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TSV output files #15

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fgvieira opened this issue Dec 6, 2023 · 3 comments
Open

TSV output files #15

fgvieira opened this issue Dec 6, 2023 · 3 comments

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@fgvieira
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fgvieira commented Dec 6, 2023 •
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  • add header on getdamage files .res.gz and .rlens.gz
  • add header on lca file .rlens.gz
  • TaxID on .dfit.txt.gz should always have its unique column so it can be matched with other files (not taxid:taxname)
  • Any reason why lca stats is named .stat and aggregate stats is named .aggregate.stat.txt.gz? It would be nice if the names were consistent, e.g. .lca.stat.gz and .aggregate.stat.gz, or .lca.stat.tsv.gz and .aggregate.stat.tsv.gz.
@fgvieira fgvieira changed the title LCA aggregate output format TSV output format Dec 8, 2023
@fgvieira
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fgvieira commented Dec 11, 2023 •
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Fixed third point on 60a9999

@fgvieira fgvieira changed the title TSV output format TSV output files Dec 12, 2023
@fgvieira
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Fixed fourth point on 80e2d64

@ANGSD
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ANGSD commented Dec 18, 2023

rlens added in this commit. 39be5db
If there has been changed in format of output, it is important that this is reflected in the docs/formats.text/pdf, readme and code helppages.

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@fgvieira @ANGSD