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Makefile_header.mk
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#------------------------------------------------------------------------------
# GEOS-Chem Global Chemical Transport Model #
#------------------------------------------------------------------------------
#BOP
#
# !IROUTINE: Makefile_header.mk
#
# !DESCRIPTION: This sub-makefile defines the variables which specify
# compilation options for the different supported compiler/platform
# combinations. Also, the default makefile compilation rules are specified
# here.
#\\
#\\
# !REMARKS:
# To build the programs, call "make" with the following syntax:
# .
# make -jN TARGET REQUIRED-FLAGS [ OPTIONAL-FLAGS ]
#
# To display a complete list of options, type "make help".
# .
# The following variables are exported to the main-level Makefile:
# .
# Variable Description
# -------- -----------
# CC Contains the default C compilation commands (for PGI only)
# F90 Contains the Fortran compilation commands
# FREEFORM Contains the command to force F90 "free format" compilation
# LD Contains the command to link to libraries & make executable
# LINK Contains the commands to link to GEOS-Chem built libraries
# R8 Contains the command to force REAL -> REAL*8
# SHELL Contains the default Unix shell to use when building code
# NCL Contains the default netCDF library link commands
# .
# FFLAGS is a local variable that is not returned to the "outside world",
# but is only used locally. COMPILER, HDF5, and OMP are all input via the
# command line or via environment variables.
# .
# NOTE: We now use SHELL :=/bin/bash as the default Unix shell. This allows
# us to extend the Makefile ifeq statements so that we can test for more than
# one string. The following example is used to ensure that the met field name
# selected by the user is case-insensitive:
#
# # %%%%% GEOS-FP %%%%%
# REGEXP :=(^[Gg][Ee][Oo][Ss][Ff][Pp])|(^[Gg][Ee][Oo][Ss].[Ff][Pp])
# ifeq ($(shell [[ "$(MET)" =~ $(REGEXP) ]] && echo true),true)
# USER_DEFS += -DGEOS_FP
# endif
# .
# The [[ ]] in bash is an evaluation. The above ifeq statement uses regular
# expressions to test if the MET variable matches the string "GEOS" (case-
# insensitive) and either "FP" or "any character and then a FP". This will
# return true (via the "echo true" statement) for combinations like "GEOS-FP",
# "geosfp", "Geos-FP", "GeOs.FP", etc. This is a robust way of evaluating
# the user's input, and will make errors less likely.
#
# !REVISION HISTORY:
# 16 Sep 2009 - R. Yantosca - Initial version
# 22 Sep 2009 - R. Yantosca - Bug fix, added -I$(HDR) to F90 compilation lines
# 24 Sep 2009 - R. Yantosca - added NONUMA option for PGI compiler
# 07 Oct 2009 - R. Yantosca - Replaced .SUFFIXES section w/ pattern rules
# 19 Nov 2009 - R. Yantosca - Now use OMP variable to determine whether to
# turn on OpenMP parallelization options
# 23 Nov 2009 - R. Yantosca - Now use -module $(MOD) instead of -I$(MOD) to
# specify the directory for *.mod files on both
# IFORT and PGI compilers.
# 23 Nov 2009 - R. Yantosca - Now use -moddir=$(MOD) and -M$(MOD) instead of
# -I$(MOD) to specify the directory for *.mod
# files on the SunStudio compiler.
# 23 Nov 2009 - R. Yantosca - Change DEBUG to allow for new version of
# Totalview which doesn't choke when debugging
# parallel code (Totalview 8.6.1-1)
# 02 Dec 2009 - R. Yantosca - Added SUN32 switch for building 32-bit
# executbable on the SunStudio compiler
# 11 Dec 2009 - R. Yantosca - Now define SHELL here and export to other
# Makefiles, so as to have a single place where
# the Unix shell name is defined.
# 21 Dec 2009 - R. Yantosca - Add H5I and H5L variables to specify the
# HDF5 library and include paths. Also set
# the default to not link to the HDF5 libraries.
# 21 Dec 2009 - R. Yantosca - Now pass LINK back to the outside world, so
# that the Makefile that builds the executable
# can reference it.
# 19 Jan 2010 - R. Yantosca - Minor fix, add -m64 if SUN32 is not defined.
# 25 Jan 2010 - R. Yantosca - Now add -DTOMAS to FFLAGS if necessary
# 28 Jan 2010 - C. Carouge - Add -lIsorropia to LINK, for ISORROPIA II
# 16 Feb 2011 - R. Yantosca - Now add -DAPM to FFLAGS if necessary
# 25 Aug 2011 - R. Yantosca - Add "-fp-model source" to FFLAGS for IFORT
# compiler. This will prevent aggressive
# optimizations from changing numerical results.
