diff --git a/DESCRIPTION b/DESCRIPTION index 3fa3135..80885e1 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: DQAstats Title: Core Functions for Data Quality Assessment -Version: 0.3.5 -Date: 2024-06-05 +Version: 0.3.6 +Date: 2024-11-27 Authors@R: c( person("Lorenz A.", "Kapsner", , "lorenz.kapsner@gmail.com", role = c("cre", "aut"), comment = c(ORCID = "0000-0003-1866-860X")), @@ -45,4 +45,4 @@ Encoding: UTF-8 Roxygen: list(markdown = TRUE) SystemRequirements: Quarto command line tools (https://github.com/quarto-dev/quarto-cli). -RoxygenNote: 7.3.1 +RoxygenNote: 7.3.2 diff --git a/NAMESPACE b/NAMESPACE index 745f96f..5775219 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -4,7 +4,6 @@ export(atemp_plausi_results) export(check_date_restriction_requirements) export(completeness) export(create_helper_vars) -export(create_markdown) export(create_pdf_report) export(data_loading) export(descriptive_results) diff --git a/NEWS.md b/NEWS.md index 4a16ff1..851a232 100644 --- a/NEWS.md +++ b/NEWS.md @@ -2,503 +2,536 @@ # DQAstats NEWS -## Unreleased (2024-06-04) +## Unreleased (2024-11-27) + +#### Bug fixes + +- first try to fix issue with vignette on macosx cran runners + ([c590870](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/c590870da6de4293dc16d15e263338dddac91379)) + +#### Other changes + +- updated news, descr and readme + ([cc70346](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/cc70346db9d92f572e37545def5d66982997e9f3)) +- merged development into trino + ([6c7e592](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6c7e592240273f2c18a8c7b09dbb81eece651a08)) +- merged fix-quarto-pdf into trino + ([0d4b012](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/0d4b012a750425c24da7f350f90a3014cf40392e)) +- cleaning up + ([a5bcbed](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a5bcbedbe566ca566e9749985dc098b19e4d3402)) +- updated desc and news md, fixed typo + ([919018f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/919018f4d90f0b8bcbeef62b6f42b8dd5cd0c951)) +- merged fix for quarto pdf + ([6aaae8d](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6aaae8dac4584e7e1affaa9c5e875bceccec31cf)) +- fix pdf generation with quarto + ([3cc3ab4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/3cc3ab4b57ab23e90d96c2141918855fb90b6ce5)) +- removed deprecated function create_markdown + ([4c9c47d](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/4c9c47d86189002587da0fbdf13a77573ebd0551)) +- updated gitignore + ([e53ad68](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e53ad68ea2218f7a598cf1e30da753ff60406a8a)) + +Full set of changes: +[`v0.3.5...cc70346`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.3.5...cc70346) + +## v0.3.5 (2024-06-05) #### New features - moving pdf-creation to quarto - ([5391f1b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5391f1b580d438e33098d4c3625ab1d67fadc5e5)) + ([5391f1b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5391f1b580d438e33098d4c3625ab1d67fadc5e5)) #### Bug fixes - fixed issue with copying of final pdf-report - ([008dc28](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/008dc28a2df4bc8a4f067a28a2ea0e1e436e88a6)) + ([008dc28](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/008dc28a2df4bc8a4f067a28a2ea0e1e436e88a6)) - specifing min required version for quarto - ([9cc7a55](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9cc7a555dfe21396ce76530f25aa103e788ef0fe)) + ([9cc7a55](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9cc7a555dfe21396ce76530f25aa103e788ef0fe)) - updated code; moved template rmd to qmd - ([b9a7530](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b9a7530d6c21d1d86eddb84d93f4ce1f152b7591)) + ([b9a7530](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b9a7530d6c21d1d86eddb84d93f4ce1f152b7591)) - rmd file - ([ae4f067](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ae4f06740799745ac7f39cc0863bddbc06bfbfbd)) + ([ae4f067](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ae4f06740799745ac7f39cc0863bddbc06bfbfbd)) - no more filter error - ([34a9bc4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/34a9bc4769d52d0216d7efe753494ddd7fc94278)) + ([34a9bc4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/34a9bc4769d52d0216d7efe753494ddd7fc94278)) - fixed dplyr residual stuff - ([8f390a5](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8f390a58c13e23d7a48f203904f988a67bac8099)) + ([8f390a5](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8f390a58c13e23d7a48f203904f988a67bac8099)) - fixed error in time_compare - ([83ba875](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/83ba8757b8f1c9eb267ebf47acace4c146b673ba)) + ([83ba875](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/83ba8757b8f1c9eb267ebf47acace4c146b673ba)) - fixed utils::head declaration - ([c0febd0](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/c0febd0fee6f576110655cc703ebee593d96c031)) + ([c0febd0](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/c0febd0fee6f576110655cc703ebee593d96c031)) - convert Date to character, update Readme - ([3789f66](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/3789f664f5a5cffe5372ca71f5d2a066857f3e30)) + ([3789f66](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/3789f664f5a5cffe5372ca71f5d2a066857f3e30)) #### Tests - remove checking for md/tex - ([5f997e5](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5f997e533b17ec40c2ea52c26aa4402a345e3252)) + ([5f997e5](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5f997e533b17ec40c2ea52c26aa4402a345e3252)) - fixed unit tests - ([10209f4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/10209f4d37a5cc4893e0395cda4668bbc7ed3899)) + ([10209f4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/10209f4d37a5cc4893e0395cda4668bbc7ed3899)) #### CI - fixing pandoc issue in windows - ([ca7756f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ca7756f8b6b50d64627857de9f6160b844828fc3)) + ([ca7756f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ca7756f8b6b50d64627857de9f6160b844828fc3)) - moving to quarto in gha - ([01c0adb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/01c0adb42aa980843080604eac6000ce970b2f91)) + ([01c0adb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/01c0adb42aa980843080604eac6000ce970b2f91)) - installing bable-german - ([4b01a85](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/4b01a85411a9354156a6345160a6812471b0c716)) + ([4b01a85](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/4b01a85411a9354156a6345160a6812471b0c716)) - trying to fix rchecks - ([da91f32](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/da91f321fcbb805b74ab47c54828382fc4abf50d)) + ([da91f32](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/da91f321fcbb805b74ab47c54828382fc4abf50d)) - trying to fix latex issue - ([f3e7e1b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f3e7e1b96f9729220f33bac81c31c17903a102b6)) + ([f3e7e1b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f3e7e1b96f9729220f33bac81c31c17903a102b6)) - try java 11 - ([a77379c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/a77379cf46775f46997fd139cf756256cba8b145)) + ([a77379c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a77379cf46775f46997fd139cf756256cba8b145)) - try microsoft dist - ([bd54153](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/bd54153ed9a2687d6e2375a65eb9f48c0667d2e0)) + ([bd54153](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/bd54153ed9a2687d6e2375a65eb9f48c0667d2e0)) - added distribution to java config - ([d5957d7](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d5957d75be547840bbd2f014b73992a6d3bb6ddf)) + ([d5957d7](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d5957d75be547840bbd2f014b73992a6d3bb6ddf)) - minor fixes to get files working - ([c1f3b9e](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/c1f3b9e5e29414190c2572c82dc0ac2941ac987b)) + ([c1f3b9e](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/c1f3b9e5e29414190c2572c82dc0ac2941ac987b)) - fix github actions - ([d239468](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d23946896152c5ad39a0dca51b0da83b54912bb8)) + ([d239468](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d23946896152c5ad39a0dca51b0da83b54912bb8)) #### Other changes +- prepared cran-update + ([c2c33db](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/c2c33db5c67db6932701cc686c518b39f11023ed)) - reverted rv_list to rv again - ([f44a854](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f44a854c6b7e70ee23eb6baadde6ed55422c67b7)) + ([f44a854](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f44a854c6b7e70ee23eb6baadde6ed55422c67b7)) - removed as.list(rv) again - ([017bb49](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/017bb49ecdd01d60015137119c2612a6a90213a7)) + ([017bb49](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/017bb49ecdd01d60015137119c2612a6a90213a7)) - changed report-generation - ([ac07d40](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ac07d40f1145015051873ca08a0ea1590839b101)) + ([ac07d40](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ac07d40f1145015051873ca08a0ea1590839b101)) - merged both branches - ([7aa766f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/7aa766f0bf62f42c4e47ddcff775bfec74b42af6)) + ([7aa766f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/7aa766f0bf62f42c4e47ddcff775bfec74b42af6)) - fixed errors - ([8702985](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/870298524d5437a8896c128204acb85948e873ed)) + ([8702985](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/870298524d5437a8896c128204acb85948e873ed)) - re-introduced missing pdf-copying - ([4f6a7d5](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/4f6a7d52c78b005a9bf0d2ebbb6e5c4f4562807f)) + ([4f6a7d5](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/4f6a7d52c78b005a9bf0d2ebbb6e5c4f4562807f)) - fixed all changes that have not been merged before - ([d370e06](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d370e069d0c0cc1795ec54955a46aad24f9af27b)) + ([d370e06](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d370e069d0c0cc1795ec54955a46aad24f9af27b)) - added latest enhancements from dev-branch - ([55b011b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/55b011b27c8535f82f3fbecd89529b728ae15452)) + ([55b011b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/55b011b27c8535f82f3fbecd89529b728ae15452)) - updated dev-stuffs - ([50f0b51](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/50f0b517ca23937c2eef21a249dc7a5c0af2961d)) + ([50f0b51](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/50f0b517ca23937c2eef21a249dc7a5c0af2961d)) - updated tests - ([546ad57](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/546ad5769dc6b43b0764bf5ec6d2bb8fe1ac82ac)) + ([546ad57](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/546ad5769dc6b43b0764bf5ec6d2bb8fe1ac82ac)) - merged latest developments into colored_diff_summary - ([41da740](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/41da7405fa2fc981afe30d00c350a37c81cfcf69)) + ([41da740](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/41da7405fa2fc981afe30d00c350a37c81cfcf69)) - moved vignette engine to quarto - ([87defba](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/87defbae5715a2124638743b23ee3f87dcdd5b5d)) + ([87defba](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/87defbae5715a2124638743b23ee3f87dcdd5b5d)) - renamed create_markdown to create_pdf_report - ([dd26b08](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/dd26b08b0839ea6e2da1cf00c04239ddd7821a24)) + ([dd26b08](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/dd26b08b0839ea6e2da1cf00c04239ddd7821a24)) - updated automated generation of readme - ([9b286bc](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9b286bc2e8b7385097d79dc64583346511858df6)) + ([9b286bc](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9b286bc2e8b7385097d79dc64583346511858df6)) - added dqa-dqastats.wiki to ignore - ([3a80262](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/3a802627a211e634da214241c4cbb0166857a70d)) + ([3a80262](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/3a802627a211e634da214241c4cbb0166857a70d)) - updated desc and news.md - ([e0678bb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e0678bbdd334e547a9fc1f1c739af0a38fdb41ef)) + ([e0678bb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e0678bbdd334e547a9fc1f1c739af0a38fdb41ef)) - merged fixed ci into tc branch - ([090cd16](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/090cd16e92eee0b0ed185f4c75dbd518342691fc)) + ([090cd16](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/090cd16e92eee0b0ed185f4c75dbd518342691fc)) - merged latest changes into time_compare - ([1e57f52](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1e57f52d0ad675d410dba61229b64dc7b6418178)) + ([1e57f52](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1e57f52d0ad675d410dba61229b64dc7b6418178)) - get_timestamp_items to separate function - ([f59557a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f59557a50e440f30c6810b97d572331c74ea7646)) + ([f59557a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f59557a50e440f30c6810b97d572331c74ea7646)) - started with review - ([57a201a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/57a201a228401c3921a5917777e2136e34f612c4)) + ([57a201a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/57a201a228401c3921a5917777e2136e34f612c4)) - prep new dev-version - ([d1f2610](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d1f2610048a79b42b0a5036e12b25f87e3976d14)) + ([d1f2610](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d1f2610048a79b42b0a5036e12b25f87e3976d14)) Full set of changes: -[`v0.3.4...008dc28`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.3.4...008dc28) +[`v0.3.4...v0.3.5`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.3.4...v0.3.5) ## v0.3.4 (2024-04-04) #### Bug fixes - fixed issues in vignette - ([f67cb85](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f67cb85adf7493893a5530c2140122509819a544)) + ([f67cb85](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f67cb85adf7493893a5530c2140122509819a544)) - fixed vignette also for windows - ([76b45d5](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/76b45d563e015a43f80727562a89a9006cb50b37)) + ([76b45d5](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/76b45d563e015a43f80727562a89a9006cb50b37)) - using last working version of dataquier datasets - ([b30f7b0](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b30f7b011072d02ccbf42988f616facac843ec3c)) + ([b30f7b0](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b30f7b011072d02ccbf42988f616facac843ec3c)) #### CI - updated checkout tags for github actions - ([3470aeb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/3470aeb45d20d190127ec6865bba924fe07dc42e)) + ([3470aeb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/3470aeb45d20d190127ec6865bba924fe07dc42e)) #### Other