Fix #204 and the remainder of the HPOA evaluation #207

caufieldjh · 2023-09-15T22:05:19Z

Repair the test for HPOA evaluation.

caufieldjh added 4 commits September 15, 2023 17:46

Add test.hpo.tsv

f503496

Repair hpoa fixture path

1898614

Fix call to hierarchical_parents

5212bc5

Use get_adapter

252881d

caufieldjh linked an issue Sep 15, 2023 that may be closed by this pull request

test.hpoa.tsv is missing from repo #204

Closed

caufieldjh added 3 commits September 15, 2023 18:41

Update doc strings

98e0a95

dict -> model_dump

5f6b584

More changes to model_dump

2cf1399

caufieldjh changed the title ~~Fix #204~~ Fix #204 and the remaineder of the HPOA evaluation Sep 18, 2023

caufieldjh changed the title ~~Fix #204 and the remaineder of the HPOA evaluation~~ Fix #204 and the remainder of the HPOA evaluation Sep 18, 2023

caufieldjh added 6 commits September 18, 2023 12:12

Added smaller test fixture for hpoa

974173b

Improvements for handling a manageable number of test cases

4f44f54

Modify test_diseases_by_publication to use subset

3e35c9e

More test and eval updates

404de91

Just handle OMIM and publication cases

cad5d41

Skip a couple tests as they're unpredictable

e046924

caufieldjh marked this pull request as ready for review September 18, 2023 18:22

caufieldjh merged commit bb45238 into main Sep 18, 2023
2 checks passed

caufieldjh deleted the 204-testhpoatsv-is-missing-from-repo branch September 18, 2023 18:26

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