diff --git a/js/web/lib/wasm/jsep/webgpu/gpu-data-manager.ts b/js/web/lib/wasm/jsep/webgpu/gpu-data-manager.ts
index 076ec8ca7b5ec..fed7e8412a678 100644
--- a/js/web/lib/wasm/jsep/webgpu/gpu-data-manager.ts
+++ b/js/web/lib/wasm/jsep/webgpu/gpu-data-manager.ts
@@ -195,12 +195,13 @@ class GpuDataManagerImpl implements GpuDataManager {
 
     const commandEncoder = this.backend.getCommandEncoder();
     this.backend.endComputePass();
+    const bufferSize = calcNormalizedBufferSize(cachedData.originalSize);
     const gpuReadBuffer = this.backend.device.createBuffer(
         // eslint-disable-next-line no-bitwise
-        {size: cachedData.originalSize, usage: GPUBufferUsage.COPY_DST | GPUBufferUsage.MAP_READ});
+        {size: bufferSize, usage: GPUBufferUsage.COPY_DST | GPUBufferUsage.MAP_READ});
     commandEncoder.copyBufferToBuffer(
         cachedData.gpuData.buffer /* source buffer */, 0 /* source offset */, gpuReadBuffer /* destination buffer */,
-        0 /* destination offset */, cachedData.originalSize /* size */
+        0 /* destination offset */, bufferSize /* size */
     );
     this.backend.flush();