# 25 Aug 2011 - R. Yantosca - Add -CU (check for uninit'd variables) to
# FFLAGS when using IFORT w/ the DEBUG option.
# 26 Aug 2011 - R. Yantosca - Allow for deactivation of the "-fp-model source"
# option by using the PRECISE=no env variable
# 24 Jan 2012 - R. Yantosca - If NETCDF=yes, GEOS-Chem will link and include
# to the netCDF dir paths that are specified
# 24 Jan 2012 - R. Yantosca - Now use := for makefile assignment statements
# 10 Feb 2012 - R. Yantosca - When compiling with NETCDF=yes or HDF5=yes,
# we must also add the flags -mcmodel=medium
# -i-dynamic to FFLAGS in order to avoid memory
# errors (for IFORT only)
# 10 Feb 2012 - R. Yantosca - Remove -CU from the DEBUG option (IFORT only)
# 19 Mar 2012 - R. Yantosca - Add optional NO_ISO switch, which will turn off
# the ISORROPIA ATE package for testing
# 05 Apr 2012 - R. Yantosca - Now assume netCDF is always used
# 05 Apr 2012 - R. Yantosca - Change BL_INC_NETCDF to INC_NETCDF
# 05 Apr 2012 - R. Yantosca - Change BL_INC_HDF5 to INC_HDF5
# 05 Apr 2012 - R. Yantosca - Change BL_LIB_NETCDF to LIB_NETCDF
# 05 Apr 2012 - R. Yantosca - Change BL_LIB_HDF5 to LIB_HDF5
# 30 Apr 2012 - R. Yantosca - Add NETCDF3=[yes|no] makefile option
# 30 Apr 2012 - R. Yantosca - Use separate netCDF link and include paths
# for netCDF3 and for netCDF4
# 30 Apr 2012 - R. Yantosca - Also add -mcmodel=medium flag for PGI compiler
# 09 May 2012 - R. Yantosca - Now try to get the proper linking sequence
# for netCDF etc w/ nf-config and nc-config.
# 11 May 2012 - R. Yantosca - Now export NCL (netCDF linking sequence)
# 17 Aug 2012 - R. Yantosca - Now add RRTMG=yes option for RRTMG rad transfer
# 07 Sep 2012 - R. Yantosca - Now add OPT variable to set global opt levels
# 07 Sep 2012 - R. Yantosca - Also set TRACEBACK for PGI compiler
# 17 Apr 2013 - R. Yantosca - Add switch to set -DKPP_SOLVE_ALWAYS, which
# will force KPP to get past nonconvergences
# 25 Feb 2013 - S. Farina - Add flag for TOMAS40
# 22 Apr 2013 - R. Yantosca - TOMAS40=yes option now sets -DTOMAS -DTOMAS40
# 28 Apr 2013 - S. Farina - Add flags for TOMAS15 and TOMAS12
# 13 Aug 2013 - R. Yantosca - Removed "define.h"; now set all GEOS-Chem
# user options via the Make command
# 14 Aug 2013 - R. Yantosca - Now use regular expressions to test the
# validity of command-line inputs
# 21 Aug 2013 - R. Yantosca - Improved error checking for command line inputs
# 26 Aug 2013 - R. Yantosca - Add -debug all as an IFORT debugging option
# 16 Sep 2013 - R. Yantosca - Now set GIGC Cpp switches first. This allows
# us to skip the GRID setting if we are using
# EXTERNAL_GRID=yes or EXTERNAL_FORCING=yes.
# 18 Sep 2013 - M. Long - Add edits for HPC Grid-Indpendent GEOS-Chem
# 26 Sep 2013 - R. Yantosca - MET=geosfp now sets Cpp switch w/ -DGEOS_FP
# 07 Nov 2013 - R. Yantosca - NEST=se to now sets CPP switch w/ -DNESTED_SE
# 08 Nov 2013 - R. Yantosca - Add FPEX flag to avoid conflicting with the
# ESMF/MAPL environment variable FPE
# 24 Feb 2014 - R. Yantosca - Add UCX=yes flag for invoking UCX strat chem
# 18 Mar 2014 - R. Yantosca - Now add TAU_PROF=y flag to invoke TAU profiler
# 19 Mar 2014 - R. Yantosca - Move library link commands after the sections
# that set the C-preprocessor switches
# 19 Mar 2014 - R. Yantosca - Restore GTMM compilation funcitonality
# 19 Mar 2014 - R. Yantosca - Add more visible comment section dividers
# 20 Mar 2014 - R. Yantosca - Bug fix: "+= -DDEBUG" instead of ":= -DDEBUG"
# 09 Jul 2014 - R. Yantosca - Now don't require MET or GRID if target is
# srcdoc, utildoc, gtmmdoc, makedoc, or hemcodoc
# 21 Jul 2014 - R. Yantosca - Update build sequence
# 03 Oct 2014 - R. Yantosca - Now turn on NO_REDUCED=y for hpc target
# 03 Oct 2014 - R. Yantosca - Now compatible with netCDF 4.1.1 or 4.2+
# 17 Oct 2014 - R. Yantosca - Don't require MET or GRID to remove ESMF etc.
