com/napari/napari/pull/5066)) +- Update config directory paths for perfmon tools ([#5081](https://github.com/napari/napari/pull/5081)) +- Use app-model keybindings internally ([#5103](https://github.com/napari/napari/pull/5103)) +- Ignore tags directory generated by Sphinx build ([#5104](https://github.com/napari/napari/pull/5104)) +- [pre-commit.ci] pre-commit autoupdate ([#5105](https://github.com/napari/napari/pull/5105)) +- Clarify package installer interface with abstract base class, and Pip/Conda subclasses (continued) ([#5124](https://github.com/napari/napari/pull/5124)) +- MAINT: comment out macos briefcase bundle ([#5144](https://github.com/napari/napari/pull/5144)) +- Use nightly.link to add comment to docs artifacts on PRs ([#5148](https://github.com/napari/napari/pull/5148)) +- Attempt to fix benchmark failing. ([#5175](https://github.com/napari/napari/pull/5175)) +- MAINT: Use positional only to make code a bit more idiomatic. ([#5179](https://github.com/napari/napari/pull/5179)) +- Update vendoring tool to check on matplotlib colormap ([#5181](https://github.com/napari/napari/pull/5181)) +- [pre-commit.ci] pre-commit autoupdate ([#5197](https://github.com/napari/napari/pull/5197)) +- Update plugin dialog design & functionality to add conda install ([#5198](https://github.com/napari/napari/pull/5198)) +- [pre-commit.ci] pre-commit autoupdate ([#5237](https://github.com/napari/napari/pull/5237)) +- Benchmark PR reporting fix ([#5246](https://github.com/napari/napari/pull/5246)) +- Image slice request and response for async slicing ([#5259](https://github.com/napari/napari/pull/5259)) +- Points slice request and response for new async slicing ([#5264](https://github.com/napari/napari/pull/5264)) +- Do not use random shapes in napari_builtins conftest fixtures ([#5287](https://github.com/napari/napari/pull/5287)) +- Add async slicing "force sync" ([#5299](https://github.com/napari/napari/pull/5299)) +- Use plugin display_name for widget parent menu ([#5305](https://github.com/napari/napari/pull/5305)) +- update benchmark ci ([#5309](https://github.com/napari/napari/pull/5309)) +- Fix text label translation ([#5321](https://github.com/napari/napari/pull/5321)) +- Exclude vendored things from absolutify imports ([#5324](https://github.com/napari/napari/pull/5324)) +- Add test coverage for async slicing of labels ([#5325](https://github.com/napari/napari/pull/5325)) +- [pre-commit.ci] pre-commit autoupdate ([#5336](https://github.com/napari/napari/pull/5336)) +- Fully specify cache path in pip install job ([#5357](https://github.com/napari/napari/pull/5357)) +- Add pre commit steep for remove unused imports ([#5359](https://github.com/napari/napari/pull/5359)) +- Add titles and tags to new gallery examples ([#5364](https://github.com/napari/napari/pull/5364)) +- Add GUI test coverage for changes to Labels.show_selected_label ([#5372](https://github.com/napari/napari/pull/5372)) +- [pre-commit.ci] pre-commit autoupdate ([#5375](https://github.com/napari/napari/pull/5375)) +- Calculate text positions for constant strings ([#5387](https://github.com/napari/napari/pull/5387)) +- [pre-commit.ci] pre-commit autoupdate ([#5392](https://github.com/napari/napari/pull/5392)) +- Configure `fail_on_no_env` for `tox-gh-actions` ([#5408](https://github.com/napari/napari/pull/5408)) +- Wait until a blocked test task is actually running ([#5424](https://github.com/napari/napari/pull/5424)) +- Refactor: Qt viewer and VispyCanvas ([#5432](https://github.com/napari/napari/pull/5432)) +- Installation: don't include pyqt5 (from [all]) in [dev] installs ([#5438](https://github.com/napari/napari/pull/5438)) +- Add auto canceling previous test after a new PR commit ([#5453](https://github.com/napari/napari/pull/5453)) +- [pre-commit.ci] pre-commit autoupdate ([#5462](https://github.com/napari/napari/pull/5462)) +- Add digital watermark to napari PNG screenshots ([#5494](https://github.com/napari/napari/pull/5494)) +- MAINT: add time limit for CI. ([#5495](https://github.com/napari/napari/pull/5495)) +- [pre-commit.ci] pre-commit autoupdate ([#5502](https://github.com/napari/napari/pull/5502)) +- [pre-commit.ci] pre-commit autoupdate ([#5518](https://github.com/napari/napari/pull/5518)) +- MAINT: Fix vendoring script and track closest commit. ([#5537](https://github.com/napari/napari/pull/5537)) +- Fix translation checks in CI ([#5562](https://github.com/napari/napari/pull/5562)) +- [pre-commit.ci] pre-commit autoupdate ([#5575](https://github.com/napari/napari/pull/5575)) +- Maint: Add time limit to --pre and comprehensive tests. ([#5597](https://github.com/napari/napari/pull/5597)) +- [pre-commit.ci] pre-commit autoupdate ([#5606](https://github.com/napari/napari/pull/5606)) +- Bugfix: ensure `tool` is set to conda for conda-installed packages ([#5624](https://github.com/napari/napari/pull/5624)) +- FIX: fix translation checking script. ([#5626](https://github.com/napari/napari/pull/5626)) +- [pre-commit.ci] pre-commit autoupdate ([#5627](https://github.com/napari/napari/pull/5627)) +- [maint] Update translation string wizard to offer auto-suggestions ([#5643](https://github.com/napari/napari/pull/5643)) +- Update PR template to front-load issue references ([#5659](https://github.com/napari/napari/pull/5659)) +- MAINT: Move suspected segfaulting test into its own