diff --git a/DESCRIPTION b/DESCRIPTION index 6b89ab2..c7e7227 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: iSEEtree -Version: 1.1.0 +Version: 1.2.0 Authors@R: c(person(given = "Giulio", family = "Benedetti", role = c("aut", "cre"), email = "giulio.benedetti@utu.fi", diff --git a/NEWS b/NEWS index 5101746..bfbea38 100644 --- a/NEWS +++ b/NEWS @@ -17,3 +17,7 @@ Changes in version 0.99.3 Changes in version 0.99.8 * Added ColumnTreePlot and LoadingPlot panels + +Changes in version 1.2.0 +* Updated .multiSelectionResponsive +* Conformed to iSEE v2.19.2 diff --git a/R/class-AbundanceDensityPlot.R b/R/class-AbundanceDensityPlot.R index b22065d..d874d6b 100644 --- a/R/class-AbundanceDensityPlot.R +++ b/R/class-AbundanceDensityPlot.R @@ -269,12 +269,13 @@ setMethod(".hideInterface", "AbundanceDensityPlot", function(x, field) { }) setMethod(".multiSelectionResponsive", "AbundanceDensityPlot", - function(x, dims = character(0)) { + function(x, dim = character(0)) { - if ("row" %in% dims) { + if ("row" %in% dim) { return(TRUE) } - return(FALSE) + + return(FALSE) }) #' @importFrom methods callNextMethod diff --git a/R/class-AbundancePlot.R b/R/class-AbundancePlot.R index 53a6b2e..2ced36a 100644 --- a/R/class-AbundancePlot.R +++ b/R/class-AbundancePlot.R @@ -237,9 +237,9 @@ setMethod(".hideInterface", "AbundancePlot", function(x, field) { }) setMethod(".multiSelectionResponsive", "AbundancePlot", - function(x, dims = character(0)) { + function(x, dim = character(0)) { - if( "column" %in% dims ){ + if( "column" %in% dim ){ return(TRUE) } return(FALSE) diff --git a/R/class-ColumnTreePlot.R b/R/class-ColumnTreePlot.R index a6b8195..8a3b279 100644 --- a/R/class-ColumnTreePlot.R +++ b/R/class-ColumnTreePlot.R @@ -265,9 +265,9 @@ setMethod(".hideInterface", "ColumnTreePlot", function(x, field) { }) setMethod(".multiSelectionResponsive", "ColumnTreePlot", - function(x, dims = character(0)) { + function(x, dim = character(0)) { - if( "column" %in% dims ){ + if( "column" %in% dim ){ return(TRUE) } diff --git a/R/class-LoadingPlot.R b/R/class-LoadingPlot.R index 69e9bb5..97e724a 100644 --- a/R/class-LoadingPlot.R +++ b/R/class-LoadingPlot.R @@ -239,12 +239,13 @@ setMethod(".hideInterface", "LoadingPlot", function(x, field) { }) setMethod(".multiSelectionResponsive", "LoadingPlot", - function(x, dims = character(0)) { + function(x, dim = character(0)) { - if ("row" %in% dims) { + if ("row" %in% dim) { return(TRUE) } - return(FALSE) + + return(FALSE) }) #' @importFrom methods callNextMethod diff --git a/R/class-RDAPlot.R b/R/class-RDAPlot.R index 1e3aecc..0567494 100644 --- a/R/class-RDAPlot.R +++ b/R/class-RDAPlot.R @@ -296,9 +296,9 @@ setMethod(".hideInterface", "RDAPlot", function(x, field) { } }) -setMethod(".multiSelectionResponsive", "RDAPlot", function(x, dims = character(0)) { +setMethod(".multiSelectionResponsive", "RDAPlot", function(x, dim = character(0)) { - if( "column" %in% dims ){ + if( "column" %in% dim ){ return(TRUE) } return(FALSE) diff --git a/R/class-RowTreePlot.R b/R/class-RowTreePlot.R index d566c6d..19bb4cd 100644 --- a/R/class-RowTreePlot.R +++ b/R/class-RowTreePlot.R @@ -265,9 +265,9 @@ setMethod(".hideInterface", "RowTreePlot", function(x, field) { }) setMethod(".multiSelectionResponsive", "RowTreePlot", - function(x, dims = character(0)) { + function(x, dim = character(0)) { - if( "row" %in% dims ){ + if( "row" %in% dim ){ return(TRUE) } diff --git a/vignettes/iSEEtree.Rmd b/vignettes/iSEEtree.Rmd index 3d00292..5c7cf7d 100644 --- a/vignettes/iSEEtree.Rmd +++ b/vignettes/iSEEtree.Rmd @@ -167,7 +167,8 @@ SCREENSHOT("screenshots/get_started.png", delay=20) ## Citation -We hope that iSEEtree will be useful for your research. Please use the following information to cite the package and the overall approach. Thank you! +We hope that iSEEtree will be useful for your research. Please use the following +information to cite the package and the overall approach. Thank you! ```{r citation} ## Citation info @@ -176,7 +177,8 @@ citation("iSEEtree") ## Background Knowledge -iSEEtree is based on many other packages and in particular on those that have implemented the infrastructure needed for dealing with omics data, microbiome +iSEEtree is based on many other packages and in particular on those that have +implemented the infrastructure needed for dealing with omics data, microbiome data and interactive visualisation. That is, packages like [_SummarizedExperiment_](https://bioconductor.org/packages/3.18/bioc/html/SummarizedExperiment.html), [_TreeSummarizedExperiment_](https://bioconductor.org/packages/3.18/bioc/html/TreeSummarizedExperiment.html), diff --git a/vignettes/screenshots/get_started.png b/vignettes/screenshots/get_started.png index 16ed7d5..57f9cef 100644 Binary files a/vignettes/screenshots/get_started.png and b/vignettes/screenshots/get_started.png differ