# 05 Nov 2014 - R. Yantosca - Will compile w/ 8-byte precision by default
# 14 Nov 2014 - R. Yantosca - Further updates for hpc compilation
# 21 Nov 2014 - R. Yantosca - Add special compilation command for ISORROPIA
# 21 Nov 2014 - R. Yantosca - Add cosmetic changes and indentation
# 06 Jan 2015 - R. Yantosca - Add two-way nesting options from Y. Y. Yan
# 09 Jan 2015 - M. Sulprizio- Now properly link to the RRTMG directory
# 13 Jan 2015 - R. Yantosca - Add fix for GEOS-Chem-Libraries library path
# 08 Apr 2015 - R. Yantosca - Bug fix: set RRTMG=yes if it passes the regexp
# 10 Apr 2015 - R. Yantosca - Export RRTMG_NEEDED var to be used elsewhere
# 10 Apr 2015 - R. Yantosca - Bug fix: -l rad should be -lrad in link var
# 12 May 2015 - R. Yantosca - Bug fix for PGI compiler: remove extra "-"
# in front of $(NC_INC_CMD) in the PGI section
# 12 May 2015 - R. Yantosca - Now use GC_BIN, GC_INCLUDE to point to the
# netCDF library paths and GC_F_BIN, GC_F_INCLUDE
# to point to netCDF-Fortran library paths.
# (In some cases, these are the same).
# 20 May 2015 - R. Yantosca - Test if GC_F_BIN and GC_F_INCLUDE are defined
# as env variables before trying to use them.
# 29 May 2015 - R. Yantosca - Now set KPP_CHEM for KPP. We can't redefine
# the CHEM variable because it is an env var.
# 04 Jun 2015 - R. Yantosca - Now use RRTMG_NO_CLEAN=y or RRTMG_NOCLEAN=y to
# removing RRTMG objects, modules, and libraries.
# 04 Jun 2015 - R. Yantosca - Bug fix: don't turn on UCX except for CHEM=UCX
# 15 Jun 2015 - R. Yantosca - Now define the HEMCO standalone link command
# separately from the GEOS-Chem link command
# 07 Jul 2015 - M. Sulprizio- Add option for CHEM=SOA_SVPOA
# 17 Jul 2015 - E. Lundgren - Remove BSTATIC option when picking pgi options
# for debug run or regular run
# 30 Jul 2015 - M. Yannetti - Added TIMERS.
# 03 Aug 2015 - M. Sulprizio- NEST=cu to now sets CPP switch w/ -DNESTED_CU for
# custom nested grids
# 11 Aug 2015 - R. Yantosca - Add MERRA2 as a met field option
# 24 Aug 2015 - R. Yantosca - Bug fix: Add missing | when testing USER_DEFS
# 07 Dec 2015 - R. Yantosca - Add "realclean_except_rrtmg" target that
# replaces the RRTMG_CLEAN variabe
# 10 Feb 2016 - E. Lundgren - Add BPCH restart file input and output switches
# 11 Feb 2016 - E. Lundgren - Change BPCH to BPCH_DIAG, NETCDF to NC_DIAG
# 12 Jul 2016 - E. Lundgren - Remove binary punch restart file option
# 19 Jul 2016 - R. Yantosca - Add more flags for enabling experimental code
# 20 Sep 2016 - M. Sulprizio- Remove NEST=se option. This grid was never fully
# implemented.
# 12 Dec 2016 - R. Yantosca - Allow gfortran etc. to compile with TAU_PROF=y
# 13 Dec 2016 - R. Yantosca - Add GPROF=y to compile for GNU profiler gprof
# 01 Mar 2017 - R. Yantosca - Bug fix: Make sure NO_REDUCED=no works
# 01 Mar 2017 - R. Yantosca - Set -DNC_HAS_COMPRESSION if the netCDF library
# can write compressed data to disk
# 07 Mar 2017 - R. Yantosca - Replace makefile variable COMPILER with
# COMPILER_FAMILY; also works if FC=mpif90
# 08 May 2017 - R. Yantosca - Add minor fixes to avoid Perl bareword errors
# 23 May 2017 - R. Yantosca - use -dumpversion to get the Gfortran version #
# 24 Aug 2017 - M. Sulprizio- Remove support for GCAP, GEOS-4, GEOS-5 and MERRA
# 03 Jan 2018 - M. Sulprizio- Remove UCX flag. We now solely use Input_Opt%LUCX
# throughout GEOS-Chem.
# 07 Aug 2018 - R. Yantosca - For now, don't compile TOMAS/ APM when NC_DIAG=y
# 21 Aug 2018 - R. Yantosca - Simplify testing for netCDF-Fortran
# 23 Aug 2018 - H.P. Lin - Add NO_EXE=y to inhibit "geos" executable build
# and build libGeosCore.a instead for coupled
# models driving GEOS-Chem externally (by calling
# its libraries)
# 28 Aug 2018 - M. Sulprizio- Export EXE_NEEDED to be used in GeosCore/Makefile
# 06 Jan 2019 - M. Sulprizio- Remove Met, Grid, and Nest options. They are now
# specified in input.geos as part of FlexGrid
# 20 Feb 2019 - M. Sulprizio- Remove NC_DIAG switch, it should always be used
#EOP
#------------------------------------------------------------------------------
#BOC
###############################################################################
### ###
### Set the default Unix shell and some error message variables ###
### ###
###############################################################################
# Set default shell to bash, for use with the Makefile conditionals
SHELL :=/bin/bash
# Error message for bad COMPILER input
ERR_CMPLR :="Unknown Fortran compiler! Must be one of ifort, gfortran, pgfortran|pgi|pgf90, or mpifort|mpif90. Check the FC environment variable in your .bashrc or .cshrc file."
