dxapp.json

{
  "name": "peddy_v1.5",
  "title": "peddy_v1.5",
  "summary": "v1.5 - Generates a run-wide QC performing a sex check and checking for duplicate samples",
  "tags": [
    "QC",
    "Statistics"
  ],
  "properties": {
    "github release": "v1.5"
  },
  "dxapi": "1.0.0",
  "inputSpec": [
    {
      "name": "project_for_peddy",
      "label": "project to get quality controlled by peddy",
      "help": "name of project to get processed by peddy",
      "class": "string"
    }
  ],
  "outputSpec": [
    {
      "name": "peddy",
      "label": "peddy_reports",
      "help": "Several files as generated by peddy.",
      "class": "array:file"
    }
  ],
  "runSpec": {
    "dxapi": "1.0.0",
    "distribution": "Ubuntu",
    "release": "14.04",
    "execDepends": [],
    "assetDepends": [
      {
        "project": "project-ByfFPz00jy1fk6PjpZ95F27J",
        "folder": "/Apps/Docker",
        "name": "quay.io/biocontainers/bcftools:1.6--1",
        "version": "0.0.1"
      },
      {
        "project": "project-ByfFPz00jy1fk6PjpZ95F27J",
        "folder": "/Apps/Docker",
        "name": "quay.io/biocontainers/peddy:0.3.1--py27_0",
        "version": "0.0.1"
      }
    ],
    "systemRequirementsByRegion": {
      "aws:us-east-1": {
        "main": {
          "instanceType": "mem1_ssd1_x2"
        }
      }
    },
    "systemRequirements": {
      "main": {
        "instanceType": "mem1_ssd1_x2"
      }
    },
    "file": "src/code.sh",
    "interpreter": "bash"
  },
  "access":{
    "allProjects":"VIEW"
  }
}