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No such file or directory: 'VCF_dict_tmp' #86

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PengZhangJHU opened this issue Nov 13, 2019 · 2 comments
Open

No such file or directory: 'VCF_dict_tmp' #86

PengZhangJHU opened this issue Nov 13, 2019 · 2 comments

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@PengZhangJHU
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I'm using MToolBox v1.2, and when I tested on the /test/sim_data that came with the download the software, I got the following error. I saw this error has come up in earlier posts but don't find a solution to it. Anyone has suggestions? Thank you!

MToolBox.sh -i test_config.sh &> sim_data_run.log

ASSEMBLING MT GENOMES WITH ASSEMBLEMTGENOME...

WARNING: values of tail < 5 are deprecated and will be replaced with 5

Human genome indices do not exist. Run samtools faidx fist.

GENERATING VCF OUTPUT...

Traceback (most recent call last):
File "/mnt/research/statgen/mitoAnalyzer/MToolBox-master/MToolBox/VCFoutput.py", line 36, in
VCF_dict = ast.literal_eval(open('VCF_dict_tmp', 'r').read())
IOError: [Errno 2] No such file or directory: 'VCF_dict_tmp'

@smukh18
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smukh18 commented Jan 21, 2020

How was this solved?

@jerkonej
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I found the issue to be with the NcursesW library installation. when installed separately and re-installed MToolBox, everything works fine.

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3 participants