Pin BLAS implementation to OpenBLAS (#201)

Co-authored-by: Richard Höchenberger <[email protected]>

assets/post_install_linux.sh

@@ -21,5 +21,8 @@ ${PREFIX}/bin/conda env config vars set PYTHONNOUSERSITE=1
 echo "ℹ️ Disabling mamba package manager banner."
 ${PREFIX}/bin/conda env config vars set MAMBA_NO_BANNER=1
 
+echo "ℹ️ Pinning BLAS implementation to OpenBLAS"
+echo "libblas=*=*openblas" >>${PREFIX}/conda-meta/pinned
+
 echo "ℹ️ Running mne sys_info."
 ${PREFIX}/bin/conda run mne sys_info || true

assets/post_install_macOS.sh

@@ -50,6 +50,9 @@ ${DSTBIN}/conda env config vars set MAMBA_NO_BANNER=1
 logger -p 'install.info' "ℹ️ Configuring Matplotlib to use the Qt backend by default"
 sed -i '.bak' "s/##backend: Agg/backend: qtagg/" ${DSTROOT}/.mne-python/lib/python${PYSHORT}/site-packages/matplotlib/mpl-data/matplotlibrc
 
+logger -p 'install.info' "ℹ️ Pinning BLAS implementation to OpenBLAS"
+echo "libblas=*=*openblas" >>${DSTROOT}/.mne-python/conda-meta/pinned
+
 logger -p 'install.info' "Fixing permissions of entire conda environment"
 chown -R $USER_FROM_HOMEDIR "${DSTROOT}/.mne-python"
 

assets/post_install_windows.bat

@@ -4,5 +4,8 @@ echo ℹConfiguring Python to ignore user-installed local packages.
 echo ℹDisabling mamba package manager banner.
 "%PREFIX%\bin\conda" env config vars set MAMBA_NO_BANNER=1
 
+echo ℹPinning BLAS implementation to OpenBLAS
+echo "libblas=*=*openblas" >>"%PREFIX%\bin\conda\conda-meta\pinned"
+
 echo ℹRunning mne sys_info.
 "%PREFIX%\bin\conda" run mne sys_info

recipes/mne-python_1.5/construct.yaml

@@ -1,4 +1,4 @@
-version: 1.5.0_0
+version: 1.5.0_1
 name: MNE-Python
 company: MNE-Python Developers
 # When the version above changes to a new major/minor, it needs to be updated
@@ -18,17 +18,17 @@ conclusion_file: ../../assets/conclusion.rtf
 initialize_by_default: false
 register_python_default: false
 
-default_prefix: ${HOME}/mne-python/1.5.0_0                          # [linux]
-default_prefix: "%USERPROFILE%\\mne-python\\1.5.0_0"                # [win]
-default_prefix_domain_user: "%LOCALAPPDATA%\\mne-python\\1.5.0_0"   # [win]
-default_prefix_all_users: "%ALLUSERSPROFILE%\\mne-python\\1.5.0_0"  # [win]
+default_prefix: ${HOME}/mne-python/1.5.0_1                          # [linux]
+default_prefix: "%USERPROFILE%\\mne-python\\1.5.0_1"                # [win]
+default_prefix_domain_user: "%LOCALAPPDATA%\\mne-python\\1.5.0_1"   # [win]
+default_prefix_all_users: "%ALLUSERSPROFILE%\\mne-python\\1.5.0_1"  # [win]
 
 uninstall_name: MNE-Python ${VERSION} (Python ${PYVERSION})
 
-installer_filename: MNE-Python-1.5.0_0-macOS_Intel.pkg  # [osx and not arm64]
-installer_filename: MNE-Python-1.5.0_0-macOS_M1.pkg     # [osx and arm64]
-installer_filename: MNE-Python-1.5.0_0-Windows.exe      # [win]
-installer_filename: MNE-Python-1.5.0_0-Linux.sh         # [linux]
+installer_filename: MNE-Python-1.5.0_1-macOS_Intel.pkg  # [osx and not arm64]
+installer_filename: MNE-Python-1.5.0_1-macOS_M1.pkg     # [osx and arm64]
+installer_filename: MNE-Python-1.5.0_1-Windows.exe      # [win]
+installer_filename: MNE-Python-1.5.0_1-Linux.sh         # [linux]
 
 post_install: ../../assets/post_install_macOS.sh        # [osx]
 post_install: ../../assets/post_install_linux.sh        # [linux]
@@ -64,7 +64,7 @@ specs:
 
   - mne =1.5.0=*_0
   - mne-installer-menus =1.5.0=*_0
-  - mne-bids =0.12.0
+  - mne-bids =0.13.0
   - mne-bids-pipeline =1.4.0
   - mne-qt-browser =0.5.2
   - mne-connectivity =0.5.0
@@ -82,12 +82,14 @@ specs:
   - pyriemann =0.5
   - pyprep =0.4.2
   - openmeeg =2.5.6
+  # BLAS
+  - openblas =0.3.23
+  - libblas =3.9.0=*openblas
   # Python
   - python =3.11.4
   - pip =23.2.1
   - conda =23.5.2
   - mamba =1.4.9
-  - openblas =0.3.23
   - jupyter =1.0.0
   - jupyterlab =4.0.5
   - ipykernel =6.25.1
@@ -105,7 +107,7 @@ specs:
   - pingouin =0.5.3
   - pycircstat =0.0.2
   # MRI
-  - fsleyes =1.7.0
+  - fsleyes =1.8.2
   - dcm2niix =1.0.20230411
   # Time-frequency analysis
   - pactools =0.3.1
@@ -126,17 +128,17 @@ specs:
   # various biological signals (ECG, EOG, EMG, …)
   - neurokit2 =0.2.5
   # GitHub client, https://cli.github.com
-  - gh =2.32.1
+  - gh =2.33.0
   # NeuroSpin needs the following
   - questionary =2.0.0
   - pqdm =0.2.0
   # Viz
   - matplotlib =3.7.2
   - ipympl =0.9.3
   - seaborn =0.12.2
-  - plotly =5.16.0
+  - plotly =5.16.1
   - vtk =9.2.6
-  - git =2.41.0  # [win]
+  - git =2.42.0  # [win]
   - make =4.3  # [win]
   - ipywidgets =8.1.0
 
@@ -146,4 +148,4 @@ condarc:
     - conda-forge
   channel_priority: strict
   allow_other_channels: false
-  env_prompt: "(mne-1.5.0_0) "
+  env_prompt: "(mne-1.5.0_1) "