From 5cc8a80037032b47635543bb96e17f3e59cd5fad Mon Sep 17 00:00:00 2001 From: moshi Date: Sat, 14 Sep 2024 01:42:13 +0900 Subject: [PATCH] Update deps --- requirements-dev.lock | 104 +++++++++++++++++++----------------------- requirements.lock | 18 ++++---- 2 files changed, 55 insertions(+), 67 deletions(-) diff --git a/requirements-dev.lock b/requirements-dev.lock index 303ebb5..5deb80e 100644 --- a/requirements-dev.lock +++ b/requirements-dev.lock @@ -12,23 +12,19 @@ -e file:. asttokens==2.4.1 # via stack-data -astunparse==1.6.3 - # via griffe -attrs==23.2.0 +attrs==24.2.0 # via jsonschema # via referencing -babel==2.15.0 +babel==2.16.0 # via mkdocs-material -backcall==0.2.0 - # via ipython beautifulsoup4==4.12.3 # via nbconvert -biopython==1.83 +biopython==1.84 # via pycirclize -black==24.4.2 +black==24.8.0 bleach==6.1.0 # via nbconvert -certifi==2024.7.4 +certifi==2024.8.30 # via requests cfgv==3.4.0 # via pre-commit @@ -43,13 +39,13 @@ colorama==0.4.6 # via mkdocs-material comm==0.2.2 # via ipykernel -contourpy==1.1.1 +contourpy==1.3.0 # via matplotlib -coverage==7.6.0 +coverage==7.6.1 # via pytest-cov cycler==0.12.1 # via matplotlib -debugpy==1.8.2 +debugpy==1.8.5 # via ipykernel decorator==5.1.1 # via ipython @@ -58,39 +54,38 @@ defusedxml==0.7.1 distlib==0.3.8 # via virtualenv exceptiongroup==1.2.2 + # via ipython # via pytest -executing==2.0.1 +executing==2.1.0 # via stack-data fastjsonschema==2.20.0 # via nbformat -filelock==3.15.4 +filelock==3.16.0 # via virtualenv fonttools==4.53.1 # via matplotlib ghp-import==2.1.0 # via mkdocs -griffe==0.47.0 +griffe==1.3.0 # via mkdocstrings-python identify==2.6.0 # via pre-commit -idna==3.7 +idna==3.8 # via requests -importlib-metadata==8.0.0 +importlib-metadata==8.4.0 # via jupyter-client # via markdown # via mkdocs # via mkdocs-get-deps # via mkdocstrings # via nbconvert -importlib-resources==6.4.0 - # via jsonschema - # via jsonschema-specifications +importlib-resources==6.4.5 # via matplotlib iniconfig==2.0.0 # via pytest ipykernel==6.29.5 # via mkdocs-jupyter -ipython==8.12.3 +ipython==8.18.1 # via ipykernel jedi==0.19.1 # via ipython @@ -114,11 +109,11 @@ jupyter-core==5.7.2 # via nbformat jupyterlab-pygments==0.3.0 # via nbconvert -jupytext==1.16.3 +jupytext==1.16.4 # via mkdocs-jupyter -kiwisolver==1.4.5 +kiwisolver==1.4.7 # via matplotlib -markdown==3.6 +markdown==3.7 # via mkdocs # via mkdocs-autorefs # via mkdocs-material @@ -133,12 +128,12 @@ markupsafe==2.1.5 # via mkdocs-autorefs # via mkdocstrings # via nbconvert -matplotlib==3.7.5 +matplotlib==3.9.2 # via pycirclize matplotlib-inline==0.1.7 # via ipykernel # via ipython -mdit-py-plugins==0.4.1 +mdit-py-plugins==0.4.2 # via jupytext mdurl==0.1.2 # via markdown-it-py @@ -147,23 +142,24 @@ mergedeep==1.3.4 # via mkdocs-get-deps mistune==3.0.2 # via nbconvert -mkdocs==1.6.0 +mkdocs==1.6.1 # via mkdocs-autorefs # via mkdocs-jupyter # via mkdocs-material # via mkdocstrings -mkdocs-autorefs==1.0.1 +mkdocs-autorefs==1.2.0 # via mkdocstrings + # via mkdocstrings-python mkdocs-get-deps==0.2.0 # via mkdocs -mkdocs-jupyter==0.24.8 -mkdocs-material==9.5.28 +mkdocs-jupyter==0.25.0 +mkdocs-material==9.5.34 # via mkdocs-jupyter mkdocs-material-extensions==1.3.1 # via mkdocs-material -mkdocstrings==0.25.1 +mkdocstrings==0.26.1 # via mkdocstrings-python -mkdocstrings-python==1.10.5 +mkdocstrings-python==1.11.1 # via mkdocstrings mypy-extensions==1.0.0 # via black @@ -179,7 +175,7 @@ nest-asyncio==1.6.0 # via ipykernel nodeenv==1.9.1 # via pre-commit -numpy==1.24.4 +numpy==2.0.2 # via biopython # via contourpy # via matplotlib @@ -193,9 +189,9 @@ packaging==24.1 # via mkdocs # via nbconvert # via pytest -paginate==0.5.6 +paginate==0.5.7 # via mkdocs-material -pandas==2.0.3 +pandas==2.2.2 # via pycirclize pandocfilters==1.5.1 # via nbconvert @@ -206,13 +202,9 @@ pathspec==0.12.1 # via mkdocs pexpect==4.9.0 # via ipython -pickleshare==0.7.5 - # via ipython pillow==10.4.0 # via matplotlib -pkgutil-resolve-name==1.3.10 - # via jsonschema -platformdirs==4.2.2 +platformdirs==4.3.2 # via black # via jupyter-core # via mkdocs-get-deps @@ -220,26 +212,26 @@ platformdirs==4.2.2 # via virtualenv pluggy==1.5.0 # via pytest -pre-commit==3.5.0 +pre-commit==3.8.0 prompt-toolkit==3.0.47 # via ipython psutil==6.0.0 # via ipykernel ptyprocess==0.7.0 # via pexpect -pure-eval==0.2.2 +pure-eval==0.2.3 # via stack-data pygments==2.18.0 # via ipython # via mkdocs-jupyter # via mkdocs-material # via nbconvert -pymdown-extensions==10.8.1 +pymdown-extensions==10.9 # via mkdocs-material # via mkdocstrings -pyparsing==3.1.2 +pyparsing==3.1.4 # via matplotlib -pytest==8.2.2 +pytest==8.3.3 # via pytest-cov pytest-cov==5.0.0 python-dateutil==2.9.0.post0 @@ -248,9 +240,8 @@ python-dateutil==2.9.0.post0 # via matplotlib # via pandas pytz==2024.1 - # via babel # via pandas -pyyaml==6.0.1 +pyyaml==6.0.2 # via jupytext # via mkdocs # via mkdocs-get-deps @@ -259,26 +250,25 @@ pyyaml==6.0.1 # via pyyaml-env-tag pyyaml-env-tag==0.1 # via mkdocs -pyzmq==26.0.3 +pyzmq==26.2.0 # via ipykernel # via jupyter-client referencing==0.35.1 # via jsonschema # via jsonschema-specifications -regex==2024.5.15 +regex==2024.7.24 # via mkdocs-material requests==2.32.3 # via mkdocs-material -rpds-py==0.19.0 +rpds-py==0.20.0 # via jsonschema # via referencing -ruff==0.5.1 +ruff==0.6.4 six==1.16.0 # via asttokens - # via astunparse # via bleach # via python-dateutil -soupsieve==2.5 +soupsieve==2.6 # via beautifulsoup4 stack-data==0.6.3 # via ipython @@ -310,17 +300,15 @@ tzdata==2024.1 # via pandas urllib3==2.2.2 # via requests -virtualenv==20.26.3 +virtualenv==20.26.4 # via pre-commit -watchdog==4.0.1 +watchdog==5.0.2 # via mkdocs wcwidth==0.2.13 # via prompt-toolkit webencodings==0.5.1 # via bleach # via tinycss2 -wheel==0.43.0 - # via astunparse -zipp==3.19.2 +zipp==3.20.1 # via importlib-metadata # via importlib-resources diff --git a/requirements.lock b/requirements.lock index 043f4d1..52e2afb 100644 --- a/requirements.lock +++ b/requirements.lock @@ -10,21 +10,21 @@ # universal: false -e file:. -biopython==1.83 +biopython==1.84 # via pycirclize -contourpy==1.1.1 +contourpy==1.3.0 # via matplotlib cycler==0.12.1 # via matplotlib fonttools==4.53.1 # via matplotlib -importlib-resources==6.4.0 +importlib-resources==6.4.5 # via matplotlib -kiwisolver==1.4.5 +kiwisolver==1.4.7 # via matplotlib -matplotlib==3.7.5 +matplotlib==3.9.2 # via pycirclize -numpy==1.24.4 +numpy==2.0.2 # via biopython # via contourpy # via matplotlib @@ -32,11 +32,11 @@ numpy==1.24.4 # via pycirclize packaging==24.1 # via matplotlib -pandas==2.0.3 +pandas==2.2.2 # via pycirclize pillow==10.4.0 # via matplotlib -pyparsing==3.1.2 +pyparsing==3.1.4 # via matplotlib python-dateutil==2.9.0.post0 # via matplotlib @@ -47,5 +47,5 @@ six==1.16.0 # via python-dateutil tzdata==2024.1 # via pandas -zipp==3.19.2 +zipp==3.20.1 # via importlib-resources