changes - updated news.md - ([3fa8fc4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/3fa8fc4d77edc032da78439ac5cc961a31f2654a)) + ([3fa8fc4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/3fa8fc4d77edc032da78439ac5cc961a31f2654a)) - updated cran-comments - ([e7faf98](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e7faf98fd5278d98b09abc07e6c8bee396fe0f14)) + ([e7faf98](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e7faf98fd5278d98b09abc07e6c8bee396fe0f14)) - updated rocker image tag to `rocker/verse:4.3.2` - ([f7cdf21](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f7cdf211b020ca7aa83e783262041584e253ad6f)) + ([f7cdf21](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f7cdf211b020ca7aa83e783262041584e253ad6f)) - updated to latest changes - ([19a048c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/19a048c339232783b3507202f68872733cd8c9ed)) + ([19a048c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/19a048c339232783b3507202f68872733cd8c9ed)) - merged latest changes - ([1580fd1](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1580fd12f2ef9a8fa8ec14ed0bb3a5b8aabaa01b)) + ([1580fd1](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1580fd12f2ef9a8fa8ec14ed0bb3a5b8aabaa01b)) Full set of changes: -[`v0.3.3...v0.3.4`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.3.3...v0.3.4) +[`v0.3.3...v0.3.4`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.3.3...v0.3.4) ## v0.3.3 (2023-07-20) #### Bug fixes - set eval=FALSE for vignette on windows - ([502dcfb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/502dcfbc4f86f54a534300adefd83e6abd39fdaf)) + ([502dcfb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/502dcfbc4f86f54a534300adefd83e6abd39fdaf)) - solving cran issues - ([b1344f3](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b1344f32799b8b70a6813e940f64e84b1ccc3cf4)) + ([b1344f3](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b1344f32799b8b70a6813e940f64e84b1ccc3cf4)) - hot-fix to resolve cran errors - ([482ea46](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/482ea46623666f2a5fb1a0ff2c6394e1fb40d6e4)) + ([482ea46](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/482ea46623666f2a5fb1a0ff2c6394e1fb40d6e4)) - checking of empty restricting_date_format - ([a847ba2](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/a847ba201c002acecb5bfd118034e243529fa929)) + ([a847ba2](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a847ba201c002acecb5bfd118034e243529fa929)) - fixed typo - ([5490bf4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5490bf4d2df09135ef85198337681d24def2b04f)) + ([5490bf4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5490bf4d2df09135ef85198337681d24def2b04f)) - working on getting dates fixed for oracle - ([e3345cc](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e3345cc9c92c3507abf2c51001986e974868f3cf)) + ([e3345cc](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e3345cc9c92c3507abf2c51001986e974868f3cf)) - date-formatting for oracle - ([4398f89](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/4398f89a14422328ac08545012f1b5f4b0574e34)) + ([4398f89](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/4398f89a14422328ac08545012f1b5f4b0574e34)) - replace as also for no time filtering - ([d5a2444](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d5a24444b358a3ccb4bfeb3cff3f233177252994)) + ([d5a2444](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d5a24444b358a3ccb4bfeb3cff3f233177252994)) #### Docs - switched to building man pages with markdown - ([fc16321](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/fc1632195474eb128abdeba4eb5ccd5d3c674e82)) + ([fc16321](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/fc1632195474eb128abdeba4eb5ccd5d3c674e82)) #### Other changes - updated news.md - ([dbb16cb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/dbb16cb29c084281ebc73494792ca51eb4dff095)) + ([dbb16cb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/dbb16cb29c084281ebc73494792ca51eb4dff095)) - updated dev-version - ([91a749c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/91a749cf1232b86af3d499c60b3cbb06dfe68618)) + ([91a749c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/91a749cf1232b86af3d499c60b3cbb06dfe68618)) Full set of changes: -[`v0.3.2...v0.3.3`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.3.2...v0.3.3) +[`v0.3.2...v0.3.3`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.3.2...v0.3.3) ## v0.3.2 (2023-01-23) #### New features - do not read sqls from file if loaded elsewhere - ([e3e799b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e3e799b7a3d653c909330653f4f8640f0f19785f)) + ([e3e799b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e3e799b7a3d653c909330653f4f8640f0f19785f)) #### Refactorings - sql date restrictions now use between - ([5d492c1](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5d492c174b1fc0a4129c23ccad573075ce79790d)) + ([5d492c1](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5d492c174b1fc0a4129c23ccad573075ce79790d)) - namespace imports to zzz.r - ([8d8354f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8d8354f5f741b37685353305e3114a26b3ee8f71)) + ([8d8354f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8d8354f5f741b37685353305e3114a26b3ee8f71)) #### CI - fixed unit tests - ([04c53cc](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/04c53cce99f791766baddf98ad3137aa0e669006)) + ([04c53cc](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/04c53cce99f791766baddf98ad3137aa0e669006)) - fixed errors - ([9396a7d](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9396a7d7c6cceb55375b827e42425d417e8312c1)) + ([9396a7d](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9396a7d7c6cceb55375b827e42425d417e8312c1)) - fixing github actions with tic - ([6c7ae2f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/6c7ae2f3796f7ff87a4f4cd408a20a598a262829)) + ([6c7ae2f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6c7ae2f3796f7ff87a4f4cd408a20a598a262829)) - fixing gha (wip) - ([9dcbc32](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9dcbc3278c29501c9b16b3fccd492574afba9fc8)) + ([9dcbc32](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9dcbc3278c29501c9b16b3fccd492574afba9fc8)) - removed gitlab-ci in favor of github actions - ([2527c90](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/2527c9027823b4ada66d7899a168366f9f3d46d2)) + ([2527c90](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/2527c9027823b4ada66d7899a168366f9f3d46d2)) - added deps for devtools - ([92c63df](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/92c63df265ef8d2a4a09a5c8c9e47df41d6b385b)) + ([92c63df](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/92c63df265ef8d2a4a09a5c8c9e47df41d6b385b)) #### Other changes - updated cran errors url - ([763a983](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/763a983548b52a2ef63d453c9f8f6f35315493cd)) + ([763a983](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/763a983548b52a2ef63d453c9f8f6f35315493cd)) - updated description and news.md - ([567fce8](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/567fce8d4e8d300d5079aded2532d63b9866a15c)) + ([567fce8](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/567fce8d4e8d300d5079aded2532d63b9866a15c)) - updated news.md - ([9c1fde0](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9c1fde02a9613bf8d8e53e50f28af22af93a0b56)) + ([9c1fde0](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9c1fde02a9613bf8d8e53e50f28af22af93a0b56)) - updated news.md - ([b44da32](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b44da32ad6e55b03325758688e4b3b95d2656f00)) + ([b44da32](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b44da32ad6e55b03325758688e4b3b95d2656f00)) - better logging messages to understand origin of sql statements - ([fa8c4e2](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/fa8c4e2c955b642ccb390cc37d2762976f671069)) + ([fa8c4e2](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/fa8c4e2c955b642ccb390cc37d2762976f671069)) - updated rbuildignore - ([77a1e9c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/77a1e9c318e8046412c9c45373d0dbd9a208fb8c)) + ([77a1e9c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/77a1e9c318e8046412c9c45373d0dbd9a208fb8c)) - updated news.md - ([7bb425d](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/7bb425d4951f7e6c155e9d7d3b8f880e9b60f480)) + ([7bb425d](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/7bb425d4951f7e6c155e9d7d3b8f880e9b60f480)) - news.md now with autonewsmd package - ([025d3b9](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/025d3b942ccd8e1cb5ce1c407e915cfe06825a4e)) + ([025d3b9](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/025d3b942ccd8e1cb5ce1c407e915cfe06825a4e)) - updated descr - ([4130add](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/4130adde7eae47622b9829f47ed7ad60b9201102)) + ([4130add](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/4130adde7eae47622b9829f47ed7ad60b9201102)) Full set of changes: -[`v0.3.1...v0.3.2`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.3.1...v0.3.2) +[`v0.3.1...v0.3.2`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.3.1...v0.3.2) ## v0.3.1 (2022-06-27) #### Bug fixes - fixed wrong calculation of target-completness; closes #50 - ([60830d5](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/60830d5abb67ea03e03af0c6ee76e28ae4498f87)) + ([60830d5](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/60830d5abb67ea03e03af0c6ee76e28ae4498f87)) - fixed checking if plausibility checks are possible with subset of data elements - ([e7c9320](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e7c9320ce5fdced437a7d467533f0c8b73e78697)) + ([e7c9320](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e7c9320ce5fdced437a7d467533f0c8b73e78697)) - json-object to character for storing in pl-list - ([683a355](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/683a3551337f2d6578afe9d9213e276facfcedf3)) + ([683a355](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/683a3551337f2d6578afe9d9213e276facfcedf3)) #### Refactorings - failing if info from mdr is lacking for plausibilities - ([fc1d40c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/fc1d40c9b1ae753aa55035ebddf663ea7777d465)) + ([fc1d40c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/fc1d40c9b1ae753aa55035ebddf663ea7777d465)) #### Build - dizutils dependency to 0.1.1 - ([bb20c6d](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/bb20c6dd4b5a3fba8f2574f58204dd8c8a4ec2f7)) + ([bb20c6d](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/bb20c6dd4b5a3fba8f2574f58204dd8c8a4ec2f7)) #### Tests - new unit tests for datetime-restriction - ([876a026](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/876a0267842e910ec4b8ba183fccfa8dc88aaa23)) + ([876a026](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/876a0267842e910ec4b8ba183fccfa8dc88aaa23)) - added missing lintr dependency to suggests - ([ee98ebc](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ee98ebc265b52a6e2583d2c3075d55ae7bc9508a)) + ([ee98ebc](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ee98ebc265b52a6e2583d2c3075d55ae7bc9508a)) - added linting tests - ([89df2c7](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/89df2c7e4335137e930073386414fadcfff49ad4)) + ([89df2c7](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/89df2c7e4335137e930073386414fadcfff49ad4)) #### CI - updated gha 2 - ([9e3da23](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9e3da23ee00970c7c68070520e22651c27fcb058)) + ([9e3da23](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9e3da23ee00970c7c68070520e22651c27fcb058)) - updated gha - ([8972407](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8972407a09d803a3f95a25ec252841ece2b3780d)) + ([8972407](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8972407a09d803a3f95a25ec252841ece2b3780d)) #### Other changes - updated lintr - ([f95d2de](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f95d2dee793633d5b104b6667d1436e3f1bbedd7)) + ([f95d2de](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f95d2dee793633d5b104b6667d1436e3f1bbedd7)) - preparing next cran-release - ([ae09c62](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ae09c627343e37be004ed1a08a033abf424bb502)) + ([ae09c62](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ae09c627343e37be004ed1a08a033abf424bb502)) - added demo sitename.json - ([69a9706](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/69a9706a88f9652cd1c3463be935935b5e4e68b3)) + ([69a9706](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/69a9706a88f9652cd1c3463be935935b5e4e68b3)) - replaced “data system” with “database” - ([60655cd](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/60655cd410dfa33043e5d57a605d25d774bec663)) + ([60655cd](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/60655cd410dfa33043e5d57a605d25d774bec663)) - updated description - ([d85e4f6](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d85e4f603dde1549a154171cb615dc4dfe791e3f)) + ([d85e4f6](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d85e4f603dde1549a154171cb615dc4dfe791e3f)) - making json prettier - ([0498fee](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/0498fee83d3ca5285a9d88ef69abfc152041ef2d)) + ([0498fee](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/0498fee83d3ca5285a9d88ef69abfc152041ef2d)) - updating description and news.md - ([3fa87cb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/3fa87cbf2fed96fb67f17a84809503ccd47b67c4)) + ([3fa87cb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/3fa87cbf2fed96fb67f17a84809503ccd47b67c4)) Full set of changes: -[`v0.3.0...v0.3.1`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.3.0...v0.3.1) +[`v0.3.0...v0.3.1`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.3.0...v0.3.1) ## v0.3.0 (2022-05-19) #### New features - added logo - ([fb697c1](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/fb697c172f7a7561171a4fb28f147488d51fbe2e)) + ([fb697c1](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/fb697c172f7a7561171a4fb28f147488d51fbe2e)) - ‘no data available’ now available for conformance checks - ([94279d7](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/94279d7ffd38eff58ce06d3ed53a431f74eacf91)) + ([94279d7](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/94279d7ffd38eff58ce06d3ed53a431f74eacf91)) - added creation of temporal view to sql display - ([58f8775](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/58f8775ae6340e65eb36597486f7631ee0411c69)) + ([58f8775](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/58f8775ae6340e65eb36597486f7631ee0411c69)) - more flexibility to use read_mdr - ([c96a30c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/c96a30cb4c2da26a04d3c3cc99ae6e511152d2c0)) + ([c96a30c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/c96a30cb4c2da26a04d3c3cc99ae6e511152d2c0)) - now