# Error message for unknown compiler/OS combintation
ERR_OSCOMP :="Makefile_header.mk not set up for this compiler/OS combination"
# Error message for bad two-way coupled model input (yanyy,6/18/14)
ERR_COUPLECH :="Select a coupled grid for China/SE Asia: COUPLECH=2x25ch, COUPLECH=4x5ch"
ERR_COUPLENA :="Select a coupled grid for North America: COUPLENA=2x25na, COUPLENA=4x5na"
ERR_COUPLEEU :="Select a coupled grid for Europe : COUPLEEU=2x25eu, COUPLEEU=4x5eu"
ERR_COUPLE :="Select a coupled choice: COUPLE=yes"
# Error message for bad GIGC config
ERR_GIGC :="Unable to find the GIGC configuration file. Have you downloaded the GIGC?"
###############################################################################
### ###
### Set C-preprocessor switches representing user options. These are not ###
### specific to any compiler, but are general options for the simulation. ###
### ###
### NOTE: To make the user input more robust, we use regular expression ###
### syntax to match characters in the various Makefile variables. See ###
### this web page for more info: ###
### http://www.tldp.org/LDP/abs/html/x17046.html ###
### ###
###############################################################################
#------------------------------------------------------------------------------
# Compiler settings
#------------------------------------------------------------------------------
# %%%%% OpenMP parallelization (on by default) %%%%%
ifndef OMP
OMP :=yes
endif
# Option to turn off OpenMP for testing
REGEXP :=(^[Nn]|^[Oo])
ifeq ($(shell [[ "$(OMP)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNO_OMP
endif
# %%%%% Set the HPC variable if we are building for use w/ ESMF/MPI %%%%
ifeq ($(shell [[ "$(MAKECMDGOALS)" =~ "hpc" ]] && echo true),true)
HPC :=yes
export HPC
endif
# %%%%% For HPC, we disable OpenMP and turn on the full vertical grid %%%%%
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(HPC)" =~ $(REGEXP) ]] && echo true),true)
IS_HPC :=1
OMP :=no
NO_REDUCED :=yes
# PRECISION :=4
else
IS_HPC :=0
endif
# %%%%% Default to 8-byte precision unless specified otherwise %%%%%
ifndef PRECISION
PRECISION :=8
endif
# %%%%% Default to Timers disabled %%%%%
ifndef TIMERS
TIMERS :=0
endif
# %%%%% Turn on traceback (error stack report) by default %%%%%
ifndef TRACEBACK
TRACEBACK :=yes
endif
# %%%%% Set default compiler %%%%%
# %%%%% Test if mpif90/mpifort is selected (for now assume ifort) %%%%%
REGEXP :=(^[Mm][Pp][Ii])
ifeq ($(shell [[ "$(FC)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DLINUX_IFORT
REG_GNU :=(^[Gg][Nn][Uu])
REG_INTEL :=(^[Ii][Ff][Oo][Rr][Tt])
DISCRIM :=$(word 1,$(shell $(FC) --version ) )
ifeq ($(shell [[ "$(DISCRIM)" =~ $(REG_INTEL) ]] && echo true),true)
COMPILER_FAMILY :=Intel
USER_DEFS += -DLINUX_IFORT
else ifeq ($(shell [[ "$(DISCRIM)" =~ $(REG_GNU) ]] && echo true),true)
COMPILER_FAMILY :=GNU
USER_DEFS += -DLINUX_GFORTRAN
else
$(error Could not determine compiler underlying mpifort/mpif90 )
endif
endif
# %%%%% Test if Intel Fortran Compiler is selected %%%%%
REGEXP :=(^[Ii][Ff][Oo][Rr][Tt])
ifeq ($(shell [[ "$(FC)" =~ $(REGEXP) ]] && echo true),true)
# If we are building GCHP, then set the compile command to "mpifort",
# which invokes the MPI magic. Otherwise set it to $(FC). (bmy, 10/17/16)
COMPILER_FAMILY :=Intel
USER_DEFS += -DLINUX_IFORT
endif
# %%%%% Test if GNU Fortran Compiler is selected %%%%%
REGEXP :=(^[Gg][Ff][Oo][Rr][Tt][Rr][Aa][Nn])
ifeq ($(shell [[ "$(FC)" =~ $(REGEXP) ]] && echo true),true)
COMPILER_FAMILY :=GNU
USER_DEFS += -DLINUX_GFORTRAN
endif
# %%%%% Test if PGI Fortran compiler is selected %%%%%
REGEXP :=(^[Pp][Gg])
ifeq ($(shell [[ "$(FC)" =~ $(REGEXP) ]] && echo true),true)
COMPILER_FAMILY :=PGI
USER_DEFS += -DLINUX_PGI
endif
# Is this GCHP?
ifeq ($(IS_HPC),1)
COMPILE_CMD :=mpifort
else
COMPILE_CMD :=$(FC)
endif
# %%%%% ERROR CHECK! Make sure our compiler selection is valid! %%%%%
REGEXP :=((-DLINUX_)?IFORT|PGI|GFORTRAN)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_CMPLR))
endif
# Once we are sure the compiler is valid, then get the version number
COMPILER_VERSION_LONG :=$(shell $(FC) --version))
COMPILER_VERSION_LONG :=$(sort $(COMPILER_VERSION_LONG))
