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I am facing the exact same error using Postgres. There is no such file (migrations/skeleton.js) in the node_modules. Is this a bug or just some configuration missing?
What you are doing?
Create a new migration file in a existent directory with others migrations
sequelize migration:generate --name m1
What do you expect to happen?
A new migration file appears
What is actually happening?
Sequelize can't create new migration because migrations directory already exists.
Dialect: mysql
Database version: 5.6
Sequelize CLI version: 3.2.0-c
Sequelize version: 5.21.4
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