returning modified sql statements for pdf / gui-button - ([152bd52](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/152bd52d2378b377e38f3c75393c0e781505d14b)) + ([152bd52](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/152bd52d2378b377e38f3c75393c0e781505d14b)) - added new constraints functionality for datetime variables - ([04f8cf3](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/04f8cf30de50e9e766b3f23f024bc8e78081184b)) + ([04f8cf3](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/04f8cf30de50e9e766b3f23f024bc8e78081184b)) - adding functionality for datetime constraints (wip) - ([9752969](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9752969e11189fd6618e18af585022bc1ef5b171)) + ([9752969](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9752969e11189fd6618e18af585022bc1ef5b171)) #### Bug fixes - fixed rendering of report when datetime future checks present - ([a427c4a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/a427c4a1e6d031bf1ec179e44d9ade7bb7a6ca04)) + ([a427c4a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a427c4a1e6d031bf1ec179e44d9ade7bb7a6ca04)) - error with diztools::is.empty - ([867d659](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/867d659c5169524b7088eeceffc22895412efa98)) + ([867d659](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/867d659c5169524b7088eeceffc22895412efa98)) - fixed displaying of conformance results, when no data available to perform conformance checks - ([73eae27](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/73eae2713e92147a33f0551060ffe18503965842)) + ([73eae27](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/73eae2713e92147a33f0551060ffe18503965842)) - fixed recognition of empty data for datetime variables - ([e8f6c4f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e8f6c4fdf086997c060909dc9cedb459ffca4f52)) + ([e8f6c4f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e8f6c4fdf086997c060909dc9cedb459ffca4f52)) - fixed missing of view creation / deletion in displayed sqls - ([895d9b0](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/895d9b07c88856a70dccab03766f3bede3d216e1)) + ([895d9b0](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/895d9b07c88856a70dccab03766f3bede3d216e1)) - fixed issues when source_table_name included where-clause - ([e4dc982](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e4dc98243bd67a9ba10adc7c9caa0ce05c8921b6)) + ([e4dc982](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e4dc98243bd67a9ba10adc7c9caa0ce05c8921b6)) - only the first sql showed the view-creation sql. This is now fixed. - ([b69c716](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b69c71634c85a80b3db0e3a7464ec3ddf2e55644)) + ([b69c716](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b69c71634c85a80b3db0e3a7464ec3ddf2e55644)) - added all view creations to display-sql where only the last one was - ([0310356](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/03103563646566f07d1c1c6c03ec317ddcb0f0f6)) + ([0310356](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/03103563646566f07d1c1c6c03ec317ddcb0f0f6)) - corrected hierarchy of outlist list to transform variables 2 - ([22b5c16](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/22b5c161ab4f602ba9cf89c77451e28eaf353c54)) + ([22b5c16](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/22b5c161ab4f602ba9cf89c77451e28eaf353c54)) - corrected hierarchy of outlist list to transform variables - ([090e7e4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/090e7e49eef510b481b532659463ecae2c7486ac)) + ([090e7e4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/090e7e49eef510b481b532659463ecae2c7486ac)) - replaced wrong argument to future::plan: ‘worker’ to ‘workers’ - ([b8a4e32](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b8a4e32e29d78b998e2c93f6602fa7c0167c2af6)) + ([b8a4e32](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b8a4e32e29d78b998e2c93f6602fa7c0167c2af6)) - fixed errors in vignette - ([74c8e0c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/74c8e0cd74f44fb9e6a86e8ef9e7f512ba62517e)) + ([74c8e0c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/74c8e0cd74f44fb9e6a86e8ef9e7f512ba62517e)) - better error handling for parallel backend - ([94727be](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/94727be6002082c71b736dfcbd66dbde68c351df)) + ([94727be](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/94727be6002082c71b736dfcbd66dbde68c351df)) - added on.exit for future plan - ([5b4113b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5b4113b460834958f21e04afe8e4d13e45b06ec8)) + ([5b4113b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5b4113b460834958f21e04afe8e4d13e45b06ec8)) - parallel=FALSE by default - ([d11943b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d11943b5c95709c12ff1ad7cfa833f6c7dc4ae1d)) + ([d11943b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d11943b5c95709c12ff1ad7cfa833f6c7dc4ae1d)) - sql statements to target system, if source=target - ([9f71b7f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9f71b7f175c83131fe67973da69c83ed70886c17)) + ([9f71b7f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9f71b7f175c83131fe67973da69c83ed70886c17)) #### Refactorings - formating value conformance results for reuse in dqagui - ([a1e0f97](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/a1e0f974a9645a330b67cee7fd64b45d9dd8a2e4)) + ([a1e0f97](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a1e0f974a9645a330b67cee7fd64b45d9dd8a2e4)) - improved detection of missing datetime data - ([b6d78ad](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b6d78adecde3a7cd72083d048499416ba30197ac)) + ([b6d78ad](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b6d78adecde3a7cd72083d048499416ba30197ac)) - added ‘no data available’ category for etl checks - ([23c6632](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/23c6632afc9eb200b7f627ab86015b7db5967f42)) + ([23c6632](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/23c6632afc9eb200b7f627ab86015b7db5967f42)) - enhanced formatting of displayed sqls - ([6b10231](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/6b1023165d89211e05e3100308a3729916dbbf39)) + ([6b10231](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6b1023165d89211e05e3100308a3729916dbbf39)) #### Tests - removed contexts - ([64377bf](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/64377bf9423b813d4f4a95944f337f2d8c3cc029)) + ([64377bf](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/64377bf9423b813d4f4a95944f337f2d8c3cc029)) - fixed unittest for new mdr - ([5884ddc](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5884ddce6a2d8a02f3183247ca182bd11c9613f3)) + ([5884ddc](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5884ddce6a2d8a02f3183247ca182bd11c9613f3)) #### Docs - replace missing definition with informatino - ([ffa1e7b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ffa1e7b7446103c8e61cb55a19895011073aecdc)) + ([ffa1e7b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ffa1e7b7446103c8e61cb55a19895011073aecdc)) - removed dataquier as soft dependency; now loading datasets directly from url in vignette - ([bad2da4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/bad2da4d6487bec70a86e34bcc3a22b22a121f77)) + ([bad2da4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/bad2da4d6487bec70a86e34bcc3a22b22a121f77)) - added wiki-page for gui to vignette - ([f4339c8](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f4339c8fa82179d01fa23a273968e391f20d1422)) + ([f4339c8](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f4339c8fa82179d01fa23a273968e391f20d1422)) - fixed wrong paths in vignette - ([4c18db2](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/4c18db259e1c9984daf7bda4334612e9f8f6a80e)) + ([4c18db2](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/4c18db259e1c9984daf7bda4334612e9f8f6a80e)) - update vignette - ([767a677](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/767a6777dc82715b28acc0350d0a8dad27ceadef)) + ([767a677](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/767a6777dc82715b28acc0350d0a8dad27ceadef)) - adding vignette that analyzes dataquier ship-dataset - ([b92d55a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b92d55a8fe8f2f21446ae9b9fe80d329922ebb8e)) + ([b92d55a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b92d55a8fe8f2f21446ae9b9fe80d329922ebb8e)) #### Other changes - preparing new cran release v0.3.0 - ([288a429](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/288a42953876e970e46f7c1c429f8b9ac3b66c1f)) + ([288a429](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/288a42953876e970e46f7c1c429f8b9ac3b66c1f)) - updated description / news.md - ([b097bcb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b097bcba809f4151e7ca7807a2e51430a4baa437)) + ([b097bcb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b097bcba809f4151e7ca7807a2e51430a4baa437)) - removed unnecessary paste - ([85c3866](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/85c38660ecbed1a72c0a8105e2b9a48b4caf170a)) + ([85c3866](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/85c38660ecbed1a72c0a8105e2b9a48b4caf170a)) - updated version, news.md, etc. - ([603897e](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/603897e75b72575737139f61c4704d933cf11578)) + ([603897e](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/603897e75b72575737139f61c4704d933cf11578)) - added linebreake after sql-where - ([15921fc](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/15921fc6eff5cd1e7d34e97f9bba73c0b2ec1dc5)) + ([15921fc](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/15921fc6eff5cd1e7d34e97f9bba73c0b2ec1dc5)) - function create_markdown to extra file - ([4e565f0](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/4e565f0fff752c30507e3cdcdd12fd2a90359d2d)) + ([4e565f0](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/4e565f0fff752c30507e3cdcdd12fd2a90359d2d)) - updated news.md - ([c8dae31](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/c8dae312d837f04ce3e1844783b795e22306add5)) + ([c8dae31](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/c8dae312d837f04ce3e1844783b795e22306add5)) - updated news.md - ([1e17de9](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1e17de931084e6ee8c1a23c53ad983fc0a3091fc)) + ([1e17de9](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1e17de931084e6ee8c1a23c53ad983fc0a3091fc)) - added diztools version to logging - ([6d94f8e](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/6d94f8effc3b0e04dfa0e09a48e778243b51c616)) + ([6d94f8e](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6d94f8effc3b0e04dfa0e09a48e778243b51c616)) - updated package metadata and news.md - ([3402dc7](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/3402dc787ac446cc6e2afa2d58ac017727a57100)) + ([3402dc7](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/3402dc787ac446cc6e2afa2d58ac017727a57100)) - updated news.md - ([f76c07c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f76c07c748f5746bec9a1f0eee6f625bc643207c)) + ([f76c07c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f76c07c748f5746bec9a1f0eee6f625bc643207c)) - updated news.md; fixed git config to work with auto-changelog again - ([e9bbed7](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e9bbed7b7a08ddeaca7706c7299550dfc4f14178)) + ([e9bbed7](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e9bbed7b7a08ddeaca7706c7299550dfc4f14178)) - update debugging.info - ([90d2f32](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/90d2f32cdf2badcf3bda01fd27cb390b95140962)) + ([90d2f32](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/90d2f32cdf2badcf3bda01fd27cb390b95140962)) - updated debugging info - ([6b4917c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/6b4917c6900e36bd0133ce628e925a8ace24701e)) + ([6b4917c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6b4917c6900e36bd0133ce628e925a8ace24701e)) - removed comments from display sql - ([ce0dd47](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ce0dd47c74b32095904f73ff9a0067c214351886)) + ([ce0dd47](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ce0dd47c74b32095904f73ff9a0067c214351886)) - merged development - ([fc09efc](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/fc09efcf583f2f1c6a6ebfd100055400927ae9b8)) + ([fc09efc](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/fc09efcf583f2f1c6a6ebfd100055400927ae9b8)) - extened SQL hints in display message - ([23d8d9d](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/23d8d9d7199789e733a87543d2a7a0332a24c1d2)) + ([23d8d9d](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/23d8d9d7199789e733a87543d2a7a0332a24c1d2)) - updated news.md - ([8c24f8a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8c24f8aebb30a90d21586310940df182434454c6)) + ([8c24f8a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8c24f8aebb30a90d21586310940df182434454c6)) - updated news.md - ([8ebda0a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8ebda0a52baa0667b52f855c594daef4f42a1eec)) + ([8ebda0a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8ebda0a52baa0667b52f855c594daef4f42a1eec)) - updated news - ([d7bbbe6](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d7bbbe670f7b70e7090acf2b50458052702c0b07)) + ([d7bbbe6](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d7bbbe670f7b70e7090acf2b50458052702c0b07)) - added feedback msg to error - ([ba13828](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ba13828057dd1f8246586eb344ce0e491c27a318)) + ([ba13828](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ba13828057dd1f8246586eb344ce0e491c27a318)) - updated cran comments - ([e179ddd](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e179ddd3be76028a7e6a4cc7f852729bb7ecaa82)) + ([e179ddd](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e179ddd3be76028a7e6a4cc7f852729bb7ecaa82)) - added unname after ncores - ([9b9ab35](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9b9ab35dc4fd0823dcd0947cd164b55b1e9fbca9)) + ([9b9ab35](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9b9ab35dc4fd0823dcd0947cd164b55b1e9fbca9)) - outscourced dqagui deployment to dqagui - ([1aa545b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1aa545b4d1a9c85114f22ac9e5d3118bca05b13b)) + ([1aa545b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1aa545b4d1a9c85114f22ac9e5d3118bca05b13b)) - added dqastats and dqagui docker-compse files - ([4215868](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/421586829a561c4414b8490c00443321152b1402)) + ([4215868](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/421586829a561c4414b8490c00443321152b1402)) - added dqagui image deployment - ([ef5c249](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ef5c2493685ef4fe24c6c6bf7b73ca1bf7f99498)) + ([ef5c249](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ef5c2493685ef4fe24c6c6bf7b73ca1bf7f99498)) - fixed