# For ifort, the 3rd substring of the sorted text is the version number.
# For pgfortran and gfortran, it's the 4th substring.
# NOTE: Future compiler updates may break this algorithm.
REGEXP :=(^[Ii][Ff][Oo][Rr][Tt])
ifeq ($(shell [[ "$(FC)" =~ $(REGEXP) ]] && echo true),true)
COMPILER_VERSION :=$(word 3, $(COMPILER_VERSION_LONG))
else
COMPILER_VERSION :=$(word 4, $(COMPILER_VERSION_LONG))
endif
# Major version number of the compiler
# e.g. for gfortran 8.2.0, this would be "8"
COMPILER_MAJOR_VERSION :=$(word 1,$(subst ., ,$(COMPILER_VERSION)))
#------------------------------------------------------------------------------
# Special flags for enabling experimental or development code
#------------------------------------------------------------------------------
# %%%%% DEVEL: Enable user-added experimental code %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(DEVEL)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DDEVEL
endif
# %%%%% DIAG_DEVEL: Enable experimental code specific to HEMCO %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(DIAG_DEVEL)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DDIAG_DEVEL
BPCH_DIAG :=no
endif
# %%%%% HCO_DEVEL: Enable experimental code specific to HEMCO %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(HCO_DEVEL)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DHCO_DEVEL
endif
# %%%%% HPC_DEVEL: Enable experimental code specific to GCHP %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(HPC_DEVEL)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DHPC_DEVEL
endif
# %%%%% Turn on tendencies computation %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(USE_TEND)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DUSE_TEND
BPCH_DIAG :=no
endif
#------------------------------------------------------------------------------
# GEOS-Chem HP settings
#------------------------------------------------------------------------------
# %%%%% ESMF %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(ESMF)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DESMF_
NO_GRID_NEEDED :=1
endif
# %%%%% EXTERNAL_GRID %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(EXTERNAL_GRID)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXTERNAL_GRID
NO_GRID_NEEDED :=1
endif
# %%%%% EXTERNAL_FORCING %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(EXTERNAL_FORCING)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXTERNAL_FORCING
NO_GRID_NEEDED :=1
endif
#------------------------------------------------------------------------------
# Coupling GEOS-Chem to External Models settings
#------------------------------------------------------------------------------
# %%%%% NO_EXE %%%%%
# Setting NO_EXE=y will inhibit the creation of a final "geos" executable
# and create a "libGeosCore.a" in the lib folder instead.
# Used if you are linking GEOS-Chem routines to be driven by an external model.
# (hplin, 8/23/18)
EXE_NEEDED :=1
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(NO_EXE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DMODEL_
EXE_NEEDED :=0
endif
#------------------------------------------------------------------------------
# Diagnostic settings
#------------------------------------------------------------------------------
# Turn on bpch diagnostics UNLESS specified otherwis
ifdef BPCH_DIAG
BPCH_DIAG :=yes
endif
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(BPCH_DIAG)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DBPCH_DIAG
endif
# If we are compiling GEOS-Chem "Classic", then also activate all bpch
# timeseries diagnostics. At this point (v11-02) there are some special
# timeseries diagnostics that require local-time binning, which is not
# yet available in the netCDF diagnostic output. This will preserve
# backwards compatibility for the time being. (bmy, 4/11/18)
ifeq ($(IS_HPC),0)
USER_DEFS += -DBPCH_TIMESER
endif
# Turn on bpch code for nested-grid BC's by default
# Needed for both global and nested simulations
USER_DEFS += -DBPCH_TPBC
#------------------------------------------------------------------------------
# KPP settings chemistry solver settings. NOTE: We can't redefine CHEM
# (since it is an environent variable), so define a shadow variable KPP_CHEM.
#------------------------------------------------------------------------------
# Test if the CHEM value is set
IS_CHEM_SET :=0
# %%%%% CHEM=Standard (aka benchmark) %%%%%
REGEXP :=(^[Ss][Tt][Aa][Nn][Dd][Aa][Rr][Dd])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=Standard
IS_CHEM_SET :=1
NO_REDUCED :=yes
endif
# %%%%% Test if CHEM=SOA (same as Tropchem as of v11-02a) %%%%%
REGEXP :=(^[Ss][Oo][Aa])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=Tropchem
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=SOA_SVPOA %%%%%
REGEXP :=(^[Ss][Oo][Aa]_[Ss][Vv][Pp][Oo][Aa])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=SOA_SVPOA
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=Tropchem %%%%%
REGEXP :=(^[Tt][Rr][Oo][Pp][Cc][Hh][Ee][Mm])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=Tropchem
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=NOx_Ox_HC_Aer_Br (former name for Tropchem) %%%%%
REGEXP :=(^[Nn][Oo][Xx]_[Oo][Xx]_[Hh][Cc]_[Aa][Ee][Rr]_[Bb][Rr])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=Tropchem
IS_CHEM_SET :=1
endif
# %%%%% Test if CHEM=Custom %%%%%
REGEXP :=(^[Cc][Uu][Ss][Tt][Oo][Mm])
ifeq ($(shell [[ "$(CHEM)" =~ $(REGEXP) ]] && echo true),true)
KPP_CHEM :=Custom
IS_CHEM_SET :=1
endif