file. ([#5676](https://github.com/napari/napari/pull/5676)) +- Unvendor lazy_loader ([#5681](https://github.com/napari/napari/pull/5681)) +- Add CircleCI to enable docs preview on PRs ([#5714](https://github.com/napari/napari/pull/5714)) +- Check that release labels are added to each PR ([#5733](https://github.com/napari/napari/pull/5733)) +- [MAINT] Remove plugin manager source (move to napari/napari-plugin-manager) ([#5743](https://github.com/napari/napari/pull/5743)) +- [pre-commit.ci] pre-commit autoupdate ([#5765](https://github.com/napari/napari/pull/5765)) +- Use `GITHUB_TOKEN` to create test dependecies PR ([#5774](https://github.com/napari/napari/pull/5774)) +- Use fine grained personal token for test contrains and vendored update ([#5777](https://github.com/napari/napari/pull/5777)) +- Add tests for io utils to save images ([#5780](https://github.com/napari/napari/pull/5780)) +- Use tox-min-req for min-req tests ([#5784](https://github.com/napari/napari/pull/5784)) +- [pre-commit.ci] pre-commit autoupdate ([#5793](https://github.com/napari/napari/pull/5793)) +- Update README to display CZI logo for dark and light GitHub themes ([#5800](https://github.com/napari/napari/pull/5800)) +- Improve discoverability of napari/docs repository. ([#5821](https://github.com/napari/napari/pull/5821)) +- MAINT: Add backend info to CI comprehensive test names ([#5822](https://github.com/napari/napari/pull/5822)) +- Move mypy config to pyproject.toml ([#5825](https://github.com/napari/napari/pull/5825)) +- Fix some typing in colormap utils ([#5832](https://github.com/napari/napari/pull/5832)) +- Improve type annotation for image layer and related ([#5843](https://github.com/napari/napari/pull/5843)) +- Fix typing errors in layers.image ([#5852](https://github.com/napari/napari/pull/5852)) +- Add tests/more tests to widgets with low coverage ([#5864](https://github.com/napari/napari/pull/5864)) +- Fix type checking for layers.vectors ([#5870](https://github.com/napari/napari/pull/5870)) +- Fix type checking in layers.surface ([#5871](https://github.com/napari/napari/pull/5871)) +- test: [Automatic] Constraints upgrades: `dask`, `hypothesis`, `imageio`, `napari-svg`, `pandas`, `pint`, `pydantic`, `pytest-cov`, `tensorstore` ([#5881](https://github.com/napari/napari/pull/5881)) +- Use a nightly pypi index for numpy & scipy, used by the --pre build ([#5882](https://github.com/napari/napari/pull/5882)) +- Remove pycln (redundant with ruff F401 rule) ([#5887](https://github.com/napari/napari/pull/5887)) +- Mock QtConsole in tests ([#5890](https://github.com/napari/napari/pull/5890)) +- Consistent types for vector inputs/outputs in base layer ([#5892](https://github.com/napari/napari/pull/5892)) +- MAINT: Fix more typing and enable mypy on more files. ([#5897](https://github.com/napari/napari/pull/5897)) +- Add __all__ to qthreading and progress ([#5898](https://github.com/napari/napari/pull/5898)) +- Fix typing in translations ([#5900](https://github.com/napari/napari/pull/5900)) +- ENH: Use dict to set `MenuID` in view actions ([#5903](https://github.com/napari/napari/pull/5903)) +- [pre-commit.ci] pre-commit autoupdate ([#5906](https://github.com/napari/napari/pull/5906)) +- [Maint] CI: Use `RUNNER_OS` instead of `PLATFORM` ([#5907](https://github.com/napari/napari/pull/5907)) +- MAINT: GitHub action Timeout increased by 5 minutes ([#5934](https://github.com/napari/napari/pull/5934)) +- Some napari.utils typing fixes ([#5936](https://github.com/napari/napari/pull/5936)) +- Add documentation, enhancement and maintenance fields to PR template ([#5943](https://github.com/napari/napari/pull/5943)) +- Add docs constraints file ([#5988](https://github.com/napari/napari/pull/5988)) +- Fix optional arg typing in napari._qt.containers ([#6004](https://github.com/napari/napari/pull/6004)) +- [pre-commit.ci] pre-commit autoupdate ([#6009](https://github.com/napari/napari/pull/6009)) +- Partially fix translations testing ([#6014](https://github.com/napari/napari/pull/6014)) +- Fix typing in napari.layers.base ([#6028](https://github.com/napari/napari/pull/6028)) +- Add test for `QtToolTipEventFilter` ([#6066](https://github.com/napari/napari/pull/6066)) +- Pin numpy below 2 ([#6073](https://github.com/napari/napari/pull/6073)) +- Fix typing in napari.components.overlays ([#6076](https://github.com/napari/napari/pull/6076)) +- Fix transform_utils typing ([#6082](https://github.com/napari/napari/pull/6082)) +- Task: remove html comments from pr description ([#6086](https://github.com/napari/napari/pull/6086)) +- Reduce noise in PR template ([#6092](https://github.com/napari/napari/pull/6092)) +- Allow contributors to update test constraints using a comment ([#6101](https://github.com/napari/napari/pull/6101)) +- Exclude ... from coverage ([#6103](https://github.com/napari/napari/pull/6103)) +- Pass `QT_QPA_PLATFORM` through tox configuration ([#6110](https://github.com/napari/napari/pull/6110)) +- Remove unused parameters from private function. ([#6131](https://github.com/napari/napari/pull/6131)) +- Fix typing in napari.utils.perf ([#6132](https://github.com/napari/napari/pull/6132)) +- Use faster version of black ([#6133](https://github.com/napari/napari/pull/6133)) +- Fix some typing in napari.utils.events ([#6142](https://github.com/napari/napari/pull/6142)) +- test: [Automatic] Constraints upgrades: `hypothesis`, `magicgui`, `psygnal`, `tensorstore`, `tifffile`, `tqdm`, `virtualenv` ([#6143](https://github.com/napari/napari/pull/6143)) +- Update PR editing script to remove html. ([#6144](https://github.com/napari/napari/pull/6144)) +- Update PR editing action script to remove double empty lines in PR description ([#6150](https://github.com/napari/napari/pull/6150)) +- More typing of napari/utils. ([#6152](https://github.com/napari/napari/pull/6152)) +- Update typing informations in `_app_model/injection/_processors.py` and `components/layerlist.py` ([#6153](https://github.com/napari/napari/pull/6153)) +- Fix types in 'napari.utils.colormaps.categorical_colormap' ([#6154](https://github.com/napari/napari/pull/6154)) +- Fix incorrect types in color_transformations. ([#6155](https://github.com/napari/napari/pull/6155)) +- Refactor test running for reduce CI time ([#6156](https://github.com/napari/napari/pull/6156)) +- Check if milestone and label is added to PR ([#6158](https://github.com/napari/napari/pull/6158)) +- Enable type-checking for `napari.components.experimental`. ([#6166](https://github.com/napari/napari/pull/6166)) +- Fix typing and clearer code in evented-set. ([#6168](https://github.com/napari/napari/pull/6168)) +- Fix and enable typing of selectable lists ([#6169](https://github.com/napari/napari/pull/6169)) +- Add PyQt6 to tox -e mypy ([#6170](https://github.com/napari/napari/pull/6170)) +- Remove an "if" that prevents proper run of "upgrade dependecies" wokflow if triggered by comment ([#6171](https://github.com/napari/napari/pull/6171)) +- Misc typing fixes ([#6172](https://github.com/napari/napari/pull/6172)) +- Fix typo in path to file for upgrade dependencies ([#6173](https://github.com/napari/napari/pull/6173)) +- Update constraints upgrade script to run with appropriate events ([#6175](https://github.com/napari/napari/pull/6175)) +- Add missed "and milestone" ([#6176](https://github.com/napari/napari/pull/6176)) +- Do not clone repository to subdirectory in examples test ([#6181](https://github.com/napari/napari/pull/6181)) +- Add a timeout to some GH actions tests. ([#6187](https://github.com/napari/napari/pull/6187)) +- Fix typing in components.viewer_model ([#6188](https://github.com/napari/napari/pull/6188)) +- DOC Add comment in `_instantiate_dock_widget` ([#6189](https://github.com/napari/napari/pull/6189)) +- Fix some typing in napari.components ([#6203](https://github.com/napari/napari/pull/6203)) +- Allow to use all ViewerModel kwargs in Viewer constructor ([#6209](https://github.com/napari/napari/pull/6209)) +- Fix upgrade dependencies wokflow ([#6211](https://github.com/napari/napari/pull/6211)) +- Replace more np.all( ... = ...) with np.array_equal ([#6213](https://github.com/napari/napari/pull/6213)) +- cleanup np.all(... == ...) from test_points.py ([#6217](https://github.com/napari/napari/pull/6217)) +- remove np.all(... == ...) in test_surface.py ([#6218](https://github.com/napari/napari/pull/6218)) +- [pre-commit.ci] pre-commit autoupdate ([#6221](https://github.com/napari/napari/pull/6221)) +- [pre-commit.ci] pre-commit autoupdate ([#6229](https://github.com/napari/napari/pull/6229)) +- Move `test_file_menu.py` to new app model location ([#6233](https://github.com/napari/napari/pull/6233)) +- More removal of np.all(... == ...) ([#6238](https://github.com/napari/napari/pull/6238)) +- Remove sphinx dependency from defaults dependecies ([#6239](https://github.com/napari/napari/pull/6239)) +- MAINT: Use scipy builtins rotation to compute quaternions. ([#6241](https://github.com/napari/napari/pull/6241)) +- MAINT: Replace `assert np.all(? == ?)` with `assert_array_equal` ([#6244](https://github.com/napari/napari/pull/6244)) +- Fix some typing in napari._vispy ([#6245](https://github.com/napari/napari/pull/6245)) +- Type _WeakCounter ([#6246](https://github.com/napari/napari/pull/6246)) +- Fix typing in napari.utils.theme ([#6247](https://github.com/napari/napari/pull/6247)) +- remove: napari.qt.progress (deprecated in 0.4.11) ([#6252](https://github.com/napari/napari/pull/6252)) +- Restore 'V' keybinding for layer visibiltiy toggle ([#6261](https://github.com/napari/napari/pull/6261)) +- Update `app-model`, `dask`, `fsspec`, `hypothesis`, `imageio`, `ipython`, `jsonschema`, `matplotlib`, `numpy`, `pandas`, `pillow`, `psygnal`, `pytest`, `qtconsole`, `qtpy`, `rich`, `scipy`, `superqt`, `tensorstore`, `tifffile`, `virtualenv`, `xarray`, `zarr` ([#6265](https://github.com/napari/napari/pull/6265)) +- [pre-commit.ci] pre-commit autoupdate ([#6266](https://github.com/napari/napari/pull/6266)) +- Fix nitpicks in `id` and `title` `Action` fields in samples menu ([#6267](https://github.com/napari/napari/pull/6267)) +- ENH Make `_open_preferences_dialog` return `PreferencesDialog` ([#6269](https://github.com/napari/napari/pull/6269)) +- Bump app-model ([#6271](https://github.com/napari/napari/pull/6271)) +- Use `MenuID` in sample menu tests ([#6273](https://github.com/napari/napari/pull/6273)) +- Fix benchmark suite virtualenvs, and disable broken memory benchmarks ([#6278](https://github.com/napari/napari/pull/6278)) +- [pre-commit.ci] pre-commit autoupdate ([#6287](https://github.com/napari/napari/pull/6287)) +- Adding helper function for events and property deprecation ([#6288](https://github.com/napari/napari/pull/6288)) +- Fix labels for dependabot ([#6290](https://github.com/napari/napari/pull/6290)) +- [Maintenance] Fix missing v in the docker-login action version ([#6291](https://github.com/napari/napari/pull/6291)) +- MAINT: Remove auto-author-assign ([#6292](https://github.com/napari/napari/pull/6292)) +- Remove a few of the last instance of np.all(? == ?). ([#6293](https://github.com/napari/napari/pull/6293)) +- Enable memory benchmarks for layers ([#6295](https://github.com/napari/napari/pull/6295)) +- [Maint] Add zarr to optional dependencies in pyproject.toml ([#6297](https://github.com/napari/napari/pull/6297)) +- Set permissions to `allow upgrate_test_contstraints` work ([#6298](https://github.com/napari/napari/pull/6298)) +- Revert "MAINT: Use scipy builtins rotation to compute quaternions. (#6241)" ([#6299](https://github.com/napari/napari/pull/6299)) +- Add pystack to debug hanging linux test ([#6310](https://github.com/napari/napari/pull/6310)) +- [Maintenance] Update bug_report template to add napari --info ([#6312](https://github.com/napari/napari/pull/6312)) +- Use yaml for bug report Issue template ([#6313](https://github.com/napari/napari/pull/6313)) +- Add pre-commit check for basic formattings bugs ([#6315](https://github.com/napari/napari/pull/6315)) +- Add coverage report upload to comprehensive test ([#6316](https://github.com/napari/napari/pull/6316)) +- Update `dask`, `hypothesis`, `numpy`, `pillow`, `pretend`, `psutil`, `pyqt5`, `pyqt6`, `pyside6`, `superqt` ([#6322](https://github.com/napari/napari/pull/6322)) +- [pre-commit.ci] pre-commit autoupdate ([#6323](https://github.com/napari/napari/pull/6323)) +- Fix pre-commit configuration ([#6328](https://github.com/napari/napari/pull/6328)) +- Directly set author of commit in vendored workflow ([#6329](https://github.com/napari/napari/pull/6329)) +- Bump Mypy and some type fixes. ([#6332](https://github.com/napari/napari/pull/6332)) +- Add 'raise' option back to `strict_qt` in `make_napari_viewer` ([#6335](https://github.com/napari/napari/pull/6335)) +- Rename test_strings to validate_strings to stop confusing pytest ([#6338](https://github.com/napari/napari/pull/6338)) +- "no-commit-to-branch" is preventing contribution. ([#6341](https://github.com/napari/napari/pull/6341)) +- MAINT: Refine Mypy config for qtpy. ([#6342](https://github.com/napari/napari/pull/6342)) +- Disable ptrace protection to make pytest-pystack work ([#6343](https://github.com/napari/napari/pull/6343)) +- Fix labeler configuration ([#6344](https://github.com/napari/napari/pull/6344)) +- Add codecov token to reduce propability of fail to upload from main branch ([#6346](https://github.com/napari/napari/pull/6346)) +- Fix upstream deprecation: change `np.alltrue` to `np.array_equiv` ([#6347](https://github.com/napari/napari/pull/6347)) +- Maint: mypy opt-in to opt-out. ([#6352](https://github.com/napari/napari/pull/6352)) +- Full typing of a few more files in napari.utils.* ([#6356](https://github.com/napari/napari/pull/6356)) +- Fix build wheel workflow file name ([#6357](https://github.com/napari/napari/pull/6357)) +- Fix make release workflow ([#6359](https://github.com/napari/napari/pull/6359)) +- Typing: Fully type 5 more files ([#6361](https://github.com/napari/napari/pull/6361)) +- Update examples/clipboard_.py to fix FutureWarning ([#6365](https://github.com/napari/napari/pull/6365)) +- Update `fsspec`, `imageio`, `magicgui`, `napari-console`, `npe2`, `pillow`, `tensorstore`, `xarray` ([#6367](https://github.com/napari/napari/pull/6367)) +- fix `TransformChain.__getitem__` signature ([#6369](https://github.com/napari/napari/pull/6369)) +- Fix permission for JasonEtco/create-an-issue@v2 action ([#6370](https://github.com/napari/napari/pull/6370)) +- Automatic add `maintenance` label to upgrade dependecies workflow ([#6371](https://github.com/napari/napari/pull/6371)) +- [pre-commit.ci] pre-commit autoupdate ([#6373](https://github.com/napari/napari/pull/6373)) +- Ensure the conda bundle workflows have the appropriate permissions ([#6379](https://github.com/napari/napari/pull/6379)) +- Skip redundant pre-commit hooks ([#6389](https://github.com/napari/napari/pull/6389)) +- Update `babel`, `dask`, `pandas`, `pooch`, `pytest`, `qtpy`, `virtualenv` ([#6398](https://github.com/napari/napari/pull/6398)) +- Fix environment variable name name in docs build ([#6401](https://github.com/napari/napari/pull/6401)) +- ci(dependabot): bump actions/checkout from 3 to 4 ([#6403](https://github.com/napari/napari/pull/6403)) +- Fix some weird behaviors when using delete and backspace keys as shortcuts (with or without modifiers) ([#6406](https://github.com/napari/napari/pull/6406)) +- Use ruff to format strings to single quotes. ([#6407](https://github.com/napari/napari/pull/6407)) +- Fix linter warnings in qt_main_window ([#6409](https://github.com/napari/napari/pull/6409)) +- Unify circleci and build_docs workflows across repositories ([#6417](https://github.com/napari/napari/pull/6417)) +- Fix `test_singlescreen_window_settings` to allow it to run locally on multiscreen configuration ([#6422](https://github.com/napari/napari/pull/6422)) +- refactor `napari/_qt/_tests/test_async_slicing.py` to reduce fragility of test ([#6423](https://github.com/napari/napari/pull/6423)) +- Simplify unused