typo in vignette - ([1f00aa1](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1f00aa191d18edfe4335b44e18c6fda5badd4131)) + ([1f00aa1](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1f00aa191d18edfe4335b44e18c6fda5badd4131)) - updated news.md - ([4098434](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/409843444f1f08341736e2f54d06a4f6b7a5b0f8)) + ([4098434](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/409843444f1f08341736e2f54d06a4f6b7a5b0f8)) - fixed localhost url in vignette - ([55c9210](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/55c9210f4b03b6c24589187e9aafb0c0abb7f0be)) + ([55c9210](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/55c9210f4b03b6c24589187e9aafb0c0abb7f0be)) - removed unnecessary columns from example mdr - ([3579cd6](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/3579cd61c0aecefef7db6033da82128917abee94)) + ([3579cd6](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/3579cd61c0aecefef7db6033da82128917abee94)) Full set of changes: -[`v0.2.6...v0.3.0`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.2.6...v0.3.0) +[`v0.2.6...v0.3.0`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.2.6...v0.3.0) ## v0.2.6 (2022-03-02) #### Bug fixes - renaming data.table columns when modified by sql - ([708fd4c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/708fd4c58f3b837ca86488e7045151c2793546d2)) + ([708fd4c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/708fd4c58f3b837ca86488e7045151c2793546d2)) #### Other changes - updated news.md - ([de0b617](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/de0b617131cf4abb6fdaaaf473df25920ef8d71b)) + ([de0b617](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/de0b617131cf4abb6fdaaaf473df25920ef8d71b)) - updated version; news.md - ([156c08a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/156c08af623be54d46783c791a6155113d0db7aa)) + ([156c08a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/156c08af623be54d46783c791a6155113d0db7aa)) - added error message to agrepl command - ([60f8c8a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/60f8c8a3fe0ff6f70bbd440e9e2a8ef22c1128ac)) + ([60f8c8a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/60f8c8a3fe0ff6f70bbd440e9e2a8ef22c1128ac)) - updated readme to comply with diztools/dizutils - ([948c5d1](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/948c5d14acf5a865f668668913fb37d279026987)) + ([948c5d1](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/948c5d14acf5a865f668668913fb37d279026987)) - updated readme to comply with diztools - ([aa85f3c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/aa85f3c7208dc1dbdbe7e4f6fb90d9049031338f)) + ([aa85f3c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/aa85f3c7208dc1dbdbe7e4f6fb90d9049031338f)) - removed gitlab badges from readme - ([384b017](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/384b01727728e74c4dabe79ce1313d4f63cef028)) + ([384b017](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/384b01727728e74c4dabe79ce1313d4f63cef028)) Full set of changes: -[`v0.2.5...v0.2.6`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.2.5...v0.2.6) +[`v0.2.5...v0.2.6`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.2.5...v0.2.6) ## v0.2.5 (2022-02-21) #### Refactorings - switch to diztools dependency - ([9a6794c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9a6794cf5f86c8e560f63b93ffe833fcf70d2b2a)) + ([9a6794c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9a6794cf5f86c8e560f63b93ffe833fcf70d2b2a)) #### Other changes - updated dizutils version - ([1ab17f1](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1ab17f181f3d48bad9ca414b7e253caf8179f95e)) + ([1ab17f1](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1ab17f181f3d48bad9ca414b7e253caf8179f95e)) Full set of changes: -[`v0.2.4...v0.2.5`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.2.4...v0.2.5) +[`v0.2.4...v0.2.5`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.2.4...v0.2.5) ## v0.2.4 (2022-02-11) #### Other changes - preparing cran update - ([269ad14](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/269ad142e9e725908fa98a464a1c988e6b78a42b)) + ([269ad14](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/269ad142e9e725908fa98a464a1c988e6b78a42b)) - updated news.md, adaptions to new diztools/dizutils - ([c038c44](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/c038c4478cb0f201350253bc3c9e379a1b3d1121)) + ([c038c44](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/c038c4478cb0f201350253bc3c9e379a1b3d1121)) - updated news.md and description - ([f6b315f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f6b315f668dc250bb267511e95301bcd27b8b015)) + ([f6b315f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f6b315f668dc250bb267511e95301bcd27b8b015)) - some revisions to file path handling to avoid warnings - ([6b57449](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/6b574492dffa102a3b61a306e7ee0e99f863e7a3)) + ([6b57449](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6b574492dffa102a3b61a306e7ee0e99f863e7a3)) - updated news.md - ([90725c2](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/90725c273e108b581187091f7af6c9ecd0896db9)) + ([90725c2](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/90725c273e108b581187091f7af6c9ecd0896db9)) Full set of changes: -[`v0.2.3...v0.2.4`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.2.3...v0.2.4) +[`v0.2.3...v0.2.4`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.2.3...v0.2.4) ## v0.2.3 (2022-02-04) @@ -506,467 +539,467 @@ Full set of changes: - added datamap variables; updated tests accordingly; added unique plausi check irregularity - ([cf384a6](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/cf384a6550071bb8b3a0844a0d04a3c99f9672d4)) + ([cf384a6](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/cf384a6550071bb8b3a0844a0d04a3c99f9672d4)) - updated docker image - ([15c18a8](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/15c18a8bf313034700de639e8d952bba65c01530)) + ([15c18a8](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/15c18a8bf313034700de639e8d952bba65c01530)) - added demo `email.yml` file - ([907cd24](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/907cd24fd65490dc336b7019bafd9970de69f3e9)) + ([907cd24](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/907cd24fd65490dc336b7019bafd9970de69f3e9)) - removed e1071 dependency; expect value_set to be array - ([ebfa59b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ebfa59ba620a3c3afe7e50be1c967e1b468ce226)) + ([ebfa59b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ebfa59ba620a3c3afe7e50be1c967e1b468ce226)) #### Bug fixes - fallback in csv path extraction to handed over variable - ([5dee04e](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5dee04e2a947b8c0c96bd0c2a9353683c1d14fc5)) + ([5dee04e](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5dee04e2a947b8c0c96bd0c2a9353683c1d14fc5)) #### Tests - deleting logfiles after each test - ([123c172](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/123c17253fbe13b96085c1c843e14404e2ecb4f7)) + ([123c172](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/123c17253fbe13b96085c1c843e14404e2ecb4f7)) - adapt checks to MDR columns - ([31562c8](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/31562c82b06f4f4644f649167e8f5b897d1d17bc)) + ([31562c8](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/31562c82b06f4f4644f649167e8f5b897d1d17bc)) #### Docs - updated documentation - ([59f51ac](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/59f51ac578adb138c1233d0f6b423e9478bbe3fb)) + ([59f51ac](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/59f51ac578adb138c1233d0f6b423e9478bbe3fb)) - updated readme - ([00402d2](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/00402d2ff03bb6fea471eaa664d427d6754b874e)) + ([00402d2](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/00402d2ff03bb6fea471eaa664d427d6754b874e)) - restructured files and docs - ([083442d](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/083442de70b2d08d41f24ea4b8d8feb5a6a97b38)) + ([083442d](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/083442de70b2d08d41f24ea4b8d8feb5a6a97b38)) - updated `NEWS.md` - ([06f8e91](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/06f8e913602d929bb712055a4091142828fcbf59)) + ([06f8e91](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/06f8e913602d929bb712055a4091142828fcbf59)) #### Other changes - wrap examples into dont-test due to long runtime on cran - ([a588fa3](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/a588fa35aeabfd0f33914ecc1a49b80c41a45fcf)) + ([a588fa3](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a588fa35aeabfd0f33914ecc1a49b80c41a45fcf)) - updated rbuildignore, gitignore, news.md - ([2f478eb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/2f478eb3bca29ab12940188c35822d42a15d5a14)) + ([2f478eb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/2f478eb3bca29ab12940188c35822d42a15d5a14)) - updated description and news.md - ([cf545bb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/cf545bb8a034c47b82f9bc5e34935bb353ee51c8)) + ([cf545bb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/cf545bb8a034c47b82f9bc5e34935bb353ee51c8)) - updated version for cran submission - ([9b19b3e](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9b19b3e1f199d49e56b5e06841507dd90084ffe2)) + ([9b19b3e](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9b19b3e1f199d49e56b5e06841507dd90084ffe2)) - updated news.md; .rbuildignore - ([a3e9060](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/a3e90600537a69adc9ce14830b9ee6460adb7a35)) + ([a3e9060](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a3e90600537a69adc9ce14830b9ee6460adb7a35)) - updated date range in license statements - ([b10d53b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b10d53b0fab173bc0dac45e77529dcf7ee03522d)) + ([b10d53b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b10d53b0fab173bc0dac45e77529dcf7ee03522d)) - added env var content to logging msg - ([936c5b4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/936c5b43cc1b1547f9d14007e15e5a01fefb61f6)) + ([936c5b4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/936c5b43cc1b1547f9d14007e15e5a01fefb61f6)) - re-added roxygennote - ([50b616f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/50b616f91a2b56ff6ed38ca4bb058181182a4a2c)) + ([50b616f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/50b616f91a2b56ff6ed38ca4bb058181182a4a2c)) - updated url in readme - ([535df53](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/535df539f7207f70dc118b918b8641df8e5d3edc)) + ([535df53](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/535df539f7207f70dc118b918b8641df8e5d3edc)) - removed print-statement from datetime_restrictions - ([e48d477](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e48d4778ae88ca44172a3004b3a3084f3183c3b8)) + ([e48d477](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e48d4778ae88ca44172a3004b3a3084f3183c3b8)) - updated MDR and example data - ([6c8a4f4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/6c8a4f49ef96cbbf61a89ede49f2243b1c9ede80)) + ([6c8a4f4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6c8a4f49ef96cbbf61a89ede49f2243b1c9ede80)) - repair codecov badge - ([a9ad523](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/a9ad523f85d0a71e38114039d371b68b5bd9703d)) + ([a9ad523](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a9ad523f85d0a71e38114039d371b68b5bd9703d)) - fixed wrong formatting of markdown in readme.md badges section - ([80afe85](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/80afe85fe9098b8ea12c0f4084e6b0394075e609)) + ([80afe85](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/80afe85fe9098b8ea12c0f4084e6b0394075e609)) - removed html comments - ([2e36321](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/2e36321c093c25cb15bf8989132acfb9697d4c66)) + ([2e36321](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/2e36321c093c25cb15bf8989132acfb9697d4c66)) - reactivated cran-badges in readme.md - ([5055a0a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5055a0a48498b272488b600e47783ef4aac35d9a)) + ([5055a0a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5055a0a48498b272488b600e47783ef4aac35d9a)) Full set of changes: -[`v0.2.2...v0.2.3`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.2.2...v0.2.3) +[`v0.2.2...v0.2.3`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.2.2...v0.2.3) ## v0.2.2 (2022-01-12) #### Bug fixes - merging origin/development - ([bd79108](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/bd791085c718c8746f6f47b29c677da9dea5848c)) + ([bd79108](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/bd791085c718c8746f6f47b29c677da9dea5848c)) #### Refactorings - updated K8s manifest and docs - ([0026dfc](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/0026dfce5a988e9a27f0d34f2c93b3841652f2a4)) + ([0026dfc](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/0026dfce5a988e9a27f0d34f2c93b3841652f2a4)) #### Tests - fix failing cran checks due to failing unit tests in rdevel - ([676bfcb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/676bfcbe41d2f06068f073b021873c0c2e340f7f)) + ([676bfcb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/676bfcbe41d2f06068f073b021873c0c2e340f7f)) #### Docs - added @chgl / @christian.gulden to thanks - ([4c1dddf](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/4c1dddf4da9ffe4d21ffed600e1e6976685bbedc)) + ([4c1dddf](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/4c1dddf4da9ffe4d21ffed600e1e6976685bbedc)) - updated k8s docs - ([947c0a6](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/947c0a6f403568bdca00d52bbbe0c7fc37715305)) + ([947c0a6](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/947c0a6f403568bdca00d52bbbe0c7fc37715305)) #### Other changes - updated news.md - ([177aaf5](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/177aaf59b16489aa1b722f09df1500f90bff5595)) + ([177aaf5](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/177aaf59b16489aa1b722f09df1500f90bff5595)) - cran-submission to rbuildignore - ([f288671](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f288671ae43158cf5aeb4e233b183ae86aa74e62)) + ([f288671](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f288671ae43158cf5aeb4e233b183ae86aa74e62)) Full set of changes: -[`v0.2.1...v0.2.2`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.2.1...v0.2.2) +[`v0.2.1...v0.2.2`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.2.1...v0.2.2) ## v0.2.1 (2022-01-04) #### New features - added script to run testdata - ([9a347df](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9a347df1341e090bccc40cf12754501a1e331a89)) + ([9a347df](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9a347df1341e090bccc40cf12754501a1e331a89)) - added