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environment.yml
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name: fastMSA
channels:
- pytorch
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=4.5=1_gnu
- abseil-cpp=20210324.0=h9c3ff4c_0
- absl-py=1.0.0=pyhd8ed1ab_0
- aiohttp=3.7.4.post0=py38h7f8727e_2
- antlr-python-runtime=4.8=pyhd8ed1ab_3
- arrow-cpp=4.0.0=py38ha12db41_1_cpu
- async-timeout=3.0.1=py_1000
- attrs=21.4.0=pyhd8ed1ab_0
- aws-c-cal=0.5.11=h95a6274_0
- aws-c-common=0.6.2=h7f98852_0
- aws-c-event-stream=0.2.7=h3541f99_13
- aws-c-io=0.10.5=hfb6a706_0
- aws-checksums=0.1.11=ha31a3da_7
- aws-sdk-cpp=1.8.186=hb4091e7_3
- biopython=1.79=py38h497a2fe_0
- biotite=0.29.0=py38h497a2fe_0
- blas=1.0=mkl
- blinker=1.4=py_1
- boost-cpp=1.74.0=hc6e9bd1_3
- bottleneck=1.3.4=py38hce1f21e_0
- brotli=1.0.9=h7f98852_5
- brotli-bin=1.0.9=h7f98852_5
- brotlipy=0.7.0=py38h27cfd23_1003
- bzip2=1.0.8=h7b6447c_0
- c-ares=1.18.1=h7f8727e_0
- ca-certificates=2024.3.11=h06a4308_0
- cachetools=5.0.0=pyhd8ed1ab_0
- certifi=2024.2.2=py38h06a4308_0
- cffi=1.15.0=py38hd667e15_1
- chardet=4.0.0=py38h578d9bd_2
- charset-normalizer=2.0.4=pyhd3eb1b0_0
- click=7.1.2=pyh9f0ad1d_0
- colorama=0.4.4=pyh9f0ad1d_0
- configparser=5.2.0=pyhd8ed1ab_0
- cryptography=36.0.0=py38h9ce1e76_0
- cudatoolkit=11.3.1=h2bc3f7f_2
- dataclasses=0.8=pyhc8e2a94_3
- dendropy=4.5.2=pyh3252c3a_0
- diamond=2.0.11=hdcc8f71_0
- dill=0.3.8=pyhd8ed1ab_0
- docker-pycreds=0.4.0=py_0
- fair-esm=1.0.2=pyhd8ed1ab_0
- faiss-cpu=1.7.2=py3.8_h2a577fa_0_cpu
- ffmpeg=4.3=hf484d3e_0
- freetype=2.11.0=h70c0345_0
- fsspec=2022.2.0=pyhd8ed1ab_0
- future=0.18.2=py38h578d9bd_4
- gawk=5.1.0=h7b6447c_0
- gflags=2.2.2=he1b5a44_1004
- giflib=5.2.1=h7b6447c_0
- gitdb=4.0.9=pyhd8ed1ab_0
- gitpython=3.1.27=pyhd8ed1ab_0
- glog=0.4.0=h49b9bf7_3
- gmp=6.2.1=h2531618_2
- gnutls=3.6.15=he1e5248_0
- google-auth=2.6.2=pyh6c4a22f_0
- google-auth-oauthlib=0.4.6=pyhd8ed1ab_0
- grpc-cpp=1.37.1=h36de60a_0
- grpcio=1.42.0=py38hce63b2e_0
- hhsuite=3.3.0=py38pl5262hc37a69a_2
- hmmer=3.3.2=h1b792b2_1
- hydra-core=1.1.1=pyhd8ed1ab_0
- icu=68.1=h2531618_0
- idna=3.3=pyhd3eb1b0_0
- importlib-metadata=4.11.3=py38h578d9bd_0
- importlib_metadata=4.11.3=hd8ed1ab_0
- importlib_resources=5.6.0=pyhd8ed1ab_0
- intel-openmp=2021.4.0=h06a4308_3561
- jpeg=9d=h7f8727e_0
- krb5=1.19.2=hcc1bbae_0
- lame=3.100=h7b6447c_0
- lcms2=2.12=h3be6417_0
- ld_impl_linux-64=2.35.1=h7274673_9
- libbrotlicommon=1.0.9=h7f98852_5
- libbrotlidec=1.0.9=h7f98852_5
- libbrotlienc=1.0.9=h7f98852_5
- libcurl=7.78.0=h2574ce0_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=hcdb4288_3
- libfaiss=1.7.2=h2bc3f7f_0_cpu
- libffi=3.3=he6710b0_2
- libgcc-ng=9.3.0=h5101ec6_17
- libgomp=9.3.0=h5101ec6_17
- libiconv=1.15=h63c8f33_5
- libidn2=2.3.2=h7f8727e_0
- libnghttp2=1.43.0=h812cca2_0
- libpng=1.6.37=hbc83047_0
- libprotobuf=3.15.8=h780b84a_0
- libssh2=1.9.0=ha56f1ee_6
- libstdcxx-ng=9.3.0=hd4cf53a_17
- libtasn1=4.16.0=h27cfd23_0
