pytest.yml

name: Python Tests

on: [push, pull_request]

jobs:
  build:

    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v2

    - name: Set up Python
      uses: actions/setup-python@v2
      with:
        python-version: 3.x

    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip
        pip install .

    - name: Install pytest
      run: |
        pip install pytest pytest-cov

    - name: Run tests
      run: |
        pytest --cov=gcms_data_analysis --cov-report=html

    - name: Generate Badge
      run: |
        COVERAGE=$(cat docs/htmlcov/index.html | grep -oP '(?<=<td class="right">)[0-9]+\.[0-9]+%' | head -n 1 | tr -d '%')
        curl "https://img.shields.io/badge/coverage-$COVERAGE-green.svg" > coverage.svg

    - name: Upload Badge
      uses: actions/upload-artifact@v2
      with:
        name: coverage-badge
        path: coverage.svg