parameters of Quaternion functions. ([#6424](https://github.com/napari/napari/pull/6424)) +- Still More typing V ([#6427](https://github.com/napari/napari/pull/6427)) +- Synchronize `rgb` docstring of `ViewerModel.add_image` and `Image` constructor ([#6428](https://github.com/napari/napari/pull/6428)) +- Fix milestone and label checker to be triggered by `milestoned`/`demilestoned` events ([#6430](https://github.com/napari/napari/pull/6430)) +- Refactor Skipped test ([#6431](https://github.com/napari/napari/pull/6431)) +- Update `dask`, `hypothesis`, `numpy`, `pandas`, `tensorstore`, `wrapt` ([#6441](https://github.com/napari/napari/pull/6441)) +- [pre-commit.ci] pre-commit autoupdate ([#6447](https://github.com/napari/napari/pull/6447)) +- add addtional pystack arguments ([#6457](https://github.com/napari/napari/pull/6457)) +- Bump docker image version to most recent from 3.x.x line ([#6458](https://github.com/napari/napari/pull/6458)) +- MAINT Bump magicgui version to v0.7.0 ([#6462](https://github.com/napari/napari/pull/6462)) +- Update `certifi`, `hypothesis`, `imageio`, `jsonschema`, `matplotlib`, `numba`, `pillow`, `psygnal`, `pydantic`, `pygments`, `qtconsole`, `rich`, `scipy`, `tensorstore`, `xarray` ([#6470](https://github.com/napari/napari/pull/6470)) +- Change default labels layer to uint8. ([#6471](https://github.com/napari/napari/pull/6471)) +- [pre-commit.ci] pre-commit autoupdate ([#6474](https://github.com/napari/napari/pull/6474)) +- Update `app-model`, `babel`, `coverage`, `dask`, `fsspec`, `hypothesis`, `imageio`, `ipython`, `lxml`, `magicgui`, `pandas`, `pint`, `psutil`, `pydantic`, `pyqt6`, `pytest-qt`, `tensorstore`, `tifffile`, `virtualenv`, `xarray` ([#6478](https://github.com/napari/napari/pull/6478)) +- [Maint, CI] Update circleci.yml for artifact location to fix redirector ([#6480](https://github.com/napari/napari/pull/6480)) +- Upload test artifacts on failure ([#6486](https://github.com/napari/napari/pull/6486)) +- Add testing_extra and optional dependencies when creating constraints ([#6487](https://github.com/napari/napari/pull/6487)) +- Add size and ndim to LayerDataProtocol ([#6494](https://github.com/napari/napari/pull/6494)) +- Fix scheduled benchmarks to test both last release and main ([#6496](https://github.com/napari/napari/pull/6496)) +- Type napari.layers.image helper sub-modules ([#6499](https://github.com/napari/napari/pull/6499)) +- [pre-commit.ci] pre-commit autoupdate ([#6505](https://github.com/napari/napari/pull/6505)) +- Add import lint back to CI ([#6506](https://github.com/napari/napari/pull/6506)) +- Finish typing layers.base helper files ([#6508](https://github.com/napari/napari/pull/6508)) +- Add lots of typing to layers.base ([#6509](https://github.com/napari/napari/pull/6509)) +- Add `_block_refresh()` to layers ([#6525](https://github.com/napari/napari/pull/6525)) +- [pre-commit.ci] pre-commit autoupdate ([#6528](https://github.com/napari/napari/pull/6528)) +- Add cache to Transform calculation ([#6536](https://github.com/napari/napari/pull/6536)) +- Rescale image data if outside `float32` precision ([#6537](https://github.com/napari/napari/pull/6537)) +- MNT: Use `partial` in samples menu to avoid leaking ([#6538](https://github.com/napari/napari/pull/6538)) +- Type two sub-modules in napari.layers.utils ([#6539](https://github.com/napari/napari/pull/6539)) +- Print a whole stack if throttler is not finished ([#6549](https://github.com/napari/napari/pull/6549)) +- Minimal changes for mlx (and jax) compatibility for Image layers ([#6553](https://github.com/napari/napari/pull/6553)) +- Improve repo configuration based on scientific python suggestions ([#6554](https://github.com/napari/napari/pull/6554)) +- Bump mypy version and fix errors ([#6557](https://github.com/napari/napari/pull/6557)) +- ci(dependabot): bump aganders3/headless-gui from 1 to 2 ([#6563](https://github.com/napari/napari/pull/6563)) +- ci(dependabot): bump actions/labeler from 4 to 5 ([#6565](https://github.com/napari/napari/pull/6565)) +- ci(dependabot): bump actions/setup-python from 4 to 5 ([#6567](https://github.com/napari/napari/pull/6567)) +- Fix test in napari_builtins to remove import from conftest ([#6568](https://github.com/napari/napari/pull/6568)) +- Update test to work with `app-model==0.2.4` ([#6573](https://github.com/napari/napari/pull/6573)) +- Add some more typing to utils.misc ([#6574](https://github.com/napari/napari/pull/6574)) +- Fix typing in utils.perf ([#6575](https://github.com/napari/napari/pull/6575)) +- Add more typing to utils.events.containers ([#6576](https://github.com/napari/napari/pull/6576)) +- [pre-commit.ci] pre-commit autoupdate ([#6581](https://github.com/napari/napari/pull/6581)) +- Try fix hanging tests by move `self.stop()` on end of functions that update GUI ([#6594](https://github.com/napari/napari/pull/6594)) +- Cache linear matrix decomposition in `Affine` class ([#6635](https://github.com/napari/napari/pull/6635)) +- bump actions/download-artifact and actions/upload-artifact from 3 to 4 ([#6638](https://github.com/napari/napari/pull/6638)) +- Fix labeler configuration after update to v5 ([#6639](https://github.com/napari/napari/pull/6639)) +- [pre-commit.ci] pre-commit autoupdate ([#6648](https://github.com/napari/napari/pull/6648)) +- Update `app-model`, `dask`, `hypothesis`, `ipython`, `lxml`, `matplotlib`, `npe2`, `numba`, `numpydoc`, `pandas`, `pillow`, `psygnal`, `pyside2`, `pyside6`, `scipy`, `superqt`, `xarray`, `zarr` ([#6655](https://github.com/napari/napari/pull/6655)) +- [pre-commit.ci] pre-commit autoupdate ([#6656](https://github.com/napari/napari/pull/6656)) +- Disallow incomplete defs in layers.image ([#6659](https://github.com/napari/napari/pull/6659)) +- Check untyped defs in _shapes_models ([#6660](https://github.com/napari/napari/pull/6660)) +- Typing improvements to vectors layer ([#6661](https://github.com/napari/napari/pull/6661)) +- Exclude problematic surface texture example from tests and docs building ([#6663](https://github.com/napari/napari/pull/6663)) +- [pre-commit.ci] pre-commit autoupdate ([#6672](https://github.com/napari/napari/pull/6672)) +- Migrate from setup.cfg to pyproject.toml ([#6673](https://github.com/napari/napari/pull/6673)) +- Raise exception on TransformChain.simplified when chain is empty ([#6674](https://github.com/napari/napari/pull/6674)) +- Add human readable names for Points layer subvisual ([#6675](https://github.com/napari/napari/pull/6675)) +- Refactor perf module for better readabiity ([#6686](https://github.com/napari/napari/pull/6686)) +- Fix upload of benchmarks ([#6697](https://github.com/napari/napari/pull/6697)) +- Bump minimum dask version ([#6698](https://github.com/napari/napari/pull/6698)) +- ci(dependabot): bump peter-evans/create-pull-request from 5 to 6 ([#6700](https://github.com/napari/napari/pull/6700)) +- ci(dependabot): bump codecov/codecov-action from 3 to 4 ([#6701](https://github.com/napari/napari/pull/6701)) +- ci(dependabot): bump aganders3/headless-gui from 1 to 2 ([#6702](https://github.com/napari/napari/pull/6702)) +- Disable pyside2 test on windows CI ([#6711](https://github.com/napari/napari/pull/6711)) +- Fix `--pre` workflow: missing setup to enable `pyautogui` usage on Linux ([#6713](https://github.com/napari/napari/pull/6713)) +- Typing improvements in layers.shapes ([#6716](https://github.com/napari/napari/pull/6716)) +- Improve typing in layers.surface ([#6717](https://github.com/napari/napari/pull/6717)) +- Create .Xauthority file in conftest.py rather than GHA workflows ([#6719](https://github.com/napari/napari/pull/6719)) +- use cross group dependecy in pyproject.toml ([#6720](https://github.com/napari/napari/pull/6720)) +- Exclude pyside 2 test on comprehensive workflow ([#6721](https://github.com/napari/napari/pull/6721)) +- Move base class for Image and Labels to its own file ([#6725](https://github.com/napari/napari/pull/6725)) +- [pre-commit.ci] pre-commit autoupdate ([#6737](https://github.com/napari/napari/pull/6737)) +- Drop Python 3.8, add Python 3.12 testing ([#6738](https://github.com/napari/napari/pull/6738)) +- Fix Remove lambdas when updating menus from context in `Window` ([#6740](https://github.com/napari/napari/pull/6740)) +- Improve widget clean up in `test_widget_hide_destroy` ([#6741](https://github.com/napari/napari/pull/6741)) +- Move providers from `_providers.py` to `_qproviders.py` ([#6743](https://github.com/napari/napari/pull/6743)) +- [Maint] Exclude pyqt6 6.6.1 on macOS in pyproject.toml ([#6748](https://github.com/napari/napari/pull/6748)) +- [pre-commit.ci] pre-commit autoupdate ([#6756](https://github.com/napari/napari/pull/6756)) +- [Maint] Put testing dependencies in [dev] as napari[testing] ([#6757](https://github.com/napari/napari/pull/6757)) +- bump tifffile dependency and remove deprecation-handling code ([#6765](https://github.com/napari/napari/pull/6765)) +- Move Qt view menu actions inside Qt folder ([#6767](https://github.com/napari/napari/pull/6767)) +- Improve typing in layers.points ([#6770](https://github.com/napari/napari/pull/6770)) +- [Maint] Correct a few more setup.cfg to pyproject.toml ([#6771](https://github.com/napari/napari/pull/6771)) +- [maint] drop unused experimental vendor humanize and cachetools ([#6772](https://github.com/napari/napari/pull/6772)) +- Switch from black to ruff-format ([#6775](https://github.com/napari/napari/pull/6775)) +- numpy version 2.0 compatibility ([#6776](https://github.com/napari/napari/pull/6776)) +- Remove app-model CommandId enum in favor of plain strings ([#6777](https://github.com/napari/napari/pull/6777)) +- Sort parameters in docstring and `__init__` of `Layer` ([#6779](https://github.com/napari/napari/pull/6779)) +- Implement validation of docstrings and kwargs order ([#6782](https://github.com/napari/napari/pull/6782)) +- Sort docstring and kwargs of Points layer ([#6784](https://github.com/napari/napari/pull/6784)) +- Sort docstring and kwargs of Shapes layer ([#6786](https://github.com/napari/napari/pull/6786)) +- Sort docstring and kwargs of Surface layer ([#6787](https://github.com/napari/napari/pull/6787)) +- Sort docstring and kwargs of Tracks layer ([#6788](https://github.com/napari/napari/pull/6788)) +- improve stack trace of autogenerated `ViewerModel.add_xxxx` methods ([#6791](https://github.com/napari/napari/pull/6791)) +- Move _is_moving property from Layer to Shapes ([#6795](https://github.com/napari/napari/pull/6795)) +- Fix `ImportError: lxml.html.clean module is now a separate project lxml_html_clean` over test suite (Ubuntu 20.04 and benchmarks) ([#6799](https://github.com/napari/napari/pull/6799)) +- [pre-commit.ci] pre-commit