- libthrift=0.14.1=he6d91bd_2
- libtiff=4.2.0=h85742a9_0
- libunistring=0.9.10=h27cfd23_0
- libutf8proc=2.6.1=h7f98852_0
- libuv=1.40.0=h7b6447c_0
- libwebp=1.2.2=h55f646e_0
- libwebp-base=1.2.2=h7f8727e_0
- lz4-c=1.9.3=h295c915_1
- markdown=3.3.6=pyhd8ed1ab_0
- mkl=2021.4.0=h06a4308_640
- mkl-service=2.4.0=py38h7f8727e_0
- mkl_fft=1.3.1=py38hd3c417c_0
- mkl_random=1.2.2=py38h51133e4_0
- mmseqs2=13.45111=h95f258a_1
- msgpack-python=1.0.2=py38h1fd1430_1
- multidict=5.2.0=py38h7f8727e_2
- multiprocess=0.70.15=py38h06a4308_0
- ncurses=6.3=h7f8727e_2
- nettle=3.7.3=hbbd107a_1
- networkx=3.1=pyhd8ed1ab_0
- numexpr=2.8.1=py38h6abb31d_0
- numpy=1.21.2=py38h20f2e39_0
- numpy-base=1.21.2=py38h79a1101_0
- oauthlib=3.2.0=pyhd8ed1ab_0
- omegaconf=2.1.1=py38h578d9bd_1
- openh264=2.1.1=h4ff587b_0
- openssl=1.1.1w=h7f8727e_0
- orc=1.6.7=heec2584_1
- p-tqdm=1.4.0=pyhd8ed1ab_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.3.1=py38h8c16a72_0
- pandas-flavor=0.2.0=py_0
- parquet-cpp=1.5.1=2
- pathos=0.3.2=pyhd8ed1ab_0
- pathtools=0.1.2=py_1
- perl=5.26.2=h36c2ea0_1008
- pillow=9.0.1=py38h22f2fdc_0
- pip=21.2.4=py38h06a4308_0
- pox=0.3.4=pyhd8ed1ab_0
- ppft=1.7.6.8=pyhd8ed1ab_0
- promise=2.3=py38h578d9bd_5
- protobuf=3.15.8=py38h709712a_0
- psutil=5.8.0=py38h27cfd23_1
- pyarrow=4.0.0=py38hc9229eb_1_cpu
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.21=pyhd3eb1b0_0
- pydeprecate=0.3.2=pyhd8ed1ab_0
- pyjwt=2.3.0=pyhd8ed1ab_1
- pyopenssl=22.0.0=pyhd3eb1b0_0
- pyparsing=3.0.7=pyhd8ed1ab_0
- pysocks=1.7.1=py38h06a4308_0
- python=3.8.12=h12debd9_0
- python-dateutil=2.8.2=pyhd3eb1b0_0
- python_abi=3.8=2_cp38
- pytorch=1.11.0=py3.8_cuda11.3_cudnn8.2.0_0
- pytorch-lightning=1.5.10=pyhd8ed1ab_0
- pytorch-mutex=1.0=cuda
- pytz=2021.3=pyhd3eb1b0_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=5.4.1=py38h497a2fe_0
- re2=2021.04.01=h9c3ff4c_0
- readline=8.1.2=h7f8727e_1
- requests=2.27.1=pyhd3eb1b0_0
- requests-oauthlib=1.3.1=pyhd8ed1ab_0
- rsa=4.8=pyhd8ed1ab_0
- s2n=1.0.10=h9b69904_0
- sentry-sdk=1.5.8=pyhd8ed1ab_0
- seqkit=2.8.1=h9ee0642_0
- setproctitle=1.2.2=py38h497a2fe_0
- setuptools=58.0.4=py38h06a4308_0
- shortuuid=1.0.8=py38h578d9bd_0
- six=1.16.0=pyhd3eb1b0_1
- smmap=3.0.5=pyh44b312d_0
- snappy=1.1.8=he1b5a44_3
- sqlite=3.38.0=hc218d9a_0
- tensorboard=2.8.0=pyhd8ed1ab_1
- tensorboard-data-server=0.6.0=py38h2b97feb_0
- tensorboard-plugin-wit=1.8.1=pyhd8ed1ab_0
- termcolor=1.1.0=py_2
- tk=8.6.11=h1ccaba5_0
- torchmetrics=0.7.3=pyhd8ed1ab_0
- torchvision=0.12.0=py38_cu113
- tqdm=4.63.1=pyhd8ed1ab_0
- typing-extensions=4.1.1=hd3eb1b0_0
- typing_extensions=4.1.1=pyh06a4308_0
- urllib3=1.26.8=pyhd3eb1b0_0
- wandb=0.12.11=pyhd8ed1ab_0
- werkzeug=2.0.3=pyhd8ed1ab_1
- wget=1.20.1=h20c2e04_0
- wheel=0.37.1=pyhd3eb1b0_0
- xarray=2022.3.0=pyhd8ed1ab_0
- xz=5.2.5=h7b6447c_0
- yaml=0.2.5=h516909a_0
- yarl=1.6.3=py38h27cfd23_0
- yaspin=2.1.0=pyhd8ed1ab_0
- zipp=3.7.0=pyhd8ed1ab_1
- zlib=1.2.11=h7f8727e_4
- zstd=1.4.9=haebb681_0