# %%%%% Default setting %%%%%
# %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
# NOTE: For clarify in the future, the default setting should be to not set
# KPP_CHEM or IS_CHEM_SET if the CHEM compiler option is not passed. The default
# option would be reserved for specialty simulations that do not require the KPP
# code to be compiled. (mps, 4/22/16)
# %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
ifeq ($(IS_CHEM_SET),0)
KPP_CHEM :=Standard
IS_CHEM_SET :=1
endif
#------------------------------------------------------------------------------
# RRTMG radiative transfer model settings
#------------------------------------------------------------------------------
# %%%%% RRTMG %%%%%
RRTMG_NEEDED :=0
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(RRTMG)" =~ $(REGEXP) ]] && echo true),true)
RRTMG_NEEDED :=1
USER_DEFS += -DRRTMG
endif
#------------------------------------------------------------------------------
# Coupled grid settings (yanyy,6/18/14)
#------------------------------------------------------------------------------
# %%%%% Couple %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(COUPLE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE
endif
# %%%%% China (CH) and 4x5 %%%%%
REGEXP :=(^4.5[Cc][Hh]|^4\.0.5\.0[Cc][Hh])
ifeq ($(shell [[ "$(COUPLECH)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_CH
endif
# %%%%% Europe (EU) and 4x5 %%%%%
REGEXP :=(^4.5[Ee][Uu]|^4\.0.5\.0[Ee][Uu])
ifeq ($(shell [[ "$(COUPLEEU)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_EU
endif
# %%%%% North America (NA) and 4x5 %%%%%
REGEXP :=(^4.5[Nn][Aa]|^4\.0.5\.0[Nn][Aa])
ifeq ($(shell [[ "$(COUPLENA)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_NA
endif
# %%%%% SE Asia (SE) and 4x5 %%%%%
REGEXP :=(^4.5[Nn][Aa]|^4\.0.5\.0[Nn][Aa])
ifeq ($(shell [[ "$(COUPLESE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_4x5_SE
endif
# %%%%% China (CH) and 2x2.5 %%%%%
REGEXP :=(^2.25[Cc][Hh]|^2.2\.5[Cc][Hh]|^2\.0.2\.5[Cc][Hh])
ifeq ($(shell [[ "$(COUPLECH)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_CH
endif
# %%%%% Europe (EU) and 2x2.5 %%%%%
REGEXP :=(^2.25[Ee][Uu]|^2.2\.5[Ee][Uu]|^2\.0.2\.5[Ee][Uu])
ifeq ($(shell [[ "$(COUPLEEU)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_EU
endif
# %%%%% North America (NA) and 2x2.5 %%%%%
REGEXP :=(^2.25[Nn][Aa]|^2.2\.5[Nn][Aa]|^2\.0.2\.5[Nn][Aa])
ifeq ($(shell [[ "$(COUPLENA)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_NA
endif
# %%%%% SE Asia (SE) and 2x2.5 %%%%%
REGEXP :=(^2.25[Nn][Aa]|^2.2\.5[Nn][Aa]|^2\.0.2\.5[Nn][Aa])
ifeq ($(shell [[ "$(COUPLESE)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DEXCHANGE -DEXCHANGE_2x25_SE
endif
# %%%%% ERROR CHECK! Make sure our NEST selection is valid! %%%%%
ifdef COUPLE_NEEDED
REGEXP :=((\-DEXCHANGE_)?CH|NA|EU)
ifneq ($(shell [[ "$(USER_DEFS)" =~ $(REGEXP) ]] && echo true),true)
$(error $(ERR_COUPLE))
endif
endif
#------------------------------------------------------------------------------
# Aerosol microphysics settings
#------------------------------------------------------------------------------
# %%%%% TOMAS, 30 bins (default) %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DTOMAS
endif
# %%%%% TOMAS, 40 bins %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS40)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DTOMAS -DTOMAS40
endif
# %%%%% TOMAS, 15 bins %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS15)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DTOMAS -DTOMAS15
endif
# %%%%% TOMAS, 12 bins %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TOMAS12)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DTOMAS -DTOMAS12
endif
# %%%%% APM %%%%%
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(APM)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DAPM
endif
#------------------------------------------------------------------------------
# Special chemistry settings
#------------------------------------------------------------------------------
# Activate Global Terrestrial Mercury Model (GTMM) if necessary
GTMM_NEEDED :=0
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(GTMM_Hg)" =~ $(REGEXP) ]] && echo true),true)
GTMM_NEEDED :=1
USER_DEFS += -DGTMM_Hg
endif
# Option to turn off ISORROPIA for testing
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(NO_ISO)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DNO_ISORROPIA
endif
#------------------------------------------------------------------------------
# Performance profiling
#------------------------------------------------------------------------------
# Compile with TAU profiler (from ParaTools, Inc)
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TAU_PROF)" =~ $(REGEXP) ]] && echo true),true)
COMPILE_CMD :=tau_f90.sh
endif
# Compile with GNU profiler (gprof)
IS_GPROF :=0
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(GPROF)" =~ $(REGEXP) ]] && echo true),true)
IS_GPROF :=1
endif
#------------------------------------------------------------------------------
# Add test for mass conservation
#------------------------------------------------------------------------------
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(MASSCONS)" =~ $(REGEXP) ]] && echo true),true)
USER_DEFS += -DMASSCONS
endif
###############################################################################
### ###
### Set linker commands for local and external libraries (incl. netCDF) ###
### ###
###############################################################################
# Test if we have found the nf-config file, which indicates a separate
# netCDF-Fortran build. IS_NF_CONFIG=0 indicates that we found nf-config.
IS_NF_CONFIG :=$(shell test -f $(GC_F_BIN)/nf-config; echo $$?)