autoupdate ([#6800](https://github.com/napari/napari/pull/6800)) +- Add more typing to two napari.layers sub-modules ([#6803](https://github.com/napari/napari/pull/6803)) +- [maint] Fix deploy_docs.yml for change in napari/docs workflow ([#6809](https://github.com/napari/napari/pull/6809)) +- Sort docstring and kwargs of Vectors layer ([#6810](https://github.com/napari/napari/pull/6810)) +- Fix some rst syntax in docstrings ([#6812](https://github.com/napari/napari/pull/6812)) +- Speedup `napari.layers.utils._test.test_stack_utils.py` ([#6813](https://github.com/napari/napari/pull/6813)) +- [Maint] Update CircleCI config.yml for changes in napari/docs Makefile ([#6814](https://github.com/napari/napari/pull/6814)) +- Add possibility to test consistency of docstring content between base class and class ([#6816](https://github.com/napari/napari/pull/6816)) +- Rename `axes_labels` to `axis_labels` in some internal variables and docstrings ([#6817](https://github.com/napari/napari/pull/6817)) +- Add workflow for automatically remove `ready to merge` label ([#6818](https://github.com/napari/napari/pull/6818)) +- [pre-commit.ci] pre-commit autoupdate ([#6820](https://github.com/napari/napari/pull/6820)) +- Move `_mock_app` fixture to `_testsupport.py` and add it to `make_napari_viewer` ([#6823](https://github.com/napari/napari/pull/6823)) +- add test for ScalarField docstring, fix pointed bugs ([#6824](https://github.com/napari/napari/pull/6824)) +- Add write permission to `remove_ready_to_merge.yml` workflow ([#6825](https://github.com/napari/napari/pull/6825)) +- Bump python from 3.9 to 3.12 in pre-release tests ([#6826](https://github.com/napari/napari/pull/6826)) +- fix "Remove ready to merge label" ([#6830](https://github.com/napari/napari/pull/6830)) +- Remove "ready to merge" label action part 3 ([#6832](https://github.com/napari/napari/pull/6832)) +- ci(dependabot): bump the actions group with 2 updates ([#6835](https://github.com/napari/napari/pull/6835)) +- DeprecationWarning in ensure_iterable and is_iterable, Closes #6256 ([#6836](https://github.com/napari/napari/pull/6836)) +- Do not crash test on graphviz installation fail ([#6837](https://github.com/napari/napari/pull/6837)) +- Update `hypothesis`, `pandas`, `pydantic` ([#6838](https://github.com/napari/napari/pull/6838)) +- Allow to use "remove ready to merge lablel" and "edit PR description" callable from another repository ([#6839](https://github.com/napari/napari/pull/6839)) +- Add a few ruff lint rules: ASYNC, EXE, FA and LOG ([#6840](https://github.com/napari/napari/pull/6840)) +- Add extra field to store plugin display name ([#6841](https://github.com/napari/napari/pull/6841)) +- Add pytest-style rules for ruff ([#6842](https://github.com/napari/napari/pull/6842)) +- Enable ruff SLOT linting rule ([#6843](https://github.com/napari/napari/pull/6843)) +- [pre-commit.ci] pre-commit autoupdate ([#6844](https://github.com/napari/napari/pull/6844)) +- Define submenus with their actions, remove submenus.py file ([#6848](https://github.com/napari/napari/pull/6848)) +- Add T20 ruff rule (print calls) ([#6849](https://github.com/napari/napari/pull/6849)) +- Test dev examples ([#6854](https://github.com/napari/napari/pull/6854)) +- Check prereleases testing with macOS + Python 3.12 + PyQt6 ([#6858](https://github.com/napari/napari/pull/6858)) +- Update `dask`, `imageio`, `scikit-image`, `tifffile`, `virtualenv` ([#6861](https://github.com/napari/napari/pull/6861)) +- [pre-commit.ci] pre-commit autoupdate ([#6863](https://github.com/napari/napari/pull/6863)) +- Update `hypothesis`, `pytest`, `virtualenv`, bump mypy constraints and resolve pointed problems. ([#6866](https://github.com/napari/napari/pull/6866)) +- Fix compile constraints by compile per operating system and using `uv` ([#6873](https://github.com/napari/napari/pull/6873)) +- Fix benchmark reporting ([#6877](https://github.com/napari/napari/pull/6877)) +- Move help actions under `_qt` and remove lambdas ([#6883](https://github.com/napari/napari/pull/6883)) +- Fix citation cff and add worflow for future validation ([#6888](https://github.com/napari/napari/pull/6888)) +- Update `app-model`, `babel`, `coverage`, `dask`, `fsspec`, `hypothesis`, `jsonschema`, `lxml`, `matplotlib`, `psygnal`, `pygments`, `pytest`, `qtconsole`, `superqt`, `tensorstore`, `tifffile`, `tqdm`, `virtualenv`, `xarray`, `zarr` ([#6891](https://github.com/napari/napari/pull/6891)) +- Add longer description to pytest fail in `fail_obj_graph` ([#6899](https://github.com/napari/napari/pull/6899)) +- Migrate Window menu to app-model ([#6905](https://github.com/napari/napari/pull/6905)) +- [Maint] On PRs, dont run benchmarks unless initial tests pass ([#6909](https://github.com/napari/napari/pull/6909)) +- Fix `PIP_CONSTRAINT` to not crash python installation on macos arm and python 3.10 ([#6911](https://github.com/napari/napari/pull/6911)) +- Migrate Debug menu to app-model ([#6915](https://github.com/napari/napari/pull/6915)) +- remove error reporter code ([#6923](https://github.com/napari/napari/pull/6923)) +- MNT: Fix layerlist context creation ([#6926](https://github.com/napari/napari/pull/6926)) +- Automatically remove run-benchmarks label once benchmarks are executed ([#6929](https://github.com/napari/napari/pull/6929)) +- Use `superqt.utils.CodeSyntaxHighlight` instead