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[ci] switch CRAN mirror to RStudio #5230

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May 23, 2022
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8 changes: 4 additions & 4 deletions .ci/test_r_package.sh
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
#!/bin/bash

# set up R environment
CRAN_MIRROR="https://cloud.r-project.org/"
CRAN_MIRROR="https://cran.rstudio.com"
R_LIB_PATH=~/Rlib
mkdir -p $R_LIB_PATH
export R_LIBS=$R_LIB_PATH
Expand All @@ -17,12 +17,12 @@ fi
R_MAJOR_VERSION=( ${R_VERSION//./ } )
if [[ "${R_MAJOR_VERSION}" == "3" ]]; then
export R_MAC_VERSION=3.6.3
export R_MAC_PKG_URL=https://cran.r-project.org/bin/macosx/R-${R_MAC_VERSION}.pkg
export R_MAC_PKG_URL=${CRAN_MIRROR}/bin/macosx/R-${R_MAC_VERSION}.pkg
export R_LINUX_VERSION="3.6.3-1bionic"
export R_APT_REPO="bionic-cran35/"
elif [[ "${R_MAJOR_VERSION}" == "4" ]]; then
export R_MAC_VERSION=4.1.3
export R_MAC_PKG_URL=https://cran.r-project.org/bin/macosx/base/R-${R_MAC_VERSION}.pkg
export R_MAC_PKG_URL=${CRAN_MIRROR}/bin/macosx/base/R-${R_MAC_VERSION}.pkg
export R_LINUX_VERSION="4.1.3-1.2004.0"
export R_APT_REPO="focal-cran40/"
else
Expand All @@ -40,7 +40,7 @@ if [[ $OS_NAME == "linux" ]]; then
--keyserver keyserver.ubuntu.com \
--recv-keys E298A3A825C0D65DFD57CBB651716619E084DAB9
sudo add-apt-repository \
"deb https://cloud.r-project.org/bin/linux/ubuntu ${R_APT_REPO}"
"deb ${CRAN_MIRROR}/bin/linux/ubuntu ${R_APT_REPO}"
sudo apt-get update
sudo apt-get install \
--no-install-recommends \
Expand Down
2 changes: 1 addition & 1 deletion .ci/test_r_package_valgrind.sh
Original file line number Diff line number Diff line change
@@ -1,6 +1,6 @@
#!/bin/bash

RDscriptvalgrind -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown', 'testthat'), repos = 'https://cran.r-project.org', Ncpus = parallel::detectCores())" || exit -1
RDscriptvalgrind -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())" || exit -1
sh build-cran-package.sh \
--r-executable=RDvalgrind \
|| exit -1
Expand Down
4 changes: 2 additions & 2 deletions .ci/test_r_package_windows.ps1
Original file line number Diff line number Diff line change
Expand Up @@ -87,7 +87,7 @@ if ($env:R_MAJOR_VERSION -eq "3") {
$env:R_LIB_PATH = "$env:BUILD_SOURCESDIRECTORY/RLibrary" -replace '[\\]', '/'
$env:R_LIBS = "$env:R_LIB_PATH"
$env:PATH = "$env:RTOOLS_BIN;" + "$env:RTOOLS_MINGW_BIN;" + "$env:R_LIB_PATH/R/bin/x64;" + "$env:R_LIB_PATH/miktex/texmfs/install/miktex/bin/x64;" + $env:PATH
$env:CRAN_MIRROR = "https://cloud.r-project.org/"
$env:CRAN_MIRROR = "https://cran.rstudio.com"
$env:CTAN_MIRROR = "https://ctan.math.illinois.edu/systems/win32/miktex"
$env:CTAN_PACKAGE_ARCHIVE = "$env:CTAN_MIRROR/tm/packages/"
$env:MIKTEX_EXCEPTION_PATH = "$env:TEMP\miktex"
Expand All @@ -109,7 +109,7 @@ tzutil /s "GMT Standard Time"

# download R and RTools
Write-Output "Downloading R and Rtools"
Download-File-With-Retries -url "https://cran.r-project.org/bin/windows/base/old/$env:R_WINDOWS_VERSION/R-$env:R_WINDOWS_VERSION-win.exe" -destfile "R-win.exe"
Download-File-With-Retries -url "$env:CRAN_MIRROR/bin/windows/base/old/$env:R_WINDOWS_VERSION/R-$env:R_WINDOWS_VERSION-win.exe" -destfile "R-win.exe"
Download-File-With-Retries -url "https://github.com/microsoft/LightGBM/releases/download/v2.0.12/$env:RTOOLS_EXE_FILE" -destfile "Rtools.exe"

# Install R
Expand Down
4 changes: 2 additions & 2 deletions .github/workflows/r_package.yml
Original file line number Diff line number Diff line change
Expand Up @@ -191,7 +191,7 @@ jobs:
- name: Install packages
shell: bash
run: |
RDscript${{ matrix.r_customization }} -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown', 'testthat'), repos = 'https://cran.r-project.org', Ncpus = parallel::detectCores())"
RDscript${{ matrix.r_customization }} -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())"
sh build-cran-package.sh --r-executable=RD${{ matrix.r_customization }}
RD${{ matrix.r_customization }} CMD INSTALL lightgbm_*.tar.gz || exit -1
- name: Run tests with sanitizers
Expand Down Expand Up @@ -225,7 +225,7 @@ jobs:
shell: bash
run: |
export PATH=/opt/R-devel/bin/:${PATH}
Rscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown', 'testthat'), repos = 'https://cran.r-project.org', Ncpus = parallel::detectCores())"
Rscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())"
sh build-cran-package.sh
R CMD check --as-cran --run-donttest lightgbm_*.tar.gz || exit -1
if grep -q -E "NOTE|WARNING|ERROR" lightgbm.Rcheck/00check.log; then
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/static_analysis.yml
Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,7 @@ jobs:
- name: Install packages
shell: bash
run: |
Rscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown', 'roxygen2', 'testthat'), repos = 'https://cran.r-project.org', Ncpus = parallel::detectCores())"
Rscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown', 'roxygen2', 'testthat'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())"
sh build-cran-package.sh || exit -1
R CMD INSTALL --with-keep.source lightgbm_*.tar.gz || exit -1
- name: Test documentation
Expand Down
2 changes: 1 addition & 1 deletion .vsts-ci.yml
Original file line number Diff line number Diff line change
Expand Up @@ -317,7 +317,7 @@ jobs:
R_LIB_PATH=~/Rlib
export R_LIBS=${R_LIB_PATH}
mkdir -p ${R_LIB_PATH}
RDscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown'), lib = '${R_LIB_PATH}', dependencies = c('Depends', 'Imports', 'LinkingTo'), repos = 'https://cran.r-project.org', Ncpus = parallel::detectCores())" || exit -1
RDscript -e "install.packages(c('R6', 'data.table', 'jsonlite', 'knitr', 'Matrix', 'RhpcBLASctl', 'rmarkdown'), lib = '${R_LIB_PATH}', dependencies = c('Depends', 'Imports', 'LinkingTo'), repos = 'https://cran.rstudio.com', Ncpus = parallel::detectCores())" || exit -1
sh build-cran-package.sh --r-executable=RD || exit -1
mv lightgbm_${LGB_VER}.tar.gz $(Build.ArtifactStagingDirectory)/lightgbm-${LGB_VER}-r-cran.tar.gz
displayName: 'Build CRAN R-package'
Expand Down