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Installation of ARP/wARP 7.6 failed #2621

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TomRei87 opened this issue Nov 1, 2017 · 2 comments
Closed

Installation of ARP/wARP 7.6 failed #2621

TomRei87 opened this issue Nov 1, 2017 · 2 comments

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@TomRei87
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TomRei87 commented Nov 1, 2017

Hi,

I tried to setup the whole enviroment to use the CCP4 interface including SHELX, ARP_wARP and SHARP on my current build
Microsoft Windows [Version 10.0.16299.19]

CCP4, SHELX and SHARP I managed to get running, but ARP_wARP doesn't seem to work.

I downloaded the package and proceeded like distributor suggests.

tom@Tom:/usr/local$ tar xfvz /some/where/arp_warp_7.6.tar.gz
tom@Tom:/usr/local$ cd arp_warp_7.6
tom@Tom:/usr/local/arp_warp_7.6$ ./install.sh
Your login shell is: /bin/bash

tcsh located in /bin/tcsh will be used

Replacing /bin/csh with /bin/tcsh

ARP/wARP installer modified on Tue 08 Dec 2015

Checking permissions for /dev/null    - OK
Checking availability of sed command  - OK
Checking availability of tail command - OK
Checking availability of awk command  - OK
Checking decimal separator            - OK
Checking ARP/wARP directory path      - OK
Checking ARP/wARP directory structure - OK
Checking operating system name        - Linux
Checking processor type               - x86_64
ARP/wARP version 7.6 executables for this platform
are available in /usr/local/arp_warp_7.6/bin/bin-x86_64-Linux
*** ERROR ***
This machine cannot run ARP/wARP executables that
are statically linked to glibc.

    *** INSTALLATION OF ARP/wARP 7.6 FAILED ***
Modified version exit status 1
tom@Tom:/usr/local/arp_warp_7.6$

Does anyone has an idea how to get around this issue?

@therealkenc
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therealkenc commented Nov 1, 2017

This is #1466 (CCP4), which is the same as #1462 (Softbank), which is the same as the one just above you in #2622 (Ioncube). What are the odds of that.

The common denominator being these are all statically linked binaries. The notable difference here is that the ARP/wARP installer appears to be kind enough to say it isn't going to work up front, instead of waiting for the segfault. If you somehow managed to work around the shelxd crash in #1446 (here), by whatever means, then it could be a false positive. Comment out the check in the install script and see what breaks next. Bonne chance.

@therealkenc
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No strace provided to confirm, but let's call this #1466 for now. If #1466 flips to fixed and the problem persists, add a comment to that effect over there and someone can take a closer look.

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