of `napari._qt.code_syntax_highlight.Pylighter` ([#6938](https://github.com/napari/napari/pull/6938)) +- [pre-commit.ci] pre-commit autoupdate ([#6939](https://github.com/napari/napari/pull/6939)) +- Add a test for viewer.close_all. ([#6942](https://github.com/napari/napari/pull/6942)) +- Add more file menu actions tests ([#6943](https://github.com/napari/napari/pull/6943)) +- [Maint] Update docs constraints for new napari-sphinx-theme release ([#6947](https://github.com/napari/napari/pull/6947)) +- ci(dependabot): bump docker/login-action from 3.1.0 to 3.2.0 in the actions group ([#6951](https://github.com/napari/napari/pull/6951)) +- Update `certifi`, `dask`, `fsspec`, `hypothesis`, `ipython`, `magicgui`, `pint`, `pooch`, `pydantic`, `pytest`, `superqt` ([#6953](https://github.com/napari/napari/pull/6953)) +- Add some tests for view menu actions ([#6955](https://github.com/napari/napari/pull/6955)) +- [pre-commit.ci] pre-commit autoupdate ([#6956](https://github.com/napari/napari/pull/6956)) +- Add some tests for plugins menu actions ([#6962](https://github.com/napari/napari/pull/6962)) +- Add some tests for help menu actions ([#6963](https://github.com/napari/napari/pull/6963)) +- Add a test for window menu actions ([#6972](https://github.com/napari/napari/pull/6972)) +- [maint] Update docker-singularity-publish.yml to run on PR ([#6973](https://github.com/napari/napari/pull/6973)) +- More numpy 2.0 related fixes ([#6974](https://github.com/napari/napari/pull/6974)) +- Add some tests for debug menu actions and fix validation to create the menu ([#6975](https://github.com/napari/napari/pull/6975)) +- Remove redundant `NapariMenu` ([#6977](https://github.com/napari/napari/pull/6977)) +- Update `rename_argument` to use `FutureWarning` instead of `DeprecationWarning` ([#6980](https://github.com/napari/napari/pull/6980)) +- Add attributes to `DummyTimer` ([#6982](https://github.com/napari/napari/pull/6982)) +- Update `test_create_func_renamed` test to use `FutureWarning` instead of `DeprecationWarning` ([#6987](https://github.com/napari/napari/pull/6987)) +- restore numpy 2.0 constraints ([#6994](https://github.com/napari/napari/pull/6994)) +- Update `dask`, `hypothesis`, `numba`, `pydantic`, `tensorstore`, `vispy`, `xarray` ([#6995](https://github.com/napari/napari/pull/6995)) +- Make test log easier to read by removing `-v` from pytest call ([#6996](https://github.com/napari/napari/pull/6996)) +- Add tests for viewer scale bar attributes (`colored` and `ticks`) ([#7006](https://github.com/napari/napari/pull/7006)) +- Add tox-uv to test environment for speedup installation, fix codecov upload ([#7013](https://github.com/napari/napari/pull/7013)) +- Update CircleCI config.yml to not overwrite requirements ([docs#184](https://github.com/napari/docs/pull/184)) +- Update CI actions versions ([docs#213](https://github.com/napari/docs/pull/213)) +- [Maintenance] Use permissions for labeler action (and set v4) ([docs#247](https://github.com/napari/docs/pull/247)) +- [maintenance] Fix missing v in labeler action version ([docs#248](https://github.com/napari/docs/pull/248)) +- Use docs constraints in circleci workflow ([docs#251](https://github.com/napari/docs/pull/251)) +- Add missed pinning dependencies ([docs#260](https://github.com/napari/docs/pull/260)) +- [Maintenance] Update deploy_docs.yml to use constraints ([docs#263](https://github.com/napari/docs/pull/263)) +- [Maintenance] fix path to requirements.txt in deploy_docs workflow ([docs#264](https://github.com/napari/docs/pull/264)) +- Delete vestigial docs/requirements.txt ([docs#270](https://github.com/napari/docs/pull/270)) +- [Maint] use concurrency to cancel in-progress build_docs ([docs#277](https://github.com/napari/docs/pull/277)) +- [Maintenance] Update CIrcleCI redirector circleci.yml to fix artifact path ([docs#278](https://github.com/napari/docs/pull/278)) +- fix napari repo path to constraints ([docs#290](https://github.com/napari/docs/pull/290)) +- Update headless-gui action in build (fix screenshots) ([docs#294](https://github.com/napari/docs/pull/294)) +- Update .gitignore ([docs#300](https://github.com/napari/docs/pull/300)) +- Set `NAPARI_CONFIG` to clean settings ([docs#310](https://github.com/napari/docs/pull/310)) +- Unify docs workflows ([docs#348](https://github.com/napari/docs/pull/348)) +- For this repo, link contributions to documentation contribution guide ([docs#366](https://github.com/napari/docs/pull/366)) +- [Maint] fix the download and deploy part of workflow ([docs#380](https://github.com/napari/docs/pull/380)) +- [Maint] fix build_and_deploy.yml paths ([docs#384](https://github.com/napari/docs/pull/384)) +- fix build_and_deploy.yml take 2 ([docs#385](https://github.com/napari/docs/pull/385)) +- [maint] fix app-model intersphinx link ([docs#388](https://github.com/napari/docs/pull/388)) +- Fix make html-noplot command ([docs#394](https://github.com/napari/docs/pull/394)) +- [Maint] use lxml[html_clean] in requirements.txt ([docs#397](https://github.com/napari/docs/pull/397)) +- Add maintenance workflows from main repo (edit PR description/clean up ready to merge label) ([docs#406](https://github.com/napari/docs/pull/406)) +- Bump napari sphinx theme version ([docs#423](https://github.com/napari/docs/pull/423)) ## 43 authors added to this release (alphabetical)