# Test for GEOS-Chem-Libraries or onboard netCDF libraries
ifeq ($(shell [[ "$(GC_LIB)" =~ GEOS-Chem-Libraries ]] && echo true),true)
#-----------------------------------------------------------------------
# %%%%% We are using the GEOS-Chem-Libraries package %%%%%
#
# Both netCDF-Fortran and netCDF-C library files are in the same path
#-----------------------------------------------------------------------
# NetCDF include command: 1 library path
NC_INC_CMD := -I$(GC_INCLUDE)
# NetCDF link command: Add a workaround so that $GC_LIB will specify
# the library path. This should prevent any issues caused by building
# the GEOS-Chem-Libraries in one location and moving them to another.
NC_LINK_CMD := $(shell $(GC_BIN)/nf-config --flibs)
NC_LINK_CMD += $(shell $(GC_BIN)/nc-config --libs)
NC_LINK_CMD := $(filter -l%,$(NC_LINK_CMD))
NC_LINK_CMD :=-L$(GC_LIB) $(NC_LINK_CMD)
else
ifeq ($(IS_NF_CONFIG),0)
#-----------------------------------------------------------------------
# %%%%% We are using the onboard netCDF libraries %%%%%
#
# NetCDF-Fortran and NetCDF-C library files are in different paths,
# which is typical of netCDF versions 4.2 and higher.
#-----------------------------------------------------------------------
# NetCDF include command: 2 library paths
NC_INC_CMD := -I$(GC_INCLUDE) -I$(GC_F_INCLUDE)
# NetCDF link command: 2 sets of link commands
NC_LINK_CMD := $(shell $(GC_F_BIN)/nf-config --flibs)
NC_LINK_CMD += $(shell $(GC_BIN)/nc-config --libs)
else
#-----------------------------------------------------------------------
# %%%%% We are using the onboard netCDF libraries %%%%%
#
# NetCDF-Fortran and NetCDF-C library files are in the same path,
# which is typical netCDF versions earlier than 4.2.
#-----------------------------------------------------------------------
# NetCDF include command: 1 library path
NC_INC_CMD := -I$(GC_INCLUDE)
# NetCDF link command: 1 set of link commands
NC_LINK_CMD := $(shell $(GC_BIN)/nc-config --flibs)
endif
endif
# Save for backwards compatibility
NCL := $(NC_LINK_CMD)
#----------------------------
# For GEOS-Chem
#----------------------------
# Base linker command: specify the library directory
LINK :=-L$(LIB)
# Append library for GTMM, if necessary
ifeq ($(GTMM_NEEDED),1)
LINK :=$(LINK) -lHg
endif
# Append library for RRTMG, if necessary
ifeq ($(RRTMG_NEEDED),1)
LINK :=$(LINK) -lrad
endif
# Create linker command to create the GEOS-Chem executable
LINK :=$(LINK) -lIsorropia -lObsPack -lHistory
LINK :=$(LINK) -lHCOI -lHCOX -lHCO
LINK :=$(LINK) -lGeosUtil -lKpp -lHeaders -lNcUtils
LINK :=$(LINK) $(NC_LINK_CMD)
#----------------------------
# For the HEMCO standalone
#----------------------------
# Create linker command to create the HEMCO standalone executable
LINK_HCO :=-L$(LIB) -lHCOI -lHCOX -lHCO -lGeosUtil -lHeaders
LINK_HCO :=$(LINK_HCO) -lNcUtils $(NC_LINK_CMD)
###############################################################################
### ###
### Test if the netCDF library was built with compression enabled ###
### ###
### NOTE: Compressing the netCDF files will make it impossible to compare ###
### them for identical-ness in a unit test or diff test. Therefore, we ###
### have added some extra checks to skip the compression if so desired. ###
### ###
###############################################################################
# Assume we will turn on netCDF compression (if present)
IS_DEFLATE :=1
# Unless NC_NODEFLATE=y
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(NC_NODEFLATE)" =~ $(REGEXP) ]] && echo true),true)
