ci-nc.yml

name: MODFLOW 6 continuous integration
on:
  push:
    branches:
      - netcdf-build-test-ci
    paths-ignore:
      - '**.md'
      - '**.pdf'
      - '**.tex'
      - '**.jpg'
      - '**.jpeg'
      - '**.png'
      - '**.bbl'
      - '**.bib'
      - 'doc/**.dat'
      - 'doc/**.ipynb'
      - 'doc/**.py'
      - 'doc/**.sh'
      - 'doc/**.xlsx'
      - '.hpc/**'
  pull_request:
    branches:
      - master
      - develop
    paths-ignore:
      - '**.md'
      - '**.pdf'
      - '**.tex'
      - '**.jpg'
      - '**.jpeg'
      - '**.png'
      - '**.bbl'
      - '**.bib'
      - 'doc/**.dat'
      - 'doc/**.ipynb'
      - 'doc/**.py'
      - 'doc/**.sh'
      - 'doc/**.xlsx'
      - '.hpc/**'
jobs:
  parallel_test:
    name: Parallel testing
#    needs:
#      - lint
#      - build
#      - smoke_test
    runs-on: ${{ matrix.os }}
    strategy:
      fail-fast: false
      matrix:
        os: [ ubuntu-22.04, macos-12 ] #, windows-2022 ]
    defaults:
      run:
        shell: bash -l {0}
    env:
      FC: gfortran
      GCC_V: 12
    steps:

      - name: Checkout modflow6
        uses: actions/checkout@v4
        with:
          path: modflow6

      - name: Setup MSYS2
        if: runner.os == 'Windows'
        uses: msys2/setup-msys2@v2
        with:
          update: true
          install: |
            git
            make
            mingw-w64-x86_64-gcc
            mingw-w64-x86_64-python
            mingw-w64-x86_64-python-pip
            mingw-w64-x86_64-python-pytest

      - name: Setup MPI
        if: runner.os == 'Windows'
        uses: mpi4py/setup-mpi@v1
        with:
          mpi: msmpi

      - name: Setup GNU Fortran ${{ env.GCC_V }}
        uses: fortran-lang/setup-fortran@v1
        with:
          compiler: gcc
          version: ${{ env.GCC_V }}

      - name: Cache PETSc
        id: cache-petsc
        uses: actions/cache@v3
        with:
          path: petsc
          key: ${{ runner.os }}-petsc

      - name: Clone PETSc
        if: runner.os != 'Windows' && steps.cache-petsc.outputs.cache-hit != 'true'
        run: git clone -b release https://gitlab.com/petsc/petsc.git petsc

      - name: Download PETSc
        if: runner.os == 'Windows'
        run: |
          curl https://ftp.mcs.anl.gov/pub/petsc/release-snapshots/petsc-3.18.4.tar.gz -O -J
          mkdir petsc
          tar -xzf petsc-3.18.4.tar.gz -C petsc --strip-components=1

      - name: Configure environment
        if: runner.os == 'Linux'
        run: |
          echo "PKG_CONFIG_PATH=$GITHUB_WORKSPACE/petsc/linux-gnu/lib/pkgconfig" >> $GITHUB_ENV
          echo "$GITHUB_WORKSPACE/petsc/linux-gnu/bin" >> $GITHUB_PATH

      - name: Configure environment
        if: runner.os == 'macOS'
        run: |
          echo "PKG_CONFIG_PATH=$GITHUB_WORKSPACE/petsc/arch-darwin-gcc-debug/lib/pkgconfig" >> $GITHUB_ENV
          echo "$GITHUB_WORKSPACE/petsc/arch-darwin-gcc-debug/bin" >> $GITHUB_PATH

      - name: Configure PETSc
        if: runner.os == 'Linux'
        working-directory: petsc
        run: |
          sudo ./configure PETSC_ARCH=linux-gnu --download-fblaslapack --download-openmpi
          sudo make all

      - name: Configure PETSc
        if: runner.os == 'macOS'
        working-directory: petsc
        run: |
          sudo ./configure PETSC_DIR="$GITHUB_WORKSPACE/petsc" PETSC_ARCH=arch-darwin-gcc-debug --download-fblaslapack --download-openmpi
          sudo make all

      - name: Configure PETSc
        if: runner.os == 'Windows'
        shell: msys2 {0}
        working-directory: petsc
        run: |
          pacman -Syu
          pacman -Sy --noconfirm autoconf automake-wrapper bison bsdcpio make git \
            mingw-w64-x86_64-toolchain patch python flex \
            pkg-config pkgfile tar unzip mingw-w64-x86_64-cmake \
            mingw-w64-x86_64-msmpi mingw-w64-x86_64-openblas mingw-w64-x86_64-jq
          /usr/bin/python ./configure --with-mpiexec='/C/Program\ Files/Microsoft\ MPI/Bin/mpiexec' --with-shared-libraries=0
          make all

      - name: Setup Micromamba
        uses: mamba-org/setup-micromamba@v1
        with:
          environment-file: modflow6/environment.yml
          create-args: >-
            netcdf-fortran
          init-shell: >-
            bash
            powershell
          cache-environment: true
          cache-downloads: true

      - name: Edit netcdf-fortran.pc
        working-directory: modflow6
        run: |
          if [ "$RUNNER_OS" == "Linux" ]; then
            sed -i "s|libdir=/home/runner/micromamba/envs/modflow6//home/runner/micromamba/envs/modflow6/lib|libdir=/home/runner/micromamba/envs/modflow6/lib|g" /home/runner/micromamba/envs/modflow6/lib/pkgconfig/netcdf-fortran.pc
          elif [ "$RUNNER_OS" == "macOS" ]; then
            sed -i '' -e "s|libdir=/Users/runner/micromamba/envs/modflow6//Users/runner/micromamba/envs/modflow6/lib|libdir=/Users/runner/micromamba/envs/modflow6/lib|g" /Users/runner/micromamba/envs/modflow6/lib/pkgconfig/netcdf-fortran.pc
          fi

      - name: Build modflow6
        working-directory: modflow6
        run: |
          meson setup builddir -Ddebug=false -Dextended=true --prefix=$(pwd) --libdir=bin
          meson install -C builddir
          meson test --verbose --no-rebuild -C builddir

      - name: Show Meson logs
        if: failure()
        working-directory: modflow6
        run: cat builddir/meson-logs/meson-log.txt

      - name: Update flopy
        working-directory: modflow6/autotest
        run: python update_flopy.py

      - name: Get executables
        working-directory: modflow6/autotest
        env:
          GITHUB_TOKEN: ${{ github.token }}
        run: pytest -v --durations 0 get_exes.py

      - name: Test netcdf build
        working-directory: modflow6/autotest
        env:
          REPOS_PATH: ${{ github.workspace }}
        run: |
          pytest test_gwf_chd01.py --keep temp
          grep -Fx "    NetCDF, network Common Data Form software library" temp/test_mf6model[chd01]0/mfsim.lst
          grep -Fx "    NetCDF, network Common Data Form software library" temp/test_*chd01*/mfsim.lst

      - name: Test programs (parallel)
        working-directory: modflow6/autotest
        env:
          REPOS_PATH: ${{ github.workspace }}
        run: |
          branch="${{ github.ref_name }}"
          marker="not large"
          markers=$([ "$branch" == "master" ] && echo "$marker and not developmode" || echo "$marker")
          pytest -v -n auto --parallel --durations 0 -m "$markers"