kubernetes manifest - ([f0ca10a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f0ca10a7956dc4dbdc0d420304484ff79a6ba1fd)) + ([f0ca10a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f0ca10a7956dc4dbdc0d420304484ff79a6ba1fd)) #### Bug fixes - will not fail when tinytex is missing - ([7d6748d](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/7d6748deb432f8e584e0491ce408ceb4a3cc8210)) + ([7d6748d](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/7d6748deb432f8e584e0491ce408ceb4a3cc8210)) - removed tinytex-installation from report.r due to cran policy violation - ([79c7a87](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/79c7a87c60e3fe027cb7390b1fe934c5b75bd5ea)) + ([79c7a87](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/79c7a87c60e3fe027cb7390b1fe934c5b75bd5ea)) #### Docs - cran-installation to readme - ([05785d0](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/05785d049d6082962971526ea6b934f4926f5f6a)) + ([05785d0](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/05785d049d6082962971526ea6b934f4926f5f6a)) #### Other changes - updated news.md - ([a38d63b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/a38d63bf7e0996fae8c3394dd699200112ef36d1)) + ([a38d63b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a38d63bf7e0996fae8c3394dd699200112ef36d1)) - fixed typo in rbuildignore - ([fd782e8](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/fd782e896759ed67a7d2b21cf7794ea8b9b01e47)) + ([fd782e8](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/fd782e896759ed67a7d2b21cf7794ea8b9b01e47)) - updated `news.md` - ([8931b2c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8931b2c91f38a302a9bdd0f9574a924a37055b46)) + ([8931b2c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8931b2c91f38a302a9bdd0f9574a924a37055b46)) - detailed error message for `tinytex` - ([b956b76](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b956b765a33c646bb85b01ed86b87b507c5f1766)) + ([b956b76](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b956b765a33c646bb85b01ed86b87b507c5f1766)) - updated news.md - ([5d78080](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5d780803e926548e73bce4fcc86fbba689bbf424)) + ([5d78080](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5d780803e926548e73bce4fcc86fbba689bbf424)) - allow news.md in .gitignore and add to .Rbuildignore - ([e469966](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e469966750c3a3598248662e85767c7c3d9f6f72)) + ([e469966](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e469966750c3a3598248662e85767c7c3d9f6f72)) - added creation of news.md to devstuffs.R - ([6f551b8](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/6f551b8f149b791ec9805ec229e3a377d36e78a0)) + ([6f551b8](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6f551b8f149b791ec9805ec229e3a377d36e78a0)) Full set of changes: -[`v0.2.0...v0.2.1`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.2.0...v0.2.1) +[`v0.2.0...v0.2.1`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.2.0...v0.2.1) ## v0.2.0 (2022-01-03) #### New features - new possibility for time constraints using sql modifications - ([933bcf3](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/933bcf3b696c9a8a8d94c258395f7ec0c3e16a22)) + ([933bcf3](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/933bcf3b696c9a8a8d94c258395f7ec0c3e16a22)) - added build script and docker images - ([21bbe79](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/21bbe79a39b49bd54ec456e4ee828c9e632978a5)) + ([21bbe79](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/21bbe79a39b49bd54ec456e4ee828c9e632978a5)) - switched to rocker-verse with included latex - ([b4abb96](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b4abb9677e3da395a12b7ee265d54588a564c59c)) + ([b4abb96](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b4abb9677e3da395a12b7ee265d54588a564c59c)) - added demo-dockerfile and dc - ([97f2f85](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/97f2f85e6f39f48eb7b1045f273fe49667a76e5b)) + ([97f2f85](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/97f2f85e6f39f48eb7b1045f273fe49667a76e5b)) - added `run_once` function for container runs - ([f762009](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f762009b1e58005b221434c4f6f44c304ad4f9f3)) + ([f762009](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f762009b1e58005b221434c4f6f44c304ad4f9f3)) - added `run_once.R` file for one-shot-container-runs - ([7c7ac8c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/7c7ac8c7c15ba8e42d37f04375c9ae2defdbab64)) + ([7c7ac8c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/7c7ac8c7c15ba8e42d37f04375c9ae2defdbab64)) #### Bug fixes - added `xcolor` to latex deps to avoid latex crashing in the image - ([961958a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/961958a67b7f199a6b02085b7f0bc3faa5909570)) + ([961958a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/961958a67b7f199a6b02085b7f0bc3faa5909570)) - build script image tagging fixed - ([8dabd0d](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8dabd0d96ae062d5e8c85378168c1cacff4c4496)) + ([8dabd0d](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8dabd0d96ae062d5e8c85378168c1cacff4c4496)) - moved `run_once` file to the right folder - ([1f6b5a1](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1f6b5a16262eb781c53b77db4a80222d6b1f7afa)) + ([1f6b5a1](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1f6b5a16262eb781c53b77db4a80222d6b1f7afa)) #### Docs - added hints for rocker/verse to readme - ([fcc95c2](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/fcc95c2930c5e872f9972f7de9925d0bb1645371)) + ([fcc95c2](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/fcc95c2930c5e872f9972f7de9925d0bb1645371)) - updated readme - ([8f09194](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8f091942798ee869a4d229f186fc4baf13caa342)) + ([8f09194](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8f091942798ee869a4d229f186fc4baf13caa342)) #### Other changes - updated image and added renovate - ([b8463b1](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b8463b12c28f787a81789e2c11f5d4e430b7c9a5)) + ([b8463b1](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b8463b12c28f787a81789e2c11f5d4e430b7c9a5)) - added printing of current versions to dqa function - ([206f39c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/206f39c358adb4be0fb4bdd7eef517a7401441bb)) + ([206f39c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/206f39c358adb4be0fb4bdd7eef517a7401441bb)) - added tinitex dependency - ([f85cf43](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f85cf43b19c180dfeeb1e3ea4406ea16db7b97fc)) + ([f85cf43](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f85cf43b19c180dfeeb1e3ea4406ea16db7b97fc)) - switched to dev version of miracumdqa - ([d465cae](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d465cae103e3a64663c451af3dbd54fc8a364b44)) + ([d465cae](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d465cae103e3a64663c451af3dbd54fc8a364b44)) - fixed intendation in readme - ([cf23a26](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/cf23a26ae08ceefbefc2bac9d8689007b0d6aaf4)) + ([cf23a26](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/cf23a26ae08ceefbefc2bac9d8689007b0d6aaf4)) - added miracumdqa and docs - ([bdc42b0](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/bdc42b05740a3704dd2e97c2383bda9644105312)) + ([bdc42b0](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/bdc42b05740a3704dd2e97c2383bda9644105312)) - added tinytex packages to dockerfile - ([88f78d4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/88f78d48010a5e8d85e9681e94e9b63351aff4a3)) + ([88f78d4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/88f78d48010a5e8d85e9681e94e9b63351aff4a3)) - switched to variables in docker compose - ([0352144](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/03521446c10f0c5019bbbbd2fc6efb7f37f6a0f2)) + ([0352144](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/03521446c10f0c5019bbbbd2fc6efb7f37f6a0f2)) - catched fromjson error - ([0a96b58](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/0a96b58719a5f05834c9dd4a5c35f0fdec5beaf5)) + ([0a96b58](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/0a96b58719a5f05834c9dd4a5c35f0fdec5beaf5)) - added logmessages - ([1bed01a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1bed01adfc551dad578f092359cff7b6ba2a1a3a)) + ([1bed01a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1bed01adfc551dad578f092359cff7b6ba2a1a3a)) - removed `run_once()` function - ([8bfe9e5](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8bfe9e584f0713c098b62133dcd36c2642a9237b)) + ([8bfe9e5](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8bfe9e584f0713c098b62133dcd36c2642a9237b)) Full set of changes: -[`v0.1.7...v0.2.0`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.1.7...v0.2.0) +[`v0.1.7...v0.2.0`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.1.7...v0.2.0) ## v0.1.7 (2021-07-01) #### New features - new release - ([b60d779](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b60d779154936db5fd416b5a530a73295698dce8)) + ([b60d779](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b60d779154936db5fd416b5a530a73295698dce8)) - added uniqueness and atemporal plausibility checks - ([ff37132](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/ff371327855f738682b829d802b90baeee122589)) + ([ff37132](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/ff371327855f738682b829d802b90baeee122589)) - integrated support for non-timestamp columns for time-filtering - ([2608a86](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/2608a861943c7ebdcc357bb3343c2d89358bd7bf)) + ([2608a86](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/2608a861943c7ebdcc357bb3343c2d89358bd7bf)) - integrated temporal filtering - ([3692da9](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/3692da9684ce6be208f7e2efd9637ce38317ade4)) + ([3692da9](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/3692da9684ce6be208f7e2efd9637ce38317ade4)) - added time filtering function for databases - ([2da4a6f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/2da4a6ff9b66422043de3b32776a98dea2f0b468)) + ([2da4a6f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/2da4a6ff9b66422043de3b32776a98dea2f0b468)) - added time-filtering for csv files - ([591c720](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/591c720e4f2c63bb644567a2ce5a58b478b6dfd4)) + ([591c720](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/591c720e4f2c63bb644567a2ce5a58b478b6dfd4)) #### Bug fixes - report display if no datamap variable was analysed - ([2c4283e](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/2c4283ece768e74e9e481017531ad87989594c6c)) + ([2c4283e](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/2c4283ece768e74e9e481017531ad87989594c6c)) - if analysis was performed without elements from the datamap no error is displayed now - ([b3681bf](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/b3681bf16842cf89f4181574180623b6fdbdb32e)) + ([b3681bf](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/b3681bf16842cf89f4181574180623b6fdbdb32e)) - improved error handling with missing constraints - ([337d0a0](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/337d0a0cfed410350eab0fae216bd09f5ad2ea3a)) + ([337d0a0](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/337d0a0cfed410350eab0fae216bd09f5ad2ea3a)) - removing undefined from mdr filtering - ([94e76ba](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/94e76ba890cc79b22867014ea76a136ee7b14c94)) + ([94e76ba](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/94e76ba890cc79b22867014ea76a136ee7b14c94)) - renamed format_POSIXct to lowercase - ([9306751](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9306751e762b70bda64000edfb45810915cc0ddf)) + ([9306751](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9306751e762b70bda64000edfb45810915cc0ddf)) - formatting error - ([1a551d8](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1a551d80363bd422e0e2a504117413e078ae6509)) + ([1a551d8](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1a551d80363bd422e0e2a504117413e078ae6509)) - made demo files working - ([26c864c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/26c864cadbe8323bf7671343e9d4183cb86ad428)) + ([26c864c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/26c864cadbe8323bf7671343e9d4183cb86ad428)) - added support for datetime_format in conformance checks - ([bde1f22](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/bde1f22350925ef4e9fe8d3cb6c80d26e3888215)) + ([bde1f22](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/bde1f22350925ef4e9fe8d3cb6c80d26e3888215)) - changed default format for date constraint - ([57fcc54](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/57fcc5451571ef241d1956a22e2e4ae70f4b743b)) + ([57fcc54](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/57fcc5451571ef241d1956a22e2e4ae70f4b743b)) - fixed bug where empty filter-cols crashed the script - ([1a1e7c4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1a1e7c4c83d4b2d99db00ccf4db35ea6ece0f615)) + ([1a1e7c4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1a1e7c4c83d4b2d99db00ccf4db35ea6ece0f615)) - adapted to new version of `DIZutils::db_connection` - ([73ce62b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/73ce62be0d37f21b08972643691932c1bff112a9)) + ([73ce62b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/73ce62be0d37f21b08972643691932c1bff112a9)) - fixed date format in db-import - ([8b29f2b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8b29f2b660774a48a6fc94a21d895bb63eb12b98)) + ([8b29f2b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8b29f2b660774a48a6fc94a21d895bb63eb12b98)) #### Refactorings - fixed gh action warnings - ([8f7d207](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8f7d2076cc1f9c0c199d472406688e42b6fbd579)) + ([8f7d207](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8f7d2076cc1f9c0c199d472406688e42b6fbd579)) - improved style of the report - ([61d9725](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/61d9725759c0e192a66dd81c6d786958a5f75fd3)) + ([61d9725](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/61d9725759c0e192a66dd81c6d786958a5f75fd3)) - updated restricting date calls - ([38b54db](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/38b54db594f766565d6f31b6107cbf49fdf485b6)) + ([38b54db](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/38b54db594f766565d6f31b6107cbf49fdf485b6)) #### CI - moved to central ci-config - ([fd136b4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/fd136b4d3183cd7c340061cf3305ffb1aea26c72)) + ([fd136b4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/fd136b4d3183cd7c340061cf3305ffb1aea26c72)) - moving towards central ci-config - ([7fafa3e](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/7fafa3e52e6e1f2e64e9f85c450497b5c81f548a)) + ([7fafa3e](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/7fafa3e52e6e1f2e64e9f85c450497b5c81f548a)) - test - ([6092201](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/6092201d766716b40d648568451c3e02b0d2f188)) + ([6092201](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6092201d766716b40d648568451c3e02b0d2f188)) - test - ([da43245](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/da43245d8d3a06d51e0ccbdadd60e859da6aeb1a)) + ([da43245](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/da43245d8d3a06d51e0ccbdadd60e859da6aeb1a)) - moved to central gitlab-ci - ([03d2eed](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/03d2eed9a617ab59105f1d2c43b6afbb72a7150d)) + ([03d2eed](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/03d2eed9a617ab59105f1d2c43b6afbb72a7150d)) - moved to central ci-config - ([4fd377a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/4fd377a46114778e910043b71a45dfe0272da082)) + ([4fd377a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/4fd377a46114778e910043b71a45dfe0272da082)) - moved to central ci-configuration - ([5f2c3eb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5f2c3eb2a12731c2618192dbb88f018779fe33f2)) + ([5f2c3eb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5f2c3eb2a12731c2618192dbb88f018779fe33f2)) - moved to decentral ci - ([175b32f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/175b32fce03949dfa965f9cbffa5806eafa298a8)) + ([175b32f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/175b32fce03949dfa965f9cbffa5806eafa298a8)) - moved to decentral ci-config - ([8be72d7](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8be72d7f6637be164f0c58f5dbb37523ef1b47a9)) + ([8be72d7](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8be72d7f6637be164f0c58f5dbb37523ef1b47a9)) #### Docs - added `key` docu in function `apply_time_restriciton()` - ([cf83793](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/cf837934b3e0f05adbf5a27b99f2a6c0672f87dc)) + ([cf83793](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/cf837934b3e0f05adbf5a27b99f2a6c0672f87dc)) - fixed optionality of parameter in `apply_time_restriciton` - ([a49a8db](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/a49a8db1b03fdb236391bd3183562969d0d17e99)) + ([a49a8db](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a49a8db1b03fdb236391bd3183562969d0d17e99)) #### Other changes - updated desc - ([52b97b1](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/52b97b1836063ff8c4913ccd4b1ed0426a4b682f)) + ([52b97b1](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/52b97b1836063ff8c4913ccd4b1ed0426a4b682f)) - removed uncommented code - ([8126666](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/81266669521a6ea00b6478e87f6b0da5401cf356)) + ([8126666](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/81266669521a6ea00b6478e87f6b0da5401cf356)) - version increment to 0.1.6.9013 - ([91aba4b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/91aba4b18130edfeb09f4684596df93180311263)) + ([91aba4b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/91aba4b18130edfeb09f4684596df93180311263)) - version increment - ([1ea4875](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/1ea4875bf27d8d12ca89e81ea8c2d54125e3606a)) + ([1ea4875](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/1ea4875bf27d8d12ca89e81ea8c2d54125e3606a)) - added findme in multicore functions - ([78cbcf5](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/78cbcf569ea8378fa080a5320078ae3aa0247016)) + ([78cbcf5](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/78cbcf569ea8378fa080a5320078ae3aa0247016)) - added support for custom format for time filtering csv files - ([85ac59a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/85ac59a2c886e1bc65bfa0f59cd0e381b034fc48)) + ([85ac59a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/85ac59a2c886e1bc65bfa0f59cd0e381b034fc48)) - added `check_date_restriction_requirements` as external function - ([55ecb07](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/55ecb0736e24ebd6675668591c0bfc49be78b74d)) + ([55ecb07](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/55ecb0736e24ebd6675668591c0bfc49be78b74d)) - fixed potential use of uncommented code - ([02f6250](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/02f6250fb7969a2d7593f9108717a1dd4ec8691f)) + ([02f6250](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/02f6250fb7969a2d7593f9108717a1dd4ec8691f)) - moving forwards to temporal restrictions - ([43f946a](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/43f946aa927f6b7f7f8a677f30d9b183bc226067)) + ([43f946a](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/43f946aa927f6b7f7f8a677f30d9b183bc226067)) Full set of changes: -[`v0.1.6...v0.1.7`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.1.6...v0.1.7) +[`v0.1.6...v0.1.7`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.1.6...v0.1.7) ## v0.1.6 (2021-02-18) #### Bug fixes - updated dizutils version - ([f4a6182](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f4a618294af85ba7e00ab224159593b17a9eb79a)) + ([f4a6182](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f4a618294af85ba7e00ab224159593b17a9eb79a)) - fixed error with missing date_format - ([31e60a4](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/31e60a4d61509addbd98ce75027a25e0878638f3)) + ([31e60a4](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/31e60a4d61509addbd98ce75027a25e0878638f3)) - custom setting inputs (from the ui) are now used as db-connection parameters - ([5fbd23f](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5fbd23f122be10767054950bc115f668f5361ef0)) + ([5fbd23f](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5fbd23f122be10767054950bc115f668f5361ef0)) #### Refactorings - reverted changes in example mdr - ([2c65a18](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/2c65a181256486947c0084bab7812138f0cbf5fa)) + ([2c65a18](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/2c65a181256486947c0084bab7812138f0cbf5fa)) - preparation for new release v0.1.6 - ([854d3b5](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/854d3b5e971db9ec2ce66742183faed7a1d8854d)) + ([854d3b5](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/854d3b5e971db9ec2ce66742183faed7a1d8854d)) #### CI - run ci also for new tags - ([bc338b2](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/bc338b27d448d47f86798cc11de0778ee42da280)) + ([bc338b2](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/bc338b27d448d47f86798cc11de0778ee42da280)) - xied ci - ([94bcf25](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/94bcf2554a0d074c04d302de7ec20e403db9f0cb)) + ([94bcf25](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/94bcf2554a0d074c04d302de7ec20e403db9f0cb)) - update - ([d917729](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d917729d6daac72b4ea5246321750667e972a331)) + ([d917729](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d917729d6daac72b4ea5246321750667e972a331)) - excluded building a new base_image for all dev-commits - ([e4cbc09](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/e4cbc09d9ac510a22c50f5916a145830361a52b5)) + ([e4cbc09](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/e4cbc09d9ac510a22c50f5916a145830361a52b5)) - fixed ci pipeline - ([816dc34](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/816dc3441192084e3f33a819ef8efd6d828a27b0)) + ([816dc34](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/816dc3441192084e3f33a819ef8efd6d828a27b0)) - fix - ([84ef752](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/84ef752276210302537c2d1e2cb7997bb37f1b0d)) + ([84ef752](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/84ef752276210302537c2d1e2cb7997bb37f1b0d)) - updated ci for updateing the base_image in ci-run - ([c6cc1ee](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/c6cc1ee62db06b38be9f2230319a53d4aba1ca58)) + ([c6cc1ee](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/c6cc1ee62db06b38be9f2230319a53d4aba1ca58)) - updated ci - ([55b7631](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/55b76319e490779876b2cb9c992292f9c2f28e48)) + ([55b7631](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/55b76319e490779876b2cb9c992292f9c2f28e48)) - fixed ci - ([980ac31](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/980ac31f40d4706959c68179eb6a58804a0fe60e)) + ([980ac31](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/980ac31f40d4706959c68179eb6a58804a0fe60e)) - removed apk - ([98cd55b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/98cd55b0d6a42b0b2fab68be6b89a66151438deb)) + ([98cd55b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/98cd55b0d6a42b0b2fab68be6b89a66151438deb)) - updated harbor url - ([5af0465](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/5af0465a66b7225d95c95381f55a801bb3f6763b)) + ([5af0465](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/5af0465a66b7225d95c95381f55a801bb3f6763b)) - docker login - ([53348bb](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/53348bb560daf4f1201a94fdeeb7b3a0df0840a5)) + ([53348bb](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/53348bb560daf4f1201a94fdeeb7b3a0df0840a5)) - fixed docker login - ([f9b977b](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/f9b977bf2b56087b93b6d4bc1ae0e225245d7969)) + ([f9b977b](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/f9b977bf2b56087b93b6d4bc1ae0e225245d7969)) - ci fixes for harbor login - ([9b79009](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/9b79009ea821008164e6fa029fb34d6d587ab38b)) + ([9b79009](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/9b79009ea821008164e6fa029fb34d6d587ab38b)) - updated ci - ([d5040c1](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/d5040c174cbdda75a4217d9c75e39e73086a9a41)) + ([d5040c1](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/d5040c174cbdda75a4217d9c75e39e73086a9a41)) - added dqa_base_image as ci-source - ([7f595fd](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/7f595fd8f812accb137364db3d2eaa8acb513288)) + ([7f595fd](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/7f595fd8f812accb137364db3d2eaa8acb513288)) - switched from install.packages() to install2.r due to speed improvements - ([0ea737e](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/0ea737e7cdd564674c04a23597bee6bd4817d632)) + ([0ea737e](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/0ea737e7cdd564674c04a23597bee6bd4817d632)) - switched from install.packages() to install2.r due to speed improvements - ([a619a59](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/a619a59dbb149a16c4f401959404dea5dd7601e1)) + ([a619a59](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/a619a59dbb149a16c4f401959404dea5dd7601e1)) - switched from install.packages() to install2.r due to speed improvements - ([be5666c](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/be5666cd94a3ba18e0e364dcf675af4cfbfdc57b)) + ([be5666c](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/be5666cd94a3ba18e0e364dcf675af4cfbfdc57b)) - switched from install.packages() to install2.r due to speed improvements - ([8dfcffd](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/8dfcffdcef1019a997be89c9a5857ac5c7fa69a1)) + ([8dfcffd](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/8dfcffdcef1019a997be89c9a5857ac5c7fa69a1)) - switched from install.packages() to install2.r due to speed improvements - ([dfe9f70](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/dfe9f709686473353015e6a18619d2b3511defbe)) + ([dfe9f70](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/dfe9f709686473353015e6a18619d2b3511defbe)) - switched from install.packages() to install2.r due to speed improvements - ([6ca1dd8](https://gitlab.miracum.org/miracum/dqa/dqastats/tree/6ca1dd871b98c634a693ccaf52591d0461d67f5a)) + ([6ca1dd8](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/tree/6ca1dd871b98c634a693ccaf52591d0461d67f5a)) Full set of changes: -[`v0.1.5...v0.1.6`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.1.5...v0.1.6) +[`v0.1.5...v0.1.6`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.1.5...v0.1.6) ## v0.1.5 (2020-05-07) Full set of changes: -[`v0.1.4...v0.1.5`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.1.4...v0.1.5) +[`v0.1.4...v0.1.5`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.1.4...v0.1.5) ## v0.1.4 (2020-04-28) Full set of changes: -[`v0.1.3...v0.1.4`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.1.3...v0.1.4) +[`v0.1.3...v0.1.4`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.1.3...v0.1.4) ## v0.1.3 (2020-04-20) Full set of changes: -[`v0.1.2...v0.1.3`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.1.2...v0.1.3) +[`v0.1.2...v0.1.3`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.1.2...v0.1.3) ## v0.1.2 (2020-03-20) Full set of changes: -[`v0.1.1...v0.1.2`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.1.1...v0.1.2) +[`v0.1.1...v0.1.2`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.1.1...v0.1.2) ## v0.1.1 (2020-03-18) Full set of changes: -[`v0.1.0...v0.1.1`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.1.0...v0.1.1) +[`v0.1.0...v0.1.1`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.1.0...v0.1.1) ## v0.1.0 (2020-03-16) Full set of changes: -[`v0.0.7...v0.1.0`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.0.7...v0.1.0) +[`v0.0.7...v0.1.0`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.0.7...v0.1.0) ## v0.0.7 (2020-02-25) Full set of changes: -[`v0.0.6...v0.0.7`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.0.6...v0.0.7) +[`v0.0.6...v0.0.7`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.0.6...v0.0.7) ## v0.0.6 (2020-01-29) Full set of changes: -[`v0.0.5...v0.0.6`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.0.5...v0.0.6) +[`v0.0.5...v0.0.6`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.0.5...v0.0.6) ## v0.0.5 (2019-12-02) Full set of changes: -[`v0.0.4...v0.0.5`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.0.4...v0.0.5) +[`v0.0.4...v0.0.5`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.0.4...v0.0.5) ## v0.0.4 (2019-11-15) Full set of changes: -[`v0.0.3...v0.0.4`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.0.3...v0.0.4) +[`v0.0.3...v0.0.4`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.0.3...v0.0.4) ## v0.0.3 (2019-11-12) Full set of changes: -[`v0.0.2...v0.0.3`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.0.2...v0.0.3) +[`v0.0.2...v0.0.3`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.0.2...v0.0.3) ## v0.0.2 (2019-09-27) Full set of changes: -[`v0.0.2.9000...v0.0.2`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.0.2.9000...v0.0.2) +[`v0.0.2.9000...v0.0.2`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.0.2.9000...v0.0.2) ## v0.0.2.9000 (2019-08-30) Full set of changes: -[`v0.0.1.9000...v0.0.2.9000`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.0.1.9000...v0.0.2.9000) +[`v0.0.1.9000...v0.0.2.9000`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.0.1.9000...v0.0.2.9000) ## v0.0.1.9000 (2019-08-20) Full set of changes: -[`v0.0.0.9003...v0.0.1.9000`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.0.0.9003...v0.0.1.9000) +[`v0.0.0.9003...v0.0.1.9000`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.0.0.9003...v0.0.1.9000) ## v0.0.0.9003 (2019-08-14) Full set of changes: -[`v0.0.0.9002...v0.0.0.9003`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/v0.0.0.9002...v0.0.0.9003) +[`v0.0.0.9002...v0.0.0.9003`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/v0.0.0.9002...v0.0.0.9003) ## v0.0.0.9002 (2019-08-08) Full set of changes: -[`0567007...v0.0.0.9002`](https://gitlab.miracum.org/miracum/dqa/dqastats/-/compare/0567007...v0.0.0.9002) +[`0567007...v0.0.0.9002`](https://git.uk-erlangen.de/mik-diz/mik-diz-phd/DQA/dqastats/compare/0567007...v0.0.0.9002) diff --git a/R/DQA.R b/R/DQA.R index a31be20..2d7f79c 100644 --- a/R/DQA.R +++ b/R/DQA.