IS_DEFLATE :=0
endif
# Or DEBUG=y. This will make sure unit tests and diff tests aren't affected.
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(DEBUG)" =~ $(REGEXP) ]] && echo true),true)
IS_DEFLATE :=0
endif
# Skip netCDF compression unless it's requested (or not a debug run)
ifeq ($(IS_DEFLATE),1)
# Test if the "nf_def_var_deflate" function is defined in netcdf.inc
# Look for netcdf.inc where the netCDF-Fortran library is located
ifdef GC_F_INCLUDE
GREP :=$(strip $(shell grep nf_def_var_deflate $(GC_F_INCLUDE)/netcdf.inc))
else
GREP :=$(strip $(shell grep nf_def_var_deflate $(GC_INCLUDE)/netcdf.inc))
endif
# Look for the second word of the combined search results
WORD :=$(word 2,"$(GREP)")
# If it matches "nf_def_var_deflate", then define Cpp flag NC_HAS_COMPRESSION
ifeq ($(WORD),nf_def_var_deflate)
USER_DEFS += -DNC_HAS_COMPRESSION
endif
endif
###############################################################################
### ###
### HPC Settings: Build & use ESMF & MAPL for Grid-Independent GEOS-Chem ###
### ###
###############################################################################
# If we are building w/ the HPC target, then include GIGC.mk as well
# Determine if we are building with the hpc target
ifeq ($(IS_HPC),1)
ifneq ("$(wildcard $(CURDIR)/../GCHP/GIGC.mk)","")
include $(CURDIR)/../GCHP/GIGC.mk
else
ifneq ("$(wildcard $(CURDIR)/../../GCHP/GIGC.mk)","")
include $(CURDIR)/../../GCHP/GIGC.mk
else
$(error $(ERR_GIGC))
endif
endif
#FFLAGS += -double-size 32 -real-size 32 -r4
endif
###############################################################################
### ###
### Define settings for the GNU FORTRAN COMPILER (aka gfortran) ###
### ###
###############################################################################
ifeq ($(COMPILER_FAMILY),GNU)
# Get the GNU Fortran version
GNU_VERSION :=$(shell $(FC) -dumpversion)
GNU_VERSION :=$(subst .,,$(GNU_VERSION))
NEWER_THAN_447 :=$(shell perl -e "print ($(GNU_VERSION) gt 447)")
IS_GNU_8 :=$(shell perl -e "print ($(GNU_VERSION) ge 800)")
# Base set of compiler flags
FFLAGS :=-cpp -w -std=legacy -fautomatic -fno-align-commons
ifeq ($(IS_HPC),1)
FFLAGS += -fconvert=native
else
FFLAGS += -fconvert=big-endian
endif
FFLAGS += -fno-range-check
# OPTIONAL: Add the GNU Fortran -march option, which compiles for a
# specific computer architecture. This may cause issues on some types
# of CPUs (e.g. Intel), so we have left this as an optional argument.
ifdef M_ARCH
FFLAGS += -march=$(M_ARCH)
endif
# Default optimization level for all routines (-O3)
ifndef OPT
# Options of interest
# -limf Intel math libraries - machine must have them
# -O3 Highest safe optimization level
# -march=native Make the binary machine-specific. If in doubt,
# use a specific architecture, eg...
# -march=corei7-avx Binary uses optimizations for
# Intel Sandy-Bridge Xeon (e.g. E5-2680)
# -mfpmath=sse Use SSE extensions
# -funroll-loops Enable loop unrolling
# -ffast-math Enable fast math optimizations
OPT := -O3 -funroll-loops
#OPT := -O3 -march=corei7-avx -mfpmath=sse -funroll-loops
endif
# Pick compiler options for debug run or regular run
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(DEBUG)" =~ $(REGEXP) ]] && echo true),true)
#-fcheck=all would be more comprehensive but would force bounds checking
FFLAGS += -g -gdwarf-2 -gstrict-dwarf -O0
FFLAGS += -Wall -Wextra -Wconversion
FFLAGS += -Warray-temporaries -fcheck-array-temporaries
TRACEBACK :=yes
USER_DEFS += -DDEBUG
else
FFLAGS += $(OPT)
endif
# Prevent any optimizations that would change numerical results
#GFORTRAN_BAD#FFLAGS += -fp-model source
# Turn on OpenMP parallelization
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(OMP)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -fopenmp
endif
# Get Operating System (Linux = Linux; Darwin = MacOSX)
ifndef UNAME
UNAME :=$(shell uname)
endif
# OSX compilation options
ifeq ($(UNAME),Darwin)
# This has not yet been tested
$(error $(ERR_OSCOMP))
# FFLAGS += -Wl,-stack_size,0x2cb410000 # 12 GB of stack space
# ifdef DEBUG
# FFLAGS += -g0 -debug -save-temps -fpic -Wl,-no_pie
# endif
endif
# Add options for medium memory model. This is to prevent G-C from
# running out of memory at hi-res, especially when using netCDF I/O.
ifneq ($(UNAME),Darwin)
#GFORTRAN_BAD#FFLAGS += -mcmodel=medium -shared-intel
FFLAGS += -mcmodel=medium
endif
# Turn on checking for floating-point exceptions
# These are approximately equivalent to -fpe0 -ftrapuv in IFORT
# NOTE: GNU Fortran 4.4.7 does not allow for -finit-real-snan, so
# we will only add this flag for versions newer than 4.4.7
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(FPE)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -ffpe-trap=invalid,zero,overflow
ifeq ($(NEWER_THAN_447),1)
FFLAGS += -finit-real=snan
endif
endif
ifeq ($(shell [[ "$(FPEX)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -ffpe-trap=invalid,zero,overflow
ifeq ($(NEWER_THAN_447),1)
FFLAGS += -finit-real=snan
endif
endif
# Add option for "array out of bounds" checking
REGEXP := (^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(BOUNDS)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -fbounds-check
endif
# Also add traceback option
REGEXP :=(^[Yy]|^[Yy][Ee][Ss])
ifeq ($(shell [[ "$(TRACEBACK)" =~ $(REGEXP) ]] && echo true),true)
FFLAGS += -fbacktrace
ifndef DEBUG
FFLAGS += -g
endif
endif
# Compile for use with the GNU profiler (gprof), if necessary
ifeq ($(IS_GPROF),1)
FFLAGS += -pg
endif
# Add flexible precision declaration
ifeq ($(PRECISION),8)
USER_DEFS += -DUSE_REAL8
endif
# Add timers declaration
ifeq ($(TIMERS),1)
USER_DEFS += -DUSE_TIMERS
endif