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/calc_cat_stats.R b/R/calc_cat_stats.R index 9696150..68a2172 100644 --- a/R/calc_cat_stats.R +++ b/R/calc_cat_stats.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/calc_counts.R b/R/calc_counts.R index 0f9d54d..8bf9257 100644 --- a/R/calc_counts.R +++ b/R/calc_counts.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/calc_description.R b/R/calc_description.R index 56ae6c8..fe107f9 100644 --- a/R/calc_description.R +++ b/R/calc_description.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/calc_stats.R b/R/calc_stats.R index 0aeb6aa..48b4eab 100644 --- a/R/calc_stats.R +++ b/R/calc_stats.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/categorical_analysis.R b/R/categorical_analysis.R index 3d596ed..44b21ef 100644 --- a/R/categorical_analysis.R +++ b/R/categorical_analysis.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/completeness.R b/R/completeness.R index 3a6cdf8..61d756c 100644 --- a/R/completeness.R +++ b/R/completeness.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/conformance.R b/R/conformance.R index 6880e5c..7bac6bb 100644 --- a/R/conformance.R +++ b/R/conformance.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/count_uniques.R b/R/count_uniques.R index 1ef1036..19e8142 100644 --- a/R/count_uniques.R +++ b/R/count_uniques.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/create_pdf_report.R b/R/create_pdf_report.R index ff60d0e..8c2924d 100644 --- a/R/create_pdf_report.R +++ b/R/create_pdf_report.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -220,9 +220,11 @@ create_pdf_report <- function(rv = rv, tmpdir = tempdir(), fileext = "-params.yml" ) + writeLines( text = c(paste0("source_system_name: \"", rv$source$system_name, "\""), paste0("target_system_name: \"", rv$target$system_name, "\""), + paste0("sitename: \"", rv$sitename, "\""), paste0("restricting_date: \"", get_restricting_date_info( restricting_date = rv$restricting_date, time = FALSE), "\"" )), @@ -264,145 +266,3 @@ create_pdf_report <- function(rv = rv, }) } } - - -#' @title create_markdown helper function -#' -#' @description Internal function to generate the final PDF report. -#' -#' @param outdir A character string. The directory to store the resulting -#' PDF document. Default: \code{tempdir}. -#' @inheritParams load_csv -#' @inheritParams dqa -#' -#' @return No return value. This function renders the PDF markdown report with -#' the data quality assessment results and saves it to `outdir`. -#' -#' @examples -#' \donttest{# runtime > 5 sec. -#' utils_path <- system.file( -#' "demo_data/utilities/", -#' package = "DQAstats" -#' ) -#' mdr_filename <- "mdr_example_data.csv" -#' rv <- list() -#' rv$mdr <- read_mdr( -#' utils_path = utils_path, -#' mdr_filename <- mdr_filename -#' ) -#' -#' source_system_name <- "exampleCSV_source" -#' target_system_name <- "exampleCSV_target" -#' -#' rv <- c(rv, create_helper_vars( -#' mdr = rv$mdr, -#' source_db = source_system_name, -#' target_db = target_system_name -#' )) -#' # save source/target vars -#' rv$source$system_name <- source_system_name -#' rv$target$system_name <- target_system_name -#' rv$source$system_type <- "csv" -#' rv$target$system_type <- "csv" -#' -#' rv$log$logfile_dir <- tempdir() -#' -#' # set headless (without GUI, progressbars, etc.) -#' rv$headless <- TRUE -#' -#' # set configs -#' demo_files <- system.file("demo_data", package = "DQAstats") -#' Sys.setenv("EXAMPLECSV_SOURCE_PATH" = demo_files) -#' Sys.setenv("EXAMPLECSV_TARGET_PATH" = demo_files) -#' -#' # get configs -#' rv$source$settings <- DIZutils::get_config_env( -#' system_name = rv$source$system_name, -#' logfile_dir = rv$log$logfile_dir, -#' headless = rv$headless -#' ) -#' rv$target$settings <- DIZutils::get_config_env( -#' system_name = tolower(rv$target$system_name), -#' logfile_dir = rv$log$logfile_dir, -#' headless = rv$headless -#' ) -#' -#' # set start_time (e.g. when clicking the 'Load Data'-button in shiny -#' rv$start_time <- format(Sys.time(), usetz = TRUE, tz = "CET") -#' -#' # define restricting date -#' rv$restricting_date$use_it <- FALSE -#' -#' # load source data -#' tempdat <- data_loading( -#' rv = rv, -#' system = rv$source, -#' keys_to_test = rv$keys_source -#' ) -#' rv$data_source <- tempdat$outdata -#' -#' # load target data -#' tempdat <- data_loading( -#' rv = rv, -#' system = rv$target, -#' keys_to_test = rv$keys_target -#' ) -#' rv$data_target <- tempdat$outdata -#' -#' rv$data_plausibility$atemporal <- get_atemp_plausis( -#' rv = rv, -#' atemp_vars = rv$pl$atemp_vars, -#' mdr = rv$mdr, -#' headless = rv$headless -#' ) -#' -#' # add the plausibility raw data to data_target and data_source -#' for (i in names(rv$data_plausibility$atemporal)) { -#' for (k in c("source_data", "target_data")) { -#' w <- gsub("_data", "", k) -#' raw_data <- paste0("data_", w) -#' rv[[raw_data]][[i]] <- -#' rv$data_plausibility$atemporal[[i]][[k]][[raw_data]] -#' rv$data_plausibility$atemporal[[i]][[k]][[raw_data]] <- NULL -#' } -#' gc() -#' } -#' -#' # calculate descriptive results -#' rv$results_descriptive <- descriptive_results( -#' rv = rv, -#' headless = rv$headless -#' ) -#' -#' # calculate unique plausibilites -#' rv$results_plausibility_unique <- uniq_plausi_results( -#' rv = rv, -#' uniq_vars = rv$pl$uniq_vars, -#' mdr = rv$mdr, -#' headless = rv$headless -#' ) -#' -#' create_markdown( -#' rv = rv, -#' utils_path = rv$utilspath, -#' outdir = output_dir, -#' headless = rv$headless -#' ) -#' } -#' @export -#' -create_markdown <- function(rv = rv, - utils_path, - outdir = tempdir(), - headless = FALSE) { - warning(paste0( - "'create_markdown()' is deprecated ", - "and will be removed in a future version. ", - "Use 'create_pdf_report' instead.")) - create_pdf_report( - rv = rv, - utils_path, - outdir = tempdir(), - headless = FALSE - ) -} diff --git a/R/dataloading.R b/R/dataloading.R index 1adff42..14ec241 100644 --- a/R/dataloading.R +++ b/R/dataloading.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -26,7 +26,6 @@ load_csv_files <- function(mdr, # original beginning of function inputdir <- DIZtools::clean_path_name(inputdir) - available_systems <- mdr[get("source_system_name") == sourcesystem & get("source_system_type") == "csv", ] @@ -328,7 +327,6 @@ load_database <- function(rv, ## Initialize outlist: outlist <- list() - ## Read data: outlist <- sapply( X = keys_to_test, @@ -360,20 +358,51 @@ load_database <- function(rv, # blob/91a749cf1232b86af3d499c60b3cbb06dfe68618/R/ # datetime_restrictions.R#L333 # --> maybe try to resolve them / add replace string there - replace_string <- paste0( - "AS r_intermediate WHERE r_intermediate.", - restricting_date_var, " BETWEEN TO_TIMESTAMP('", - as.Date( - rv$restricting_date$start, - format = restricting_date_format - ), - "', 'YYYY-MM-DD') AND TO_TIMESTAMP('", - as.Date( - rv$restricting_date$end, - format = restricting_date_format - ), - " 23:59:59', 'YYYY-MM-DD HH24:MI:SS')" - ) + if (db_type == "trino"){ + replace_string <- paste0( + "AS r_intermediate WHERE r_intermediate.", + restricting_date_var, " BETWEEN TO_TIMESTAMP('", + as.Date( + rv$restricting_date$start, + format = restricting_date_format + ), + "', 'yyyy-mm-dd') AND TO_TIMESTAMP('", + as.Date( + rv$restricting_date$end, + format = restricting_date_format + ), + " 23:59:59', 'yyyy-mm-dd hh24:mi:ss')" + ) + }else{ + replace_string <- paste0( + "AS r_intermediate WHERE r_intermediate.", + restricting_date_var, " BETWEEN TO_TIMESTAMP('", + as.Date( + rv$restricting_date$start, + format = restricting_date_format + ), + "', 'YYYY-MM-DD') AND TO_TIMESTAMP('", + as.Date( + rv$restricting_date$end, + format = restricting_date_format + ), + " 23:59:59', 'YYYY-MM-DD HH24:MI:SS')" + ) + } + # replace_string <- paste0( + # "AS r_intermediate WHERE r_intermediate.", + # restricting_date_var, " BETWEEN TO_TIMESTAMP('", + # as.Date( + # rv$restricting_date$start, + # format = restricting_date_format + # ), + # "', 'YYYY-MM-DD') AND TO_TIMESTAMP('", + # as.Date( + # rv$restricting_date$end, + # format = restricting_date_format + # ), + # " 23:59:59', 'YYYY-MM-DD HH24:MI:SS')" + # ) sql <- gsub("AS r_intermediate", replace_string, sql_statements[[i]]) msg <- paste0(msg, " (using a MODIFIED SUBSELECT)") } else { @@ -658,6 +687,7 @@ load_database <- function(rv, return(outlist) } + #' @title data_loading helper function #' #' @description Internal function to load the source and target data @@ -735,7 +765,6 @@ load_database <- function(rv, #' @export data_loading <- function(rv, system, keys_to_test) { # TODO: Test it! - # # check if all now necessary parameters are correct: stopifnot( @@ -830,7 +859,7 @@ data_loading <- function(rv, system, keys_to_test) { ) outlist$sql_statements <- NA - } else if (system$system_type %in% c("oracle", "postgres")) { + } else if (system$system_type %in% c("oracle", "postgres", "trino")) { # import target SQL msg <- "Loaded SQL statements from " @@ -916,6 +945,32 @@ data_loading <- function(rv, system, keys_to_test) { ) } stopifnot(!is.null(db_con)) + } else if (system$system_type == "trino") { + + # test target_db + if (is.null(system$settings)) { + ## Use environment-settings: + db_con <- + DIZutils::db_connection( + system_name = system$system_name, + db_type = system$system_type, + headless = rv$headless, + logfile_dir = rv$log$logfile_dir + ) + } else { + ## Use included settings: + db_con <- + DIZutils::db_connection( + system_name = system$system_name, + db_type = system$system_type, + headless = rv$headless, + logfile_dir = rv$log$logfile_dir, + from_env = FALSE, + settings = system$settings + ) + } + stopifnot(!is.null(db_con)) + } # load target data loaded_from_db <- load_database( @@ -927,6 +982,7 @@ data_loading <- function(rv, system, keys_to_test) { db_name = system$system_name, db_type = system$system_type ) + outlist$outdata <- sapply( X = names(loaded_from_db), FUN = function(x) { @@ -948,5 +1004,6 @@ data_loading <- function(rv, system, keys_to_test) { } else { stop("\nThis source_system_type is currently not implemented.\n\n") } + return(outlist) } diff --git a/R/datamap.R b/R/datamap.R index 092fe03..a76b7dc 100644 --- a/R/datamap.R +++ b/R/datamap.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/datetime_restrictions.R b/R/datetime_restrictions.R index fcd7f5a..3f03e59 100644 --- a/R/datetime_restrictions.R +++ b/R/datetime_restrictions.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -273,7 +273,7 @@ apply_time_restriciton <- function(data, data[, (colname_tmp) := NULL] res <- data return(res) - } else if (system_type %in% c("postgres", "oracle")) { + } else if (system_type %in% c("postgres", "oracle", "trino")) { if (is.null(system_name) || is.null(mdr) || is.null(db_con)) { DIZtools::feedback( print_this = paste0( @@ -614,7 +614,7 @@ get_restricting_date_info <- function(restricting_date, "nkung. Alle vorliegenden Daten wurden analysiert" ) } else { - res <- "No time restriction. All available data were analysed" + res <- "No time restriction. All available data were analyzed" } } return(res) diff --git a/R/descriptive_results.R b/R/descriptive_results.R index 645ea66..a67d573 100644 --- a/R/descriptive_results.R +++ b/R/descriptive_results.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/difference_check.R b/R/difference_check.R index 659b9f4..b3b0f7c 100644 --- a/R/difference_check.R +++ b/R/difference_check.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/etl.R b/R/etl.R index 19f3bf4..2baeb99 100644 --- a/R/etl.R +++ b/R/etl.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/export_results.R b/R/export_results.R index c6cbad1..f3f3310 100644 --- a/R/export_results.R +++ b/R/export_results.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/extensive_summary.R b/R/extensive_summary.R index 1464eec..c71ab96 100644 --- a/R/extensive_summary.R +++ b/R/extensive_summary.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/format_value_conformance_results.R b/R/format_value_conformance_results.R index 70eb4e2..3e6b4c1 100644 --- a/R/format_value_conformance_results.R +++ b/R/format_value_conformance_results.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/get_key_col.R b/R/get_key_col.R index d1c8180..e5144a5 100644 --- a/R/get_key_col.R +++ b/R/get_key_col.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -25,14 +25,14 @@ get_key_col <- function(rv) { # our table is the "variable_name" (correspondingly, # the variable_name is used to store the sql statements) } else if (rv$source$system_type %in% - c("postgres", "mysql", "fhir", "oracle")) { + c("postgres", "oracle", "trino")) { # Back to key: 'variable_name' was assigned here: key_col_name_src <- "key" } if (rv$target$system_type == "csv") { key_col_name_tar <- "source_table_name" } else if (rv$target$system_type %in% - c("postgres", "mysql", "fhir", "oracle")) { + c("postgres", "oracle", "trino")) { # Back to key: 'variable_name' was assigned here: key_col_name_tar <- "key" } diff --git a/R/mdr.R b/R/mdr.R index 94a8c38..8f72b55 100644 --- a/R/mdr.R +++ b/R/mdr.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by @@ -204,7 +204,7 @@ create_helper_vars <- function(mdr, } else if (mdr[get("source_system_name") == eval(parse(text = paste0(f, "_db"))), unique(get("source_system_type"))] %in% - c("postgres", "oracle")) { + c("postgres", "oracle", "trino")) { outlist[[paste0("keys_", f)]] <- mdr[get("variable_name") != "undefined" & get("key") != "undefined", ][ get("source_system_name") == eval(parse(text = paste0(f, "_db"))), diff --git a/R/plausibilities.R b/R/plausibilities.R index e603054..518c90a 100644 --- a/R/plausibilities.R +++ b/R/plausibilities.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/plausibility_results.R b/R/plausibility_results.R index e594653..5d9b127 100644 --- a/R/plausibility_results.R +++ b/R/plausibility_results.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/reduce_cat.R b/R/reduce_cat.R index d72072b..b79203f 100644 --- a/R/reduce_cat.R +++ b/R/reduce_cat.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/report.R b/R/report.R index 27bcafd..0f49a4a 100644 --- a/R/report.R +++ b/R/report.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/simple_summary.R b/R/simple_summary.R index 8480f36..e5f1580 100644 --- a/R/simple_summary.R +++ b/R/simple_summary.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/test_csv.R b/R/test_csv.R index b64397f..ecf7fd3 100644 --- a/R/test_csv.R +++ b/R/test_csv.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/time_compare.R b/R/time_compare.R index 9f52758..9dedbe0 100644 --- a/R/time_compare.R +++ b/R/time_compare.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/R/utils.R b/R/utils.R index 30bf5d0..5987258 100644 --- a/R/utils.R +++ b/R/utils.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/README.md b/README.md index 4d836d2..d7961b7 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,6 @@ # DQAstats - [![](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental) [![](https://www.r-pkg.org/badges/version/DQAstats)](https://cran.r-project.org/package=DQAstats) [![CRAN @@ -17,7 +16,7 @@ status](https://github.com/miracum/dqa-dqastats/workflows/R%20CMD%20Check%20via% status](https://github.com/miracum/dqa-dqastats/workflows/lint/badge.svg)](https://github.com/miracum/dqa-dqastats/actions) [![R build status](https://github.com/miracum/dqa-dqastats/workflows/test-coverage/badge.svg)](https://github.com/miracum/dqa-dqastats/actions) -[![](https://codecov.io/gh/https://github.com/miracum/dqa-dqastats/branch/master/graph/badge.svg)](https://codecov.io/gh/https://github.com/miracum/dqa-dqastats) +[![](https://codecov.io/gh/https://github.com/miracum/dqa-dqastats/branch/master/graph/badge.svg)](https://app.codecov.io/gh/https://github.com/miracum/dqa-dqastats) [![](https://img.shields.io/badge/doi-10.1055/s--0041--1733847-yellow.svg)](https://doi.org/10.1055/s-0041-1733847) diff --git a/data-raw/debugging_info.R b/data-raw/debugging_info.R index d650a85..cc32056 100644 --- a/data-raw/debugging_info.R +++ b/data-raw/debugging_info.R @@ -16,7 +16,7 @@ invisible(gc()) # Garbage collector/Clear unused RAM # mdr_filename = "mdr_example_data.csv" # output_dir = "output/" - +#test devtools::load_all() ## using real data: #source_system_name = "i2b2" @@ -28,10 +28,11 @@ source_system_name = "kdb" # target_system_name = "p21csv" # target_system_name = "p21staging" # target_system_name = "omop" -target_system_name = "fhir_gw" +target_system_name = "dwh" # config_file = "../demo_settings_INTERNAL.yml" #utils_path = system.file("application/_utilities/", package = "miRacumDQA") utils_path = "../ume_dqatool/inst/application/_utilities/" +utils_path = "./inst/demo_data/utilities/" #mdr_filename = "samply_export.csv" mdr_filename = "mdr_mini.csv" #mdr_filename = "mdr_debug.csv" @@ -48,8 +49,8 @@ DIZtools::setenv_file( ) parallel = TRUE ncores = 4 -restricting_date_start = "2022-01-01" -restricting_date_end = "2022-12-31" +restricting_date_start = "2021-01-01" +restricting_date_end = "2021-12-31" # Sys.setenv("P21CSV_PATH" = "~/development/_p21/data/2018_merged/") diff --git a/data-raw/devstuffs.R b/data-raw/devstuffs.R index fb93260..86cd60f 100644 --- a/data-raw/devstuffs.R +++ b/data-raw/devstuffs.R @@ -26,7 +26,7 @@ my_desc$set_authors(c( # Remove some author fields my_desc$del("Maintainer") # Set the version -my_desc$set_version("0.3.5") +my_desc$set_version("0.3.6") # The title of your package my_desc$set(Title = "Core Functions for Data Quality Assessment") @@ -109,7 +109,7 @@ usethis::use_package("DT", type = "Suggests") remotes_append_vector <- NULL # Development package -tools_tag <- "dev" # e.g. "v0.1.7", "development" or "cran" +tools_tag <- "cran" # e.g. "v0.1.7", "development" or "cran" if (tools_tag == "cran") { install.packages("DIZtools") } else{ @@ -133,7 +133,7 @@ if (tools_tag == "cran") { } } -utils_tag <- "development" # e.g. "v0.1.7", "development" or "cran" +utils_tag <- "cran" # e.g. "v0.1.7", "development" or "cran" if (utils_tag == "cran") { install.packages("DIZutils") } else{ diff --git a/inst/demo_data/utilities/RMD/DQA_report.qmd b/inst/demo_data/utilities/RMD/DQA_report.qmd index bd24624..e523583 100644 --- a/inst/demo_data/utilities/RMD/DQA_report.qmd +++ b/inst/demo_data/utilities/RMD/DQA_report.qmd @@ -17,24 +17,26 @@ # along with this program. If not, see . -title: "Data Quality Report: Comparison of {{< meta source_system_name >}} and {{< meta target_system_name >}}" -subtitle: "{{< meta restricting_date >}}" + +title: | + | Data Quality Report: Comparison of {{< meta source_system_name >}} and {{< meta target_system_name >}} + | \normalsize {{< meta restricting_date >}} author: "(c) Universitätsklinikum Erlangen" date: today -output: +format: pdf: - geometry: 'left=2.5cm,right=2.5cm,top=2cm,bottom=2cm' toc: true - toc_depth: 2 - number_sections: true - includes: - in_header: "./_header/header.tex" - keep_tex: true - pandoc_args: [ - "--variable", "graphics=yes", - "--variable", "compact-title=yes" - ] + toc-depth: 2 + number-sections: true + keep-tex: true + include-in-header: "./_header/header.tex" + geometry: + - left=25mm + - right=25mm + - top=20mm + - bottom=20mm + --- diff --git a/inst/demo_data/utilities/RMD/_header/header.tex b/inst/demo_data/utilities/RMD/_header/header.tex index d94d92e..43b1829 100644 --- a/inst/demo_data/utilities/RMD/_header/header.tex +++ b/inst/demo_data/utilities/RMD/_header/header.tex @@ -19,3 +19,23 @@ \usepackage{float} \usepackage{pdflscape} \usepackage{longtable} + +\thispagestyle{empty} + +\pretitle{ + \begin{center} + \LARGE + \vspace{4cm} +} +\posttitle{ +\end{center} +} + +\predate{ + \begin{center} +} +\postdate{ +\end{center} +\newpage +} + diff --git a/man/create_markdown.Rd b/man/create_markdown.Rd deleted file mode 100644 index 15e7dd3..0000000 --- a/man/create_markdown.Rd +++ /dev/null @@ -1,141 +0,0 @@ -% Generated by roxygen2: do not edit by hand -% Please edit documentation in R/create_pdf_report.R -\name{create_markdown} -\alias{create_markdown} -\title{create_markdown helper function} -\usage{ -create_markdown(rv = rv, utils_path, outdir = tempdir(), headless = FALSE) -} -\arguments{ -\item{rv}{A list object. Internal list simulating Shiny's -'reactive values'.} - -\item{utils_path}{A character string. The path to the utils-folder, -containing the required app utilities like the MDR and the settings folder.} - -\item{outdir}{A character string. The directory to store the resulting -PDF document. Default: \code{tempdir}.} - -\item{headless}{A boolean (default: FALSE). Indicating, if the function is -run only in the console (headless = TRUE) or on a GUI frontend -(headless = FALSE).} -} -\value{ -No return value. This function renders the PDF markdown report with -the data quality assessment results and saves it to \code{outdir}. -} -\description{ -Internal function to generate the final PDF report. -} -\examples{ -\donttest{# runtime > 5 sec. -utils_path <- system.file( - "demo_data/utilities/", - package = "DQAstats" -) -mdr_filename <- "mdr_example_data.csv" -rv <- list() -rv$mdr <- read_mdr( - utils_path = utils_path, - mdr_filename <- mdr_filename -) - -source_system_name <- "exampleCSV_source" -target_system_name <- "exampleCSV_target" - -rv <- c(rv, create_helper_vars( - mdr = rv$mdr, - source_db = source_system_name, - target_db = target_system_name -)) -# save source/target vars -rv$source$system_name <- source_system_name -rv$target$system_name <- target_system_name -rv$source$system_type <- "csv" -rv$target$system_type <- "csv" - -rv$log$logfile_dir <- tempdir() - -# set headless (without GUI, progressbars, etc.) -rv$headless <- TRUE - -# set configs -demo_files <- system.file("demo_data", package = "DQAstats") -Sys.setenv("EXAMPLECSV_SOURCE_PATH" = demo_files) -Sys.setenv("EXAMPLECSV_TARGET_PATH" = demo_files) - -# get configs -rv$source$settings <- DIZutils::get_config_env( - system_name = rv$source$system_name, - logfile_dir = rv$log$logfile_dir, - headless = rv$headless -) -rv$target$settings <- DIZutils::get_config_env( - system_name = tolower(rv$target$system_name), - logfile_dir = rv$log$logfile_dir, - headless = rv$headless -) - -# set start_time (e.g. when clicking the 'Load Data'-button in shiny -rv$start_time <- format(Sys.time(), usetz = TRUE, tz = "CET") - -# define restricting date -rv$restricting_date$use_it <- FALSE - -# load source data -tempdat <- data_loading( - rv = rv, - system = rv$source, - keys_to_test = rv$keys_source -) -rv$data_source <- tempdat$outdata - -# load target data -tempdat <- data_loading( - rv = rv, - system = rv$target, - keys_to_test = rv$keys_target -) -rv$data_target <- tempdat$outdata - -rv$data_plausibility$atemporal <- get_atemp_plausis( - rv = rv, - atemp_vars = rv$pl$atemp_vars, - mdr = rv$mdr, - headless = rv$headless -) - -# add the plausibility raw data to data_target and data_source -for (i in names(rv$data_plausibility$atemporal)) { - for (k in c("source_data", "target_data")) { - w <- gsub("_data", "", k) - raw_data <- paste0("data_", w) - rv[[raw_data]][[i]] <- - rv$data_plausibility$atemporal[[i]][[k]][[raw_data]] - rv$data_plausibility$atemporal[[i]][[k]][[raw_data]] <- NULL - } - gc() -} - -# calculate descriptive results -rv$results_descriptive <- descriptive_results( - rv = rv, - headless = rv$headless -) - -# calculate unique plausibilites -rv$results_plausibility_unique <- uniq_plausi_results( - rv = rv, - uniq_vars = rv$pl$uniq_vars, - mdr = rv$mdr, - headless = rv$headless -) - -create_markdown( - rv = rv, - utils_path = rv$utilspath, - outdir = output_dir, - headless = rv$headless -) -} -} diff --git a/tests/testthat/test-DQA.R b/tests/testthat/test-DQA.R index df77e21..2bd081d 100644 --- a/tests/testthat/test-DQA.R +++ b/tests/testthat/test-DQA.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-MDR.R b/tests/testthat/test-MDR.R index 66b47ae..57d8101 100644 --- a/tests/testthat/test-MDR.R +++ b/tests/testthat/test-MDR.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) # of electronic health records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-check_date_restriction_requirements.R b/tests/testthat/test-check_date_restriction_requirements.R index 2b510df..3a5e365 100644 --- a/tests/testthat/test-check_date_restriction_requirements.R +++ b/tests/testthat/test-check_date_restriction_requirements.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-completeness.R b/tests/testthat/test-completeness.R index 4b6e5c3..e41bbb6 100644 --- a/tests/testthat/test-completeness.R +++ b/tests/testthat/test-completeness.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-conformance.R b/tests/testthat/test-conformance.R index 43fc17c..acae09b 100644 --- a/tests/testthat/test-conformance.R +++ b/tests/testthat/test-conformance.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-dataloading.R b/tests/testthat/test-dataloading.R index d7483d4..037f774 100644 --- a/tests/testthat/test-dataloading.R +++ b/tests/testthat/test-dataloading.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-datamap.R b/tests/testthat/test-datamap.R index cf4e582..6358aec 100644 --- a/tests/testthat/test-datamap.R +++ b/tests/testthat/test-datamap.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-datetime_restrictions.R b/tests/testthat/test-datetime_restrictions.R index b25ec37..d633536 100644 --- a/tests/testthat/test-datetime_restrictions.R +++ b/tests/testthat/test-datetime_restrictions.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-descriptive_results.R b/tests/testthat/test-descriptive_results.R index ee00137..66a9e0d 100644 --- a/tests/testthat/test-descriptive_results.R +++ b/tests/testthat/test-descriptive_results.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-etl_and_differences_checks.R b/tests/testthat/test-etl_and_differences_checks.R index c0e9f06..703881e 100644 --- a/tests/testthat/test-etl_and_differences_checks.R +++ b/tests/testthat/test-etl_and_differences_checks.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-export.R b/tests/testthat/test-export.R index 6669cac..9e42324 100644 --- a/tests/testthat/test-export.R +++ b/tests/testthat/test-export.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-helper_vars.R b/tests/testthat/test-helper_vars.R index d56b15c..6410584 100644 --- a/tests/testthat/test-helper_vars.R +++ b/tests/testthat/test-helper_vars.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-import.R b/tests/testthat/test-import.R index ad6550f..337502e 100644 --- a/tests/testthat/test-import.R +++ b/tests/testthat/test-import.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-lints.R b/tests/testthat/test-lints.R index b063570..e825fdd 100644 --- a/tests/testthat/test-lints.R +++ b/tests/testthat/test-lints.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-plausibilities.R b/tests/testthat/test-plausibilities.R index 06fcb98..945966e 100644 --- a/tests/testthat/test-plausibilities.R +++ b/tests/testthat/test-plausibilities.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-readme.R b/tests/testthat/test-readme.R index 3d02c94..2595333 100644 --- a/tests/testthat/test-readme.R +++ b/tests/testthat/test-readme.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-reduce_cat.R b/tests/testthat/test-reduce_cat.R index b0f0959..6e9c064 100644 --- a/tests/testthat/test-reduce_cat.R +++ b/tests/testthat/test-reduce_cat.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-render_conformance.R b/tests/testthat/test-render_conformance.R index b16a60c..b89ab77 100644 --- a/tests/testthat/test-render_conformance.R +++ b/tests/testthat/test-render_conformance.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-stats.R b/tests/testthat/test-stats.R index 544b045..db6e688 100644 --- a/tests/testthat/test-stats.R +++ b/tests/testthat/test-stats.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/tests/testthat/test-time_compare.R b/tests/testthat/test-time_compare.R index abaf7cd..9ccf51b 100644 --- a/tests/testthat/test-time_compare.R +++ b/tests/testthat/test-time_compare.R @@ -1,6 +1,6 @@ # DQAstats - Perform data quality assessment (DQA) of electronic health # records (EHR) -# Copyright (C) 2019-2022 Universitätsklinikum Erlangen +# Copyright (C) 2019-2024 Universitätsklinikum Erlangen # # This program is free software: you can redistribute it and/or modify # it under the terms of the GNU General Public License as published by diff --git a/vignettes/DQAstats2SHIPdataset.qmd b/vignettes/DQAstats2SHIPdataset.qmd index 8e85f3a..81295d3 100644 --- a/vignettes/DQAstats2SHIPdataset.qmd +++ b/vignettes/DQAstats2SHIPdataset.qmd @@ -6,7 +6,6 @@ vignette: > %\VignetteEngine{quarto::html} editor_options: chunk_output